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add description to biom table types #115

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RNAer opened this issue Feb 15, 2013 · 6 comments
Open

add description to biom table types #115

RNAer opened this issue Feb 15, 2013 · 6 comments

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@RNAer
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RNAer commented Feb 15, 2013

The types are:
metabolite table, gene table, otu table, pathway table, function table, ortholog table, taxon table

@wasade
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wasade commented May 14, 2014

@RNAer, would you be interested in issuing a PR on this for biom 2.0?

@RNAer
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RNAer commented May 15, 2014

sure.

On Wed, May 14, 2014 at 5:14 PM, Daniel McDonald
[email protected]:

@RNAer https://github.com/RNAer, would you be interested in issuing a
PR on this for biom 2.0?


Reply to this email directly or view it on GitHubhttps://github.com//issues/115#issuecomment-43149715
.

@wasade
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wasade commented Sep 17, 2018

The demand to use the table types seems low... closing for now

@wasade wasade closed this as completed Sep 17, 2018
@peterjc
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peterjc commented Mar 10, 2023

Can we reopen this?

Cross reference #903 about inconsistent checking that a table type is provided, and #756 asking for examples of the different types.

@wasade
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wasade commented Mar 10, 2023

Sure, although these labels are still generic without a clear way (to me at least) on how to constrain the feature label space so I don't foresee an impact on validation

@wasade wasade reopened this Mar 10, 2023
@peterjc
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peterjc commented Mar 10, 2023

Sure, but examples/descriptions would never the less be useful.

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3 participants