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Update check mounted files #26

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pbelmann opened this issue Oct 26, 2015 · 2 comments
Open

Update check mounted files #26

pbelmann opened this issue Oct 26, 2015 · 2 comments
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@pbelmann
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In PR bioboxes/rfc#155 two new binning evaluation interfaces are introduced. Schemas of both interfaces cannot be evaluated by using the current file validator:

Traceback (most recent call last):
  File "<string>", line 7, in <module>
  File "pyinstaller/build/validate-biobox-file/out00-PYZ.pyz/validate_biobox_file.main", line 76, in run
  File "pyinstaller/build/validate-biobox-file/out00-PYZ.pyz/pymonad.Monad", line 34, in __rshift__
  File "pyinstaller/build/validate-biobox-file/out00-PYZ.pyz/pymonad.Either", line 109, in bind
  File "pyinstaller/build/validate-biobox-file/out00-PYZ.pyz/validate_biobox_file.main", line 66, in check_mounted_files
  File "pyinstaller/build/validate-biobox-file/out00-PYZ.pyz/validate_biobox_file.main", line 51, in is_file_arg
  File "pyinstaller/build/validate-biobox-file/out00-PYZ.pyz/validate_biobox_file.main", line 51, in <lambda>
@pbelmann pbelmann added the bug label Oct 26, 2015
@pbelmann pbelmann self-assigned this Oct 26, 2015
@michaelbarton
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I looked at the PR. Is this because binning evaluation YAML is a dictionary?

@pbelmann
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pbelmann commented Nov 2, 2015

Yes. I know it is not a nice solution, but we are using lists in (e.g. Assemblers) and dictionaries (e.g. Binning evaluation, read based assembler evaluation).

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