From ba740808e0b9c5e575c596c171b4c3db71b55a24 Mon Sep 17 00:00:00 2001 From: FynnBe Date: Wed, 13 Nov 2024 22:34:41 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20bioimage?= =?UTF-8?q?-io/collection@a16de50fab13959611b7c4d3494d63d353d3bc81=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../_settings.html | 2 +- .../collection_json.html | 484 ++- .../db_structure/chat.html | 2 +- .../mailroom/send_email.html | 178 +- .../remote_collection.html | 3605 ++++++++--------- search.js | 2 +- 6 files changed, 2160 insertions(+), 2113 deletions(-) diff --git a/bioimageio_collection_backoffice/_settings.html b/bioimageio_collection_backoffice/_settings.html index 4e922ca2..60777f1d 100644 --- a/bioimageio_collection_backoffice/_settings.html +++ b/bioimageio_collection_backoffice/_settings.html @@ -546,7 +546,7 @@

settings = - Settings(github_output='/home/runner/work/_temp/_runner_file_commands/set_output_2ace5470-eab0-42bd-8999-c39ff3901936', collection_config='https://raw.githubusercontent.com/bioimage-io/collection/main/bioimageio_collection_config.json', run_url=None, s3_host='uk1s3.embassy.ebi.ac.uk', s3_bucket='public-datasets', s3_folder='testing.bioimage.io/runner/instance', s3_pytest_folder='testing.bioimage.io/runner/pytest', s3_sandbox_folder='sandbox.bioimage.io', s3_test_folder='testing.bioimage.io/runner/sandbox', test_package_id='frank-water-buffalo', test_package_url='https://uk1s3.embassy.ebi.ac.uk/public-datasets/examples.bioimage.io/frank-water-buffalo_v1.zip', zenodo_test_url='https://sandbox.zenodo.org', zenodo_url='https://sandbox.zenodo.org', bioimageio_user_id=None, mail_password=SecretStr(''), s3_access_key_id=SecretStr(''), s3_secret_access_key=SecretStr(''), zenodo_api_access_token=SecretStr(''), zenodo_test_api_access_token=SecretStr(''), github_pat=SecretStr('')) + Settings(github_output='/home/runner/work/_temp/_runner_file_commands/set_output_9ea48ce0-272f-4e73-a037-6d92ebd17629', collection_config='https://raw.githubusercontent.com/bioimage-io/collection/main/bioimageio_collection_config.json', run_url=None, s3_host='uk1s3.embassy.ebi.ac.uk', s3_bucket='public-datasets', s3_folder='testing.bioimage.io/runner/instance', s3_pytest_folder='testing.bioimage.io/runner/pytest', s3_sandbox_folder='sandbox.bioimage.io', s3_test_folder='testing.bioimage.io/runner/sandbox', test_package_id='frank-water-buffalo', test_package_url='https://uk1s3.embassy.ebi.ac.uk/public-datasets/examples.bioimage.io/frank-water-buffalo_v1.zip', zenodo_test_url='https://sandbox.zenodo.org', zenodo_url='https://sandbox.zenodo.org', bioimageio_user_id=None, mail_password=SecretStr(''), s3_access_key_id=SecretStr(''), s3_secret_access_key=SecretStr(''), zenodo_api_access_token=SecretStr(''), zenodo_test_api_access_token=SecretStr(''), github_pat=SecretStr(''))
diff --git a/bioimageio_collection_backoffice/collection_json.html b/bioimageio_collection_backoffice/collection_json.html index c790119c..ba1297ff 100644 --- a/bioimageio_collection_backoffice/collection_json.html +++ b/bioimageio_collection_backoffice/collection_json.html @@ -116,6 +116,27 @@

API Documentation

+ +
  • + Uploader + +
  • CollectionEntry @@ -123,6 +144,9 @@

    API Documentation

  • authors
  • +
  • + uploader +
  • badges
  • @@ -183,6 +207,9 @@

    API Documentation

  • source
  • +
  • + status +
  • model_config
  • @@ -356,101 +383,110 @@

    11 CollectionWebsiteConfigTemplate, 12) 13from .common import Node - 14 + 14from .db_structure.version_info import DraftStatus, ErrorStatus 15 - 16class Author(Node, frozen=True): - 17 name: str - 18 affiliation: Optional[str] = None - 19 email: Optional[str] = None - 20 orcid: Optional[str] = None - 21 + 16 + 17class Author(Node, frozen=True): + 18 name: str + 19 affiliation: Optional[str] = None + 20 email: Optional[str] = None + 21 orcid: Optional[str] = None 22 - 23class Badge(Node, frozen=True): - 24 icon: HttpUrl - 25 label: str - 26 url: HttpUrl - 27 + 23 + 24class Badge(Node, frozen=True): + 25 icon: HttpUrl + 26 label: str + 27 url: HttpUrl 28 - 29class TrainingData(Node, frozen=True): - 30 id: str - 31 + 29 + 30class TrainingData(Node, frozen=True): + 31 id: str 32 - 33class CollectionEntry(Node, frozen=True): - 34 authors: Sequence[Author] - 35 badges: Sequence[Badge] - 36 concept_doi: Optional[str] - 37 covers: Sequence[HttpUrl] - 38 created: datetime - 39 description: str - 40 download_count: Union[Literal["?"], int] - 41 download_url: Optional[HttpUrl] = None - 42 icon: Optional[HttpUrl] = None - 43 id: str - 44 license: Optional[str] - 45 links: Sequence[str] - 46 name: str - 47 nickname_icon: Optional[str] = None - 48 nickname: Optional[str] = None - 49 rdf_source: HttpUrl - 50 root_url: str - 51 tags: Sequence[str] = () - 52 training_data: Optional[TrainingData] = None - 53 type: Literal["application", "model", "notebook", "dataset"] - 54 source: Optional[str] = None - 55 - 56 def __lt__(self, other: CollectionEntry): - 57 sdc = 0 if self.download_count == "?" else self.download_count - 58 odc = 0 if other.download_count == "?" else other.download_count - 59 if sdc == odc: - 60 return self.created > other.created # newer entry first - 61 else: - 62 return sdc > odc # higher download count first - 63 + 33 + 34class Uploader(Node, frozen=True): + 35 name: Optional[str] = None + 36 email: str + 37 + 38 + 39class CollectionEntry(Node, frozen=True): + 40 authors: Sequence[Author] + 41 uploader: Uploader + 42 badges: Sequence[Badge] + 43 concept_doi: Optional[str] + 44 covers: Sequence[HttpUrl] + 45 created: datetime + 46 description: str + 47 download_count: Union[Literal["?"], int] + 48 download_url: Optional[HttpUrl] = None + 49 icon: Optional[HttpUrl] = None + 50 id: str + 51 license: Optional[str] + 52 links: Sequence[str] + 53 name: str + 54 nickname_icon: Optional[str] = None + 55 nickname: Optional[str] = None + 56 rdf_source: HttpUrl + 57 root_url: str + 58 tags: Sequence[str] = () + 59 training_data: Optional[TrainingData] = None + 60 type: Literal["application", "model", "notebook", "dataset"] + 61 source: Optional[str] = None + 62 status: Optional[Union[DraftStatus, ErrorStatus]] = None + 63 """status of the draft (for collection_draft.json only)""" 64 - 65class CollectionWebsiteConfig(CollectionWebsiteConfigTemplate, frozen=True): - 66 n_resource_versions: Mapping[str, int] - 67 resource_types: Sequence[str] - 68 n_resources: Mapping[str, int] - 69 url_root: HttpUrl - 70 - 71 @model_validator(mode="after") - 72 def _validate_default_type(self): - 73 if self.default_type not in self.resource_types: - 74 logger.warning( - 75 "Missing `default_type={self.default_type}` in `resource_types={self.resource_types}`" - 76 ) - 77 return self - 78 + 65 def __lt__(self, other: CollectionEntry): + 66 sdc = 0 if self.download_count == "?" else self.download_count + 67 odc = 0 if other.download_count == "?" else other.download_count + 68 if sdc == odc: + 69 return self.created > other.created # newer entry first + 70 else: + 71 return sdc > odc # higher download count first + 72 + 73 + 74class CollectionWebsiteConfig(CollectionWebsiteConfigTemplate, frozen=True): + 75 n_resource_versions: Mapping[str, int] + 76 resource_types: Sequence[str] + 77 n_resources: Mapping[str, int] + 78 url_root: HttpUrl 79 - 80class CollectionJson(CollectionJsonTemplate, frozen=True): - 81 collection: Sequence[CollectionEntry] - 82 config: CollectionWebsiteConfig - 83 created: datetime = Field(default_factory=datetime.now) - 84 - 85 - 86class ConceptVersion(Node, frozen=True): - 87 v: str - 88 created: datetime - 89 doi: Optional[str] - 90 source: str - 91 sha256: str - 92 - 93 def __lt__(self, other: ConceptVersion): - 94 return self.created > other.created - 95 - 96 - 97class ConceptSummary(Node, frozen=True): - 98 concept: str - 99 type: str -100 concept_doi: Optional[str] -101 versions: Sequence[ConceptVersion] -102 -103 def __lt__(self, other: ConceptSummary): -104 return self.versions[0].created > other.versions[0].created + 80 @model_validator(mode="after") + 81 def _validate_default_type(self): + 82 if self.default_type not in self.resource_types: + 83 logger.warning( + 84 "Missing `default_type={self.default_type}` in `resource_types={self.resource_types}`" + 85 ) + 86 return self + 87 + 88 + 89class CollectionJson(CollectionJsonTemplate, frozen=True): + 90 collection: Sequence[CollectionEntry] + 91 config: CollectionWebsiteConfig + 92 created: datetime = Field(default_factory=datetime.now) + 93 + 94 + 95class ConceptVersion(Node, frozen=True): + 96 v: str + 97 created: datetime + 98 doi: Optional[str] + 99 source: str +100 sha256: str +101 +102 def __lt__(self, other: ConceptVersion): +103 return self.created > other.created +104 105 -106 -107class AllVersions(Node, frozen=True): -108 entries: Sequence[ConceptSummary] +106class ConceptSummary(Node, frozen=True): +107 concept: str +108 type: str +109 concept_doi: Optional[str] +110 versions: Sequence[ConceptVersion] +111 +112 def __lt__(self, other: ConceptSummary): +113 return self.versions[0].created > other.versions[0].created +114 +115 +116class AllVersions(Node, frozen=True): +117 entries: Sequence[ConceptSummary] @@ -466,11 +502,11 @@

    -
    17class Author(Node, frozen=True):
    -18    name: str
    -19    affiliation: Optional[str] = None
    -20    email: Optional[str] = None
    -21    orcid: Optional[str] = None
    +            
    18class Author(Node, frozen=True):
    +19    name: str
    +20    affiliation: Optional[str] = None
    +21    email: Optional[str] = None
    +22    orcid: Optional[str] = None
     
    @@ -579,10 +615,10 @@

    -
    24class Badge(Node, frozen=True):
    -25    icon: HttpUrl
    -26    label: str
    -27    url: HttpUrl
    +            
    25class Badge(Node, frozen=True):
    +26    icon: HttpUrl
    +27    label: str
    +28    url: HttpUrl
     
    @@ -680,8 +716,8 @@

    -
    30class TrainingData(Node, frozen=True):
    -31    id: str
    +            
    31class TrainingData(Node, frozen=True):
    +32    id: str
     
    @@ -743,6 +779,95 @@

    + + +
    + +
    + + class + Uploader(bioimageio_collection_backoffice.common.Node): + + + +
    + +
    35class Uploader(Node, frozen=True):
    +36    name: Optional[str] = None
    +37    email: str
    +
    + + + + +
    +
    + name: Optional[str] + + +
    + + + + +
    +
    +
    + email: str + + +
    + + + + +
    +
    +
    + model_config: ClassVar[pydantic.config.ConfigDict] = + + {'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False} + + +
    + + +

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    +
    + + +
    +
    +
    + model_fields: ClassVar[Dict[str, pydantic.fields.FieldInfo]] = + + {'name': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'email': FieldInfo(annotation=str, required=True)} + + +
    + + +

    Metadata about the fields defined on the model, +mapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    + +

    This replaces Model.__fields__ from Pydantic V1.

    +
    + + +
    +
    +
    + model_computed_fields: ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]] = +{} + + +
    + + +

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    +
    + +
    @@ -756,36 +881,39 @@

    -
    34class CollectionEntry(Node, frozen=True):
    -35    authors: Sequence[Author]
    -36    badges: Sequence[Badge]
    -37    concept_doi: Optional[str]
    -38    covers: Sequence[HttpUrl]
    -39    created: datetime
    -40    description: str
    -41    download_count: Union[Literal["?"], int]
    -42    download_url: Optional[HttpUrl] = None
    -43    icon: Optional[HttpUrl] = None
    -44    id: str
    -45    license: Optional[str]
    -46    links: Sequence[str]
    -47    name: str
    -48    nickname_icon: Optional[str] = None
    -49    nickname: Optional[str] = None
    -50    rdf_source: HttpUrl
    -51    root_url: str
    -52    tags: Sequence[str] = ()
    -53    training_data: Optional[TrainingData] = None
    -54    type: Literal["application", "model", "notebook", "dataset"]
    -55    source: Optional[str] = None
    -56
    -57    def __lt__(self, other: CollectionEntry):
    -58        sdc = 0 if self.download_count == "?" else self.download_count
    -59        odc = 0 if other.download_count == "?" else other.download_count
    -60        if sdc == odc:
    -61            return self.created > other.created  # newer entry first
    -62        else:
    -63            return sdc > odc  # higher download count first
    +            
    40class CollectionEntry(Node, frozen=True):
    +41    authors: Sequence[Author]
    +42    uploader: Uploader
    +43    badges: Sequence[Badge]
    +44    concept_doi: Optional[str]
    +45    covers: Sequence[HttpUrl]
    +46    created: datetime
    +47    description: str
    +48    download_count: Union[Literal["?"], int]
    +49    download_url: Optional[HttpUrl] = None
    +50    icon: Optional[HttpUrl] = None
    +51    id: str
    +52    license: Optional[str]
    +53    links: Sequence[str]
    +54    name: str
    +55    nickname_icon: Optional[str] = None
    +56    nickname: Optional[str] = None
    +57    rdf_source: HttpUrl
    +58    root_url: str
    +59    tags: Sequence[str] = ()
    +60    training_data: Optional[TrainingData] = None
    +61    type: Literal["application", "model", "notebook", "dataset"]
    +62    source: Optional[str] = None
    +63    status: Optional[Union[DraftStatus, ErrorStatus]] = None
    +64    """status of the draft (for collection_draft.json only)"""
    +65
    +66    def __lt__(self, other: CollectionEntry):
    +67        sdc = 0 if self.download_count == "?" else self.download_count
    +68        odc = 0 if other.download_count == "?" else other.download_count
    +69        if sdc == odc:
    +70            return self.created > other.created  # newer entry first
    +71        else:
    +72            return sdc > odc  # higher download count first
     
    @@ -801,6 +929,17 @@

    +

    +
    +
    + uploader: Uploader + + +
    + + + +
    @@ -1021,6 +1160,19 @@

    +

    +
    @@ -1041,7 +1193,7 @@

    model_fields: ClassVar[Dict[str, pydantic.fields.FieldInfo]] = - {'authors': FieldInfo(annotation=Sequence[Author], required=True), 'badges': FieldInfo(annotation=Sequence[Badge], required=True), 'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=True), 'covers': FieldInfo(annotation=Sequence[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]], required=True), 'created': FieldInfo(annotation=datetime, required=True), 'description': FieldInfo(annotation=str, required=True), 'download_count': FieldInfo(annotation=Union[Literal['?'], int], required=True), 'download_url': FieldInfo(annotation=Union[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)], NoneType], required=False, default=None), 'icon': FieldInfo(annotation=Union[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)], NoneType], required=False, default=None), 'id': FieldInfo(annotation=str, required=True), 'license': FieldInfo(annotation=Union[str, NoneType], required=True), 'links': FieldInfo(annotation=Sequence[str], required=True), 'name': FieldInfo(annotation=str, required=True), 'nickname_icon': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'nickname': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'rdf_source': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'root_url': FieldInfo(annotation=str, required=True), 'tags': FieldInfo(annotation=Sequence[str], required=False, default=()), 'training_data': FieldInfo(annotation=Union[TrainingData, NoneType], required=False, default=None), 'type': FieldInfo(annotation=Literal['application', 'model', 'notebook', 'dataset'], required=True), 'source': FieldInfo(annotation=Union[str, NoneType], required=False, default=None)} + {'authors': FieldInfo(annotation=Sequence[Author], required=True), 'uploader': FieldInfo(annotation=Uploader, required=True), 'badges': FieldInfo(annotation=Sequence[Badge], required=True), 'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=True), 'covers': FieldInfo(annotation=Sequence[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]], required=True), 'created': FieldInfo(annotation=datetime, required=True), 'description': FieldInfo(annotation=str, required=True), 'download_count': FieldInfo(annotation=Union[Literal['?'], int], required=True), 'download_url': FieldInfo(annotation=Union[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)], NoneType], required=False, default=None), 'icon': FieldInfo(annotation=Union[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)], NoneType], required=False, default=None), 'id': FieldInfo(annotation=str, required=True), 'license': FieldInfo(annotation=Union[str, NoneType], required=True), 'links': FieldInfo(annotation=Sequence[str], required=True), 'name': FieldInfo(annotation=str, required=True), 'nickname_icon': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'nickname': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'rdf_source': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'root_url': FieldInfo(annotation=str, required=True), 'tags': FieldInfo(annotation=Sequence[str], required=False, default=()), 'training_data': FieldInfo(annotation=Union[TrainingData, NoneType], required=False, default=None), 'type': FieldInfo(annotation=Literal['application', 'model', 'notebook', 'dataset'], required=True), 'source': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'status': FieldInfo(annotation=Union[Annotated[Union[UnpackingStatus, UnpackedStatus, TestingStatus, AwaitingReviewStatus, ChangesRequestedStatus, AcceptedStatus, PublishedDraftStatus], Discriminator], ErrorStatus, NoneType], required=False, default=None)}
    @@ -1081,19 +1233,19 @@

    -
    66class CollectionWebsiteConfig(CollectionWebsiteConfigTemplate, frozen=True):
    -67    n_resource_versions: Mapping[str, int]
    -68    resource_types: Sequence[str]
    -69    n_resources: Mapping[str, int]
    -70    url_root: HttpUrl
    -71
    -72    @model_validator(mode="after")
    -73    def _validate_default_type(self):
    -74        if self.default_type not in self.resource_types:
    -75            logger.warning(
    -76                "Missing `default_type={self.default_type}` in `resource_types={self.resource_types}`"
    -77            )
    -78        return self
    +            
    75class CollectionWebsiteConfig(CollectionWebsiteConfigTemplate, frozen=True):
    +76    n_resource_versions: Mapping[str, int]
    +77    resource_types: Sequence[str]
    +78    n_resources: Mapping[str, int]
    +79    url_root: HttpUrl
    +80
    +81    @model_validator(mode="after")
    +82    def _validate_default_type(self):
    +83        if self.default_type not in self.resource_types:
    +84            logger.warning(
    +85                "Missing `default_type={self.default_type}` in `resource_types={self.resource_types}`"
    +86            )
    +87        return self
     
    @@ -1217,10 +1369,10 @@
    Inherited Members
    -
    81class CollectionJson(CollectionJsonTemplate, frozen=True):
    -82    collection: Sequence[CollectionEntry]
    -83    config: CollectionWebsiteConfig
    -84    created: datetime = Field(default_factory=datetime.now)
    +            
    90class CollectionJson(CollectionJsonTemplate, frozen=True):
    +91    collection: Sequence[CollectionEntry]
    +92    config: CollectionWebsiteConfig
    +93    created: datetime = Field(default_factory=datetime.now)
     
    @@ -1340,15 +1492,15 @@
    Inherited Members
    -
    87class ConceptVersion(Node, frozen=True):
    -88    v: str
    -89    created: datetime
    -90    doi: Optional[str]
    -91    source: str
    -92    sha256: str
    -93
    -94    def __lt__(self, other: ConceptVersion):
    -95        return self.created > other.created
    +            
     96class ConceptVersion(Node, frozen=True):
    + 97    v: str
    + 98    created: datetime
    + 99    doi: Optional[str]
    +100    source: str
    +101    sha256: str
    +102
    +103    def __lt__(self, other: ConceptVersion):
    +104        return self.created > other.created
     
    @@ -1468,14 +1620,14 @@
    Inherited Members
    -
     98class ConceptSummary(Node, frozen=True):
    - 99    concept: str
    -100    type: str
    -101    concept_doi: Optional[str]
    -102    versions: Sequence[ConceptVersion]
    -103
    -104    def __lt__(self, other: ConceptSummary):
    -105        return self.versions[0].created > other.versions[0].created
    +            
    107class ConceptSummary(Node, frozen=True):
    +108    concept: str
    +109    type: str
    +110    concept_doi: Optional[str]
    +111    versions: Sequence[ConceptVersion]
    +112
    +113    def __lt__(self, other: ConceptSummary):
    +114        return self.versions[0].created > other.versions[0].created
     
    @@ -1584,8 +1736,8 @@
    Inherited Members
    -
    108class AllVersions(Node, frozen=True):
    -109    entries: Sequence[ConceptSummary]
    +            
    117class AllVersions(Node, frozen=True):
    +118    entries: Sequence[ConceptSummary]
     
    diff --git a/bioimageio_collection_backoffice/db_structure/chat.html b/bioimageio_collection_backoffice/db_structure/chat.html index eacd58b8..293eef22 100644 --- a/bioimageio_collection_backoffice/db_structure/chat.html +++ b/bioimageio_collection_backoffice/db_structure/chat.html @@ -225,7 +225,7 @@

    model_fields: ClassVar[Dict[str, pydantic.fields.FieldInfo]] = - {'author': FieldInfo(annotation=str, required=True), 'text': FieldInfo(annotation=str, required=True), 'timestamp': FieldInfo(annotation=datetime, required=False, default=datetime.datetime(2024, 11, 13, 21, 10, 46, 607519))} + {'author': FieldInfo(annotation=str, required=True), 'text': FieldInfo(annotation=str, required=True), 'timestamp': FieldInfo(annotation=datetime, required=False, default=datetime.datetime(2024, 11, 13, 22, 34, 38, 185006))}
    diff --git a/bioimageio_collection_backoffice/mailroom/send_email.html b/bioimageio_collection_backoffice/mailroom/send_email.html index 349965b6..14c70682 100644 --- a/bioimageio_collection_backoffice/mailroom/send_email.html +++ b/bioimageio_collection_backoffice/mailroom/send_email.html @@ -95,63 +95,61 @@

    17 18 19def notify_uploader(rv: Union[RecordDraft, Record], subject_end: str, msg: str): -20 email, name = rv.get_uploader() -21 if email is None: -22 raise ValueError("missing uploader email") -23 -24 subject = f"{STATUS_UPDATE_SUBJECT}{rv.id} {rv.version} {subject_end.strip()}" -25 if email == BOT_EMAIL: -26 logger.info("skipping email '{}' to {}", subject, BOT_EMAIL) -27 return -28 -29 send_email( -30 subject=subject, -31 body=( -32 f"Dear {name},\n" -33 + f"{msg.strip()}\n" -34 + "Kind regards,\n" -35 + "The bioimage.io bot 🦒\n" -36 + REPLY_HINT -37 ).replace( -38 "\n", "\n\n" # respect newlines in markdown -39 ), -40 recipients=[email], -41 ) -42 -43 -44def send_email(subject: str, body: str, recipients: List[str]): -45 from_addr = BOT_EMAIL -46 to_addr = ", ".join(recipients) -47 body_html = markdown.markdown(body) -48 msg = MIMEText(body_html, "html") -49 msg["From"] = from_addr -50 msg["To"] = to_addr -51 msg["Subject"] = subject -52 with smtplib.SMTP_SSL(SMTP_SERVER, SMTP_PORT) as smtp_server: -53 _ = smtp_server.login(BOT_EMAIL, settings.mail_password.get_secret_value()) -54 _ = smtp_server.sendmail(BOT_EMAIL, recipients, msg.as_string()) +20 uploader = rv.get_uploader() +21 +22 subject = f"{STATUS_UPDATE_SUBJECT}{rv.id} {rv.version} {subject_end.strip()}" +23 if uploader.email == BOT_EMAIL: +24 logger.info("skipping email '{}' to {}", subject, BOT_EMAIL) +25 return +26 +27 send_email( +28 subject=subject, +29 body=( +30 f"Dear {uploader.name},\n" +31 + f"{msg.strip()}\n" +32 + "Kind regards,\n" +33 + "The bioimage.io bot 🦒\n" +34 + REPLY_HINT +35 ).replace( +36 "\n", "\n\n" # respect newlines in markdown +37 ), +38 recipients=[uploader.email], +39 ) +40 +41 +42def send_email(subject: str, body: str, recipients: List[str]): +43 from_addr = BOT_EMAIL +44 to_addr = ", ".join(recipients) +45 body_html = markdown.markdown(body) +46 msg = MIMEText(body_html, "html") +47 msg["From"] = from_addr +48 msg["To"] = to_addr +49 msg["Subject"] = subject +50 with smtplib.SMTP_SSL(SMTP_SERVER, SMTP_PORT) as smtp_server: +51 _ = smtp_server.login(BOT_EMAIL, settings.mail_password.get_secret_value()) +52 _ = smtp_server.sendmail(BOT_EMAIL, recipients, msg.as_string()) +53 +54 logger.info("Email '{}' sent to {}", subject, recipients) 55 -56 logger.info("Email '{}' sent to {}", subject, recipients) -57 -58 -59if __name__ == "__main__": -60 # send_email( -61 # subject=STATUS_UPDATE_SUBJECT + " lazy-bug draft", -62 # body="Staged draft version of your model 'lazy-bug' is now under review.", -63 # recipients=["bioimageiobot@gmail.com"], -64 # ) -65 -66 send_email( -67 subject="something is awaiting review ⌛", -68 body=( -69 "Dear,\n" -70 + "Thank you for proposing [this](https://bioimage.io/#/?repo=https%3A%2F%2Fuk1s3.embassy.ebi.ac.uk%2Fpublic-datasets%2Fbioimage.io%2Fcollection_staged.json&id=faithful-chicken)!\n" -71 + "Our maintainers will take a look shortly!" -72 + "Kind regards,\n" -73 + "The bioimage.io bot 🦒\n" -74 ), -75 recipients=["bioimageiobot@gmail.com"], -76 ) +56 +57if __name__ == "__main__": +58 # send_email( +59 # subject=STATUS_UPDATE_SUBJECT + " lazy-bug draft", +60 # body="Staged draft version of your model 'lazy-bug' is now under review.", +61 # recipients=["bioimageiobot@gmail.com"], +62 # ) +63 +64 send_email( +65 subject="something is awaiting review ⌛", +66 body=( +67 "Dear,\n" +68 + "Thank you for proposing [this](https://bioimage.io/#/?repo=https%3A%2F%2Fuk1s3.embassy.ebi.ac.uk%2Fpublic-datasets%2Fbioimage.io%2Fcollection_staged.json&id=faithful-chicken)!\n" +69 + "Our maintainers will take a look shortly!" +70 + "Kind regards,\n" +71 + "The bioimage.io bot 🦒\n" +72 ), +73 recipients=["bioimageiobot@gmail.com"], +74 )

    @@ -168,28 +166,26 @@

    20def notify_uploader(rv: Union[RecordDraft, Record], subject_end: str, msg: str):
    -21    email, name = rv.get_uploader()
    -22    if email is None:
    -23        raise ValueError("missing uploader email")
    -24
    -25    subject = f"{STATUS_UPDATE_SUBJECT}{rv.id} {rv.version} {subject_end.strip()}"
    -26    if email == BOT_EMAIL:
    -27        logger.info("skipping email '{}' to {}", subject, BOT_EMAIL)
    -28        return
    -29
    -30    send_email(
    -31        subject=subject,
    -32        body=(
    -33            f"Dear {name},\n"
    -34            + f"{msg.strip()}\n"
    -35            + "Kind regards,\n"
    -36            + "The bioimage.io bot 🦒\n"
    -37            + REPLY_HINT
    -38        ).replace(
    -39            "\n", "\n\n"  # respect newlines in markdown
    -40        ),
    -41        recipients=[email],
    -42    )
    +21    uploader = rv.get_uploader()
    +22
    +23    subject = f"{STATUS_UPDATE_SUBJECT}{rv.id} {rv.version} {subject_end.strip()}"
    +24    if uploader.email == BOT_EMAIL:
    +25        logger.info("skipping email '{}' to {}", subject, BOT_EMAIL)
    +26        return
    +27
    +28    send_email(
    +29        subject=subject,
    +30        body=(
    +31            f"Dear {uploader.name},\n"
    +32            + f"{msg.strip()}\n"
    +33            + "Kind regards,\n"
    +34            + "The bioimage.io bot 🦒\n"
    +35            + REPLY_HINT
    +36        ).replace(
    +37            "\n", "\n\n"  # respect newlines in markdown
    +38        ),
    +39        recipients=[uploader.email],
    +40    )
     
    @@ -207,19 +203,19 @@

    -
    45def send_email(subject: str, body: str, recipients: List[str]):
    -46    from_addr = BOT_EMAIL
    -47    to_addr = ", ".join(recipients)
    -48    body_html = markdown.markdown(body)
    -49    msg = MIMEText(body_html, "html")
    -50    msg["From"] = from_addr
    -51    msg["To"] = to_addr
    -52    msg["Subject"] = subject
    -53    with smtplib.SMTP_SSL(SMTP_SERVER, SMTP_PORT) as smtp_server:
    -54        _ = smtp_server.login(BOT_EMAIL, settings.mail_password.get_secret_value())
    -55        _ = smtp_server.sendmail(BOT_EMAIL, recipients, msg.as_string())
    -56
    -57    logger.info("Email '{}' sent to {}", subject, recipients)
    +            
    43def send_email(subject: str, body: str, recipients: List[str]):
    +44    from_addr = BOT_EMAIL
    +45    to_addr = ", ".join(recipients)
    +46    body_html = markdown.markdown(body)
    +47    msg = MIMEText(body_html, "html")
    +48    msg["From"] = from_addr
    +49    msg["To"] = to_addr
    +50    msg["Subject"] = subject
    +51    with smtplib.SMTP_SSL(SMTP_SERVER, SMTP_PORT) as smtp_server:
    +52        _ = smtp_server.login(BOT_EMAIL, settings.mail_password.get_secret_value())
    +53        _ = smtp_server.sendmail(BOT_EMAIL, recipients, msg.as_string())
    +54
    +55    logger.info("Email '{}' sent to {}", subject, recipients)
     
    diff --git a/bioimageio_collection_backoffice/remote_collection.html b/bioimageio_collection_backoffice/remote_collection.html index a15ef928..749b1ea7 100644 --- a/bioimageio_collection_backoffice/remote_collection.html +++ b/bioimageio_collection_backoffice/remote_collection.html @@ -152,21 +152,6 @@

    API Documentation

    - -
  • - Uploader - -
  • RecordBase @@ -367,37 +352,37 @@

    19 List, 20 Literal, 21 Mapping, - 22 NamedTuple, - 23 Optional, - 24 Sequence, - 25 Tuple, - 26 TypeVar, - 27 Union, - 28) - 29from urllib.parse import SplitResult, urlsplit, urlunsplit - 30 - 31import bioimageio.core - 32from bioimageio.spec import ValidationContext - 33from bioimageio.spec.common import HttpUrl - 34from bioimageio.spec.utils import ( - 35 identify_bioimageio_yaml_file_name, - 36 is_valid_bioimageio_yaml_name, - 37) - 38from loguru import logger - 39from pydantic import AnyUrl - 40from ruyaml import YAML - 41from typing_extensions import Concatenate, ParamSpec - 42 - 43from ._settings import settings - 44from ._thumbnails import create_thumbnails - 45from .collection_config import CollectionConfig - 46from .collection_json import ( - 47 AllVersions, - 48 CollectionEntry, - 49 CollectionJson, - 50 CollectionWebsiteConfig, - 51 ConceptSummary, - 52 ConceptVersion, + 22 Optional, + 23 Sequence, + 24 Tuple, + 25 TypeVar, + 26 Union, + 27) + 28from urllib.parse import SplitResult, urlsplit, urlunsplit + 29 + 30import bioimageio.core + 31from bioimageio.spec import ValidationContext + 32from bioimageio.spec.common import HttpUrl + 33from bioimageio.spec.utils import ( + 34 identify_bioimageio_yaml_file_name, + 35 is_valid_bioimageio_yaml_name, + 36) + 37from loguru import logger + 38from pydantic import AnyUrl + 39from ruyaml import YAML + 40from typing_extensions import Concatenate, ParamSpec, assert_never + 41 + 42from ._settings import settings + 43from ._thumbnails import create_thumbnails + 44from .collection_config import CollectionConfig + 45from .collection_json import ( + 46 AllVersions, + 47 CollectionEntry, + 48 CollectionJson, + 49 CollectionWebsiteConfig, + 50 ConceptSummary, + 51 ConceptVersion, + 52 Uploader, 53) 54from .db_structure.chat import Chat, Message 55from .db_structure.compatibility import ( @@ -917,728 +902,719 @@

    569 return None 570 571 - 572class Uploader(NamedTuple): - 573 email: Optional[str] - 574 name: str + 572@dataclass + 573class RecordBase(RemoteBase, ABC): + 574 """Base class for a `RecordDraft` and `Record`""" 575 - 576 - 577@dataclass - 578class RecordBase(RemoteBase, ABC): - 579 """Base class for a `RecordDraft` and `Record`""" - 580 - 581 concept_id: str - 582 concept: RecordConcept = field(init=False) + 576 concept_id: str + 577 concept: RecordConcept = field(init=False) + 578 + 579 def __post_init__(self): + 580 self.concept_id = self.concept_id.strip("/") + 581 assert self.concept_id, "missing concept_id" + 582 self.concept = RecordConcept(client=self.client, concept_id=self.concept_id) 583 - 584 def __post_init__(self): - 585 self.concept_id = self.concept_id.strip("/") - 586 assert self.concept_id, "missing concept_id" - 587 self.concept = RecordConcept(client=self.client, concept_id=self.concept_id) - 588 - 589 @property - 590 def collection(self): - 591 return self.concept.collection - 592 - 593 def exists(self): - 594 return bool(list(self.client.ls(self.rdf_path, only_files=True))) - 595 - 596 @property - 597 def rdf_path(self) -> str: - 598 return f"{self.folder}files/rdf.yaml" # TODO: transition to bioimageio.yaml eventually - 599 - 600 def get_rdf(self) -> Dict[str, Any]: - 601 rdf_data = self.client.load_file(self.rdf_path) - 602 if rdf_data is None: - 603 return {} - 604 else: - 605 return yaml.load(rdf_data.decode()) + 584 @property + 585 def collection(self): + 586 return self.concept.collection + 587 + 588 def exists(self): + 589 return bool(list(self.client.ls(self.rdf_path, only_files=True))) + 590 + 591 @property + 592 def rdf_path(self) -> str: + 593 return f"{self.folder}files/rdf.yaml" # TODO: transition to bioimageio.yaml eventually + 594 + 595 def get_rdf(self) -> Dict[str, Any]: + 596 rdf_data = self.client.load_file(self.rdf_path) + 597 if rdf_data is None: + 598 return {} + 599 else: + 600 return yaml.load(rdf_data.decode()) + 601 + 602 @property + 603 def rdf_url(self) -> str: + 604 """rdf.yaml download URL""" + 605 return self.client.get_file_url(self.rdf_path) 606 607 @property - 608 def rdf_url(self) -> str: - 609 """rdf.yaml download URL""" - 610 return self.client.get_file_url(self.rdf_path) - 611 - 612 @property - 613 def chat(self) -> Chat: - 614 return self._get_json(Chat) - 615 - 616 def add_log_entry(self, log_entry: LogEntry): - 617 """add a log entry""" - 618 self.extend_log(Log(entries=[log_entry])) - 619 - 620 def extend_log( - 621 self, - 622 extension: Log, - 623 ): - 624 """extend log file""" - 625 self._update_json(extension) - 626 - 627 def extend_chat( - 628 self, - 629 extension: Chat, - 630 ): - 631 """extend chat file""" - 632 self._update_json(extension) - 633 - 634 def get_uploader(self): - 635 rdf = self.get_rdf() - 636 try: - 637 uploader = rdf["uploader"] - 638 email = uploader["email"] - 639 name = uploader.get( - 640 "name", f"{rdf.get('type', 'bioimage.io resource')} contributor" - 641 ) - 642 except Exception as e: - 643 logger.error("failed to extract uploader from rdf: {}", e) - 644 email = None - 645 name = "bioimage.io resource contributor" - 646 - 647 return Uploader(email=email, name=name) - 648 - 649 def get_file_url(self, path: str): - 650 return self.client.get_file_url(f"{self.folder}files/{path}") - 651 - 652 def get_file_urls(self): - 653 return self.client.get_file_urls(f"{self.folder}files/") - 654 - 655 def get_file_paths(self): - 656 return [ - 657 f"{self.folder}files/{p}" for p in self.client.ls(f"{self.folder}files/") - 658 ] - 659 - 660 def get_all_compatibility_reports(self, tool: Optional[str] = None): - 661 """get all compatibility reports""" - 662 tools = [ - 663 d[:-5] - 664 for d in self.client.ls(f"{self.folder}compatibility/", only_files=True) - 665 if d.endswith(".json") and (tool is None or d[:-5] == tool) - 666 ] - 667 reports_data = { - 668 t: self.client.load_file(self.get_compatibility_report_path(t)) - 669 for t in tools - 670 } - 671 return [ - 672 CompatibilityReport.model_validate({**json.loads(d), "tool": t}) - 673 for t, d in reports_data.items() - 674 if d is not None - 675 ] - 676 - 677 def get_compatibility_report_path(self, tool: str): - 678 return f"{self.folder}compatibility/{tool}.json" - 679 - 680 def set_compatibility_report(self, report: CompatibilityReport) -> None: - 681 path = self.get_compatibility_report_path(report.tool) - 682 self.client.put_and_cache(path, report.model_dump_json().encode()) - 683 - 684 - 685@dataclass - 686class RecordDraft(RecordBase): - 687 """A staged resource version""" - 688 - 689 version: ClassVar[str] = "draft" - 690 doi: ClassVar[None] = None - 691 - 692 @property - 693 def folder(self) -> str: - 694 """The S3 (sub)prefix of this version - 695 (**sub**)prefix, because the client may prefix this prefix""" - 696 return f"{self.id}/" - 697 - 698 @property - 699 def id(self) -> str: - 700 return f"{self.concept_id}/draft" + 608 def chat(self) -> Chat: + 609 return self._get_json(Chat) + 610 + 611 def add_log_entry(self, log_entry: LogEntry): + 612 """add a log entry""" + 613 self.extend_log(Log(entries=[log_entry])) + 614 + 615 def extend_log( + 616 self, + 617 extension: Log, + 618 ): + 619 """extend log file""" + 620 self._update_json(extension) + 621 + 622 def extend_chat( + 623 self, + 624 extension: Chat, + 625 ): + 626 """extend chat file""" + 627 self._update_json(extension) + 628 + 629 def get_uploader(self): + 630 rdf = self.get_rdf() + 631 return Uploader.model_validate(rdf["uploader"]) + 632 + 633 def get_file_url(self, path: str): + 634 return self.client.get_file_url(f"{self.folder}files/{path}") + 635 + 636 def get_file_urls(self): + 637 return self.client.get_file_urls(f"{self.folder}files/") + 638 + 639 def get_file_paths(self): + 640 return [ + 641 f"{self.folder}files/{p}" for p in self.client.ls(f"{self.folder}files/") + 642 ] + 643 + 644 def get_all_compatibility_reports(self, tool: Optional[str] = None): + 645 """get all compatibility reports""" + 646 tools = [ + 647 d[:-5] + 648 for d in self.client.ls(f"{self.folder}compatibility/", only_files=True) + 649 if d.endswith(".json") and (tool is None or d[:-5] == tool) + 650 ] + 651 reports_data = { + 652 t: self.client.load_file(self.get_compatibility_report_path(t)) + 653 for t in tools + 654 } + 655 return [ + 656 CompatibilityReport.model_validate({**json.loads(d), "tool": t}) + 657 for t, d in reports_data.items() + 658 if d is not None + 659 ] + 660 + 661 def get_compatibility_report_path(self, tool: str): + 662 return f"{self.folder}compatibility/{tool}.json" + 663 + 664 def set_compatibility_report(self, report: CompatibilityReport) -> None: + 665 path = self.get_compatibility_report_path(report.tool) + 666 self.client.put_and_cache(path, report.model_dump_json().encode()) + 667 + 668 + 669@dataclass + 670class RecordDraft(RecordBase): + 671 """A staged resource version""" + 672 + 673 version: ClassVar[str] = "draft" + 674 doi: ClassVar[None] = None + 675 + 676 @property + 677 def folder(self) -> str: + 678 """The S3 (sub)prefix of this version + 679 (**sub**)prefix, because the client may prefix this prefix""" + 680 return f"{self.id}/" + 681 + 682 @property + 683 def id(self) -> str: + 684 return f"{self.concept_id}/draft" + 685 + 686 @property + 687 def info(self) -> DraftInfo: + 688 return self._get_json(DraftInfo) + 689 + 690 def update_info(self, update: DraftInfo): + 691 self._update_json(update) + 692 + 693 @property + 694 def bioimageio_url(self): + 695 return f"https://bioimage.io/#/?repo={self.collection.client.get_file_url('collection_draft.json')}&id={self.concept_id}" + 696 + 697 @property + 698 def concept_doi(self): + 699 """concept DOI of Zenodo record""" + 700 return self.concept.doi 701 - 702 @property - 703 def info(self) -> DraftInfo: - 704 return self._get_json(DraftInfo) - 705 - 706 def update_info(self, update: DraftInfo): - 707 self._update_json(update) - 708 - 709 @property - 710 def bioimageio_url(self): - 711 return f"https://bioimage.io/#/?repo={self.collection.client.get_file_url('collection_draft.json')}&id={self.concept_id}" - 712 - 713 @property - 714 def concept_doi(self): - 715 """concept DOI of Zenodo record""" - 716 return self.concept.doi - 717 - 718 @log - 719 @lock_concept - 720 def unpack(self, package_url: str): - 721 previous_versions = self.concept.get_published_versions() - 722 if not previous_versions: - 723 previous_rdf = None - 724 else: - 725 previous_rdf = previous_versions[0].get_rdf() + 702 @log + 703 @lock_concept + 704 def unpack(self, package_url: str): + 705 previous_versions = self.concept.get_published_versions() + 706 if not previous_versions: + 707 previous_rdf = None + 708 else: + 709 previous_rdf = previous_versions[0].get_rdf() + 710 + 711 # ensure we have a chat.json + 712 self.extend_chat(Chat()) + 713 + 714 self.add_log_entry( + 715 LogEntry( + 716 message="new status: unpacking", + 717 details={"package_url": package_url}, + 718 ) + 719 ) + 720 + 721 # Download the model zip file + 722 try: + 723 remotezip = urllib.request.urlopen(package_url) + 724 except Exception as e: + 725 raise RuntimeError(f"failed to open {package_url}: {e}") 726 - 727 # ensure we have a chat.json - 728 self.extend_chat(Chat()) - 729 - 730 self.add_log_entry( - 731 LogEntry( - 732 message="new status: unpacking", - 733 details={"package_url": package_url}, - 734 ) - 735 ) - 736 - 737 # Download the model zip file - 738 try: - 739 remotezip = urllib.request.urlopen(package_url) - 740 except Exception as e: - 741 raise RuntimeError(f"failed to open {package_url}: {e}") + 727 zipinmemory = io.BytesIO(remotezip.read()) + 728 + 729 # Unzip the zip file + 730 zipobj = zipfile.ZipFile(zipinmemory) + 731 + 732 file_names = set(zipobj.namelist()) + 733 bioimageio_yaml_file_name = identify_bioimageio_yaml_file_name(file_names) + 734 + 735 rdf: Dict[Any, Any] = yaml.load( + 736 zipobj.open(bioimageio_yaml_file_name).read().decode() + 737 ) + 738 if not isinstance(rdf, dict): + 739 raise ValueError( + 740 f"Expected {bioimageio_yaml_file_name} to hold a dictionary" + 741 ) 742 - 743 zipinmemory = io.BytesIO(remotezip.read()) - 744 - 745 # Unzip the zip file - 746 zipobj = zipfile.ZipFile(zipinmemory) - 747 - 748 file_names = set(zipobj.namelist()) - 749 bioimageio_yaml_file_name = identify_bioimageio_yaml_file_name(file_names) + 743 if (rdf_id := rdf.get("id")) is None: + 744 rdf["id"] = self.concept_id + 745 elif rdf_id != self.concept_id: + 746 raise ValueError( + 747 f"Expected package for {self.concept_id}, " + 748 + f"but found id {rdf_id} in {package_url}" + 749 ) 750 - 751 rdf: Dict[Any, Any] = yaml.load( - 752 zipobj.open(bioimageio_yaml_file_name).read().decode() - 753 ) - 754 if not isinstance(rdf, dict): - 755 raise ValueError( - 756 f"Expected {bioimageio_yaml_file_name} to hold a dictionary" - 757 ) - 758 - 759 if (rdf_id := rdf.get("id")) is None: - 760 rdf["id"] = self.concept_id - 761 elif rdf_id != self.concept_id: - 762 raise ValueError( - 763 f"Expected package for {self.concept_id}, " - 764 + f"but found id {rdf_id} in {package_url}" - 765 ) - 766 - 767 if "name" not in rdf: - 768 raise ValueError(f"Missing 'name' in {package_url}") - 769 - 770 self._set_status( - 771 UnpackingStatus(description=f"unzipping {package_url} to {self.folder}") - 772 ) - 773 - 774 collection_data = self.client.load_file("collection.json") - 775 assert collection_data is not None - 776 collection = json.loads(collection_data) - 777 for e in collection["collection"]: - 778 if e["name"] == rdf["name"]: - 779 if e["id"] != rdf["id"]: - 780 self.add_log_entry( - 781 LogEntry( - 782 message=f"error: Another resource with name='{rdf['name']}' already exists ({e['id']})" - 783 ) - 784 ) - 785 break - 786 - 787 # set matching id_emoji - 788 rdf["id_emoji"] = self.collection.config.id_parts.get_icon(self.concept_id) - 789 if rdf["id_emoji"] is None: - 790 self.add_log_entry( - 791 LogEntry(message=f"error: Failed to get icon for {self.concept_id}") - 792 ) - 793 - 794 if "id" not in rdf: - 795 raise ValueError("Missing `id` field") + 751 if "name" not in rdf: + 752 raise ValueError(f"Missing 'name' in {package_url}") + 753 + 754 self._set_status( + 755 UnpackingStatus(description=f"unzipping {package_url} to {self.folder}") + 756 ) + 757 + 758 collection_data = self.client.load_file("collection.json") + 759 assert collection_data is not None + 760 collection = json.loads(collection_data) + 761 for e in collection["collection"]: + 762 if e["name"] == rdf["name"]: + 763 if e["id"] != rdf["id"]: + 764 self.add_log_entry( + 765 LogEntry( + 766 message=f"error: Another resource with name='{rdf['name']}' already exists ({e['id']})" + 767 ) + 768 ) + 769 break + 770 + 771 # set matching id_emoji + 772 rdf["id_emoji"] = self.collection.config.id_parts.get_icon(self.concept_id) + 773 if rdf["id_emoji"] is None: + 774 self.add_log_entry( + 775 LogEntry(message=f"error: Failed to get icon for {self.concept_id}") + 776 ) + 777 + 778 if "id" not in rdf: + 779 raise ValueError("Missing `id` field") + 780 + 781 if not str(rdf["id"]): + 782 raise ValueError(f"Invalid `id`: {rdf['id']}") + 783 + 784 if "uploader" not in rdf: + 785 for r in self.collection.config.reviewers: + 786 if settings.bioimageio_user_id == r.id: + 787 rdf["uploader"] = dict(name=r.name, email=r.email) + 788 break + 789 else: + 790 raise ValueError("RDF is missing `uploader.email` field.") + 791 + 792 elif not isinstance(rdf["uploader"], dict) or "email" not in rdf["uploader"]: + 793 raise ValueError("RDF is missing `uploader.email` field.") + 794 elif not isinstance(rdf["uploader"]["email"], str): + 795 raise ValueError("RDF has invalid `uploader.email` field.") 796 - 797 if not str(rdf["id"]): - 798 raise ValueError(f"Invalid `id`: {rdf['id']}") - 799 - 800 if "uploader" not in rdf: - 801 for r in self.collection.config.reviewers: - 802 if settings.bioimageio_user_id == r.id: - 803 rdf["uploader"] = dict(name=r.name, email=r.email) - 804 break - 805 else: - 806 raise ValueError("RDF is missing `uploader.email` field.") - 807 - 808 elif not isinstance(rdf["uploader"], dict) or "email" not in rdf["uploader"]: - 809 raise ValueError("RDF is missing `uploader.email` field.") - 810 elif not isinstance(rdf["uploader"]["email"], str): - 811 raise ValueError("RDF has invalid `uploader.email` field.") - 812 - 813 uploader: Any = rdf["uploader"]["email"] - 814 if previous_rdf is not None: - 815 prev_authors: List[Dict[str, str]] = previous_rdf["authors"] - 816 assert isinstance(prev_authors, list) - 817 prev_maintainers: List[Dict[str, str]] = ( - 818 previous_rdf.get("maintainers", []) + prev_authors - 819 ) - 820 maintainer_emails = [a["email"] for a in prev_maintainers if "email" in a] - 821 if ( - 822 uploader != previous_rdf.get("uploader", {}).get("email", BOT_EMAIL) - 823 and uploader not in maintainer_emails - 824 and uploader not in [r.email for r in self.collection.config.reviewers] - 825 ): - 826 raise ValueError( - 827 f"uploader '{uploader}' is not a maintainer of '{self.id}' nor a registered bioimageio reviewer." - 828 ) - 829 - 830 # clean up any previous draft files - 831 self.client.rm_dir(self.folder + "files/") + 797 uploader: Any = rdf["uploader"]["email"] + 798 if previous_rdf is not None: + 799 prev_authors: List[Dict[str, str]] = previous_rdf["authors"] + 800 assert isinstance(prev_authors, list) + 801 prev_maintainers: List[Dict[str, str]] = ( + 802 previous_rdf.get("maintainers", []) + prev_authors + 803 ) + 804 maintainer_emails = [a["email"] for a in prev_maintainers if "email" in a] + 805 if ( + 806 uploader != previous_rdf.get("uploader", {}).get("email", BOT_EMAIL) + 807 and uploader not in maintainer_emails + 808 and uploader not in [r.email for r in self.collection.config.reviewers] + 809 ): + 810 raise ValueError( + 811 f"uploader '{uploader}' is not a maintainer of '{self.id}' nor a registered bioimageio reviewer." + 812 ) + 813 + 814 # clean up any previous draft files + 815 self.client.rm_dir(self.folder + "files/") + 816 + 817 # upload new draft files + 818 def upload(file_name: str, file_data: bytes): + 819 path = f"{self.folder}files/{file_name}" + 820 self.client.put(path, io.BytesIO(file_data), length=len(file_data)) + 821 + 822 thumbnails = create_thumbnails(rdf, zipobj) + 823 config = rdf.setdefault("config", {}) + 824 if isinstance(config, dict): + 825 bioimageio_config: Any = config.setdefault("bioimageio", {}) + 826 if isinstance(bioimageio_config, dict): + 827 thumbnail_config: Any = bioimageio_config.setdefault("thumbnails", {}) + 828 if isinstance(thumbnail_config, dict): + 829 for oname, (tname, tdata) in thumbnails.items(): + 830 upload(tname, tdata) + 831 thumbnail_config[oname] = tname 832 - 833 # upload new draft files - 834 def upload(file_name: str, file_data: bytes): - 835 path = f"{self.folder}files/{file_name}" - 836 self.client.put(path, io.BytesIO(file_data), length=len(file_data)) - 837 - 838 thumbnails = create_thumbnails(rdf, zipobj) - 839 config = rdf.setdefault("config", {}) - 840 if isinstance(config, dict): - 841 bioimageio_config: Any = config.setdefault("bioimageio", {}) - 842 if isinstance(bioimageio_config, dict): - 843 thumbnail_config: Any = bioimageio_config.setdefault("thumbnails", {}) - 844 if isinstance(thumbnail_config, dict): - 845 for oname, (tname, tdata) in thumbnails.items(): - 846 upload(tname, tdata) - 847 thumbnail_config[oname] = tname - 848 - 849 if rdf["id_emoji"] is not None: - 850 # we have a valid new collection id - 851 # remove any nickname from config.bioimageio - 852 # that may have been kept if reusing an older model - 853 bioimageio_config.pop("nickname", None) - 854 bioimageio_config.pop("nickname_icon", None) + 833 if rdf["id_emoji"] is not None: + 834 # we have a valid new collection id + 835 # remove any nickname from config.bioimageio + 836 # that may have been kept if reusing an older model + 837 bioimageio_config.pop("nickname", None) + 838 bioimageio_config.pop("nickname_icon", None) + 839 + 840 rdf_io = io.BytesIO() + 841 yaml.dump(rdf, rdf_io) + 842 rdf_data = rdf_io.getvalue() + 843 upload("rdf.yaml", rdf_data) + 844 + 845 file_names.remove(bioimageio_yaml_file_name) + 846 for other in {fn for fn in file_names if is_valid_bioimageio_yaml_name(fn)}: + 847 logger.warning("ignoring alternative rdf.yaml source '{other}'") + 848 file_names.remove(other) + 849 + 850 for file_name in file_names: + 851 file_data = zipobj.open(file_name).read() + 852 upload(file_name, file_data) + 853 + 854 self._set_status(UnpackedStatus()) 855 - 856 rdf_io = io.BytesIO() - 857 yaml.dump(rdf, rdf_io) - 858 rdf_data = rdf_io.getvalue() - 859 upload("rdf.yaml", rdf_data) - 860 - 861 file_names.remove(bioimageio_yaml_file_name) - 862 for other in {fn for fn in file_names if is_valid_bioimageio_yaml_name(fn)}: - 863 logger.warning("ignoring alternative rdf.yaml source '{other}'") - 864 file_names.remove(other) - 865 - 866 for file_name in file_names: - 867 file_data = zipobj.open(file_name).read() - 868 upload(file_name, file_data) - 869 - 870 self._set_status(UnpackedStatus()) - 871 - 872 def set_testing_status(self, description: str): - 873 self._set_status(TestingStatus(description=description)) - 874 - 875 def await_review(self): - 876 """set status to 'awaiting review'""" - 877 self._set_status(AwaitingReviewStatus()) - 878 - 879 @reviewer_role - 880 def request_changes(self, reviewer: str, reason: str): - 881 # map reviewer id to name - 882 for r in self.collection.config.reviewers: - 883 if reviewer == r.id: - 884 reviewer = r.name - 885 break - 886 - 887 self._set_status(ChangesRequestedStatus(description=reason)) - 888 self.extend_chat( - 889 Chat( - 890 messages=[ - 891 Message( - 892 author="system", text=f"{reviewer} requested changes: {reason}" - 893 ) - 894 ] - 895 ) - 896 ) - 897 - 898 @log - 899 @reviewer_role - 900 @lock_concept - 901 def publish(self, reviewer: str) -> Record: - 902 """mark this staged version candidate as accepted and try to publish it""" - 903 # map reviewer id to name - 904 for r in self.collection.config.reviewers: - 905 if reviewer == r.id: - 906 reviewer = r.name - 907 break - 908 - 909 self._set_status(AcceptedStatus()) - 910 self.extend_chat( - 911 Chat( - 912 messages=[ - 913 Message( - 914 author="system", - 915 text=f"{reviewer} accepted {self.id} {self.version}", - 916 ) - 917 ] - 918 ) - 919 ) + 856 def set_testing_status(self, description: str): + 857 self._set_status(TestingStatus(description=description)) + 858 + 859 def await_review(self): + 860 """set status to 'awaiting review'""" + 861 self._set_status(AwaitingReviewStatus()) + 862 + 863 @reviewer_role + 864 def request_changes(self, reviewer: str, reason: str): + 865 # map reviewer id to name + 866 for r in self.collection.config.reviewers: + 867 if reviewer == r.id: + 868 reviewer = r.name + 869 break + 870 + 871 self._set_status(ChangesRequestedStatus(description=reason)) + 872 self.extend_chat( + 873 Chat( + 874 messages=[ + 875 Message( + 876 author="system", text=f"{reviewer} requested changes: {reason}" + 877 ) + 878 ] + 879 ) + 880 ) + 881 + 882 @log + 883 @reviewer_role + 884 @lock_concept + 885 def publish(self, reviewer: str) -> Record: + 886 """mark this staged version candidate as accepted and try to publish it""" + 887 # map reviewer id to name + 888 for r in self.collection.config.reviewers: + 889 if reviewer == r.id: + 890 reviewer = r.name + 891 break + 892 + 893 self._set_status(AcceptedStatus()) + 894 self.extend_chat( + 895 Chat( + 896 messages=[ + 897 Message( + 898 author="system", + 899 text=f"{reviewer} accepted {self.id} {self.version}", + 900 ) + 901 ] + 902 ) + 903 ) + 904 + 905 logger.debug("Publishing {}", self.folder) + 906 + 907 rdf_data = self.client.load_file(self.rdf_path) + 908 if rdf_data is None: + 909 raise RuntimeError(f"Failed to load staged RDF from {self.rdf_path}") + 910 + 911 rdf: Dict[Any, Any] = yaml.load(rdf_data.decode()) + 912 assert isinstance(rdf, dict) + 913 version = rdf.get("version", "1") + 914 if not isinstance(version, (int, float, str)): + 915 raise ValueError(f"Invalid `version`: '{version}'") + 916 else: + 917 version = str(version) + 918 if version in {v.version for v in self.concept.get_published_versions()}: + 919 raise ValueError(f"Trying to publish version '{version}' again!") 920 - 921 logger.debug("Publishing {}", self.folder) - 922 - 923 rdf_data = self.client.load_file(self.rdf_path) - 924 if rdf_data is None: - 925 raise RuntimeError(f"Failed to load staged RDF from {self.rdf_path}") + 921 # remember previously published concept doi + 922 if previous_versions := self.concept.get_published_versions(): + 923 concept_doi = previous_versions[0].info.concept_doi + 924 else: + 925 concept_doi = None 926 - 927 rdf: Dict[Any, Any] = yaml.load(rdf_data.decode()) - 928 assert isinstance(rdf, dict) - 929 version = rdf.get("version", "1") - 930 if not isinstance(version, (int, float, str)): - 931 raise ValueError(f"Invalid `version`: '{version}'") - 932 else: - 933 version = str(version) - 934 if version in {v.version for v in self.concept.get_published_versions()}: - 935 raise ValueError(f"Trying to publish version '{version}' again!") - 936 - 937 # remember previously published concept doi - 938 if previous_versions := self.concept.get_published_versions(): - 939 concept_doi = previous_versions[0].info.concept_doi - 940 else: - 941 concept_doi = None - 942 - 943 published = Record( - 944 client=self.client, concept_id=self.concept_id, version=version - 945 ) - 946 - 947 # move all files - 948 self.client.cp_dir(self.folder, published.folder) - 949 - 950 # overwrite rdf.yaml with updated version_number - 951 stream = io.StringIO() - 952 yaml.dump(rdf, stream) - 953 rdf_data = stream.getvalue().encode() - 954 self.client.put(self.rdf_path, io.BytesIO(rdf_data), length=len(rdf_data)) - 955 self.client.rm_dir(self.folder) + 927 published = Record( + 928 client=self.client, concept_id=self.concept_id, version=version + 929 ) + 930 + 931 # move all files + 932 self.client.cp_dir(self.folder, published.folder) + 933 + 934 # overwrite rdf.yaml with updated version_number + 935 stream = io.StringIO() + 936 yaml.dump(rdf, stream) + 937 rdf_data = stream.getvalue().encode() + 938 self.client.put(self.rdf_path, io.BytesIO(rdf_data), length=len(rdf_data)) + 939 self.client.rm_dir(self.folder) + 940 + 941 published.update_info(RecordInfo(concept_doi=concept_doi)) + 942 return published + 943 + 944 def _set_status(self, value: DraftStatus): + 945 current_status = self.info.status + 946 self.add_log_entry( + 947 LogEntry(message=f"new status: {value.description}", details=value) + 948 ) + 949 if value.name == "testing" or current_status is None: + 950 pass + 951 elif value.step < current_status.step: + 952 logger.warning("Proceeding from {} to {}", current_status, value) + 953 + 954 self._update_json(DraftInfo(status=value)) + 955 956 - 957 published.update_info(RecordInfo(concept_doi=concept_doi)) - 958 return published - 959 - 960 def _set_status(self, value: DraftStatus): - 961 current_status = self.info.status - 962 self.add_log_entry( - 963 LogEntry(message=f"new status: {value.description}", details=value) - 964 ) - 965 if value.name == "testing" or current_status is None: - 966 pass - 967 elif value.step < current_status.step: - 968 logger.warning("Proceeding from {} to {}", current_status, value) - 969 - 970 self._update_json(DraftInfo(status=value)) - 971 + 957@dataclass + 958class Record(RecordBase): + 959 """A representation of a published resource version""" + 960 + 961 version: str + 962 """a (semantic) version string""" + 963 + 964 @property + 965 def id(self) -> str: + 966 return f"{self.concept_id}/{self.version}" + 967 + 968 @property + 969 def doi(self): + 970 """version specific DOI of Zenodo record""" + 971 return self.info.doi 972 - 973@dataclass - 974class Record(RecordBase): - 975 """A representation of a published resource version""" - 976 - 977 version: str - 978 """a (semantic) version string""" - 979 - 980 @property - 981 def id(self) -> str: - 982 return f"{self.concept_id}/{self.version}" - 983 - 984 @property - 985 def doi(self): - 986 """version specific DOI of Zenodo record""" - 987 return self.info.doi + 973 @property + 974 def concept_doi(self): + 975 """concept DOI of Zenodo record""" + 976 return self.info.concept_doi + 977 + 978 @property + 979 def bioimageio_url(self): + 980 return f"https://bioimage.io/#/?id={self.concept_id}" + 981 + 982 @property + 983 def info(self) -> RecordInfo: + 984 return self._get_json(RecordInfo) + 985 + 986 def update_info(self, update: RecordInfo): + 987 self._update_json(update) 988 - 989 @property - 990 def concept_doi(self): - 991 """concept DOI of Zenodo record""" - 992 return self.info.concept_doi - 993 - 994 @property - 995 def bioimageio_url(self): - 996 return f"https://bioimage.io/#/?id={self.concept_id}" - 997 - 998 @property - 999 def info(self) -> RecordInfo: -1000 return self._get_json(RecordInfo) -1001 -1002 def update_info(self, update: RecordInfo): -1003 self._update_json(update) -1004 -1005 def set_dois(self, *, doi: str, concept_doi: str): -1006 if self.doi is not None: -1007 raise ValueError(f"May not overwrite existing doi={self.doi} with {doi}") -1008 if self.concept_doi is not None: -1009 raise ValueError( -1010 f"May not overwrite existing concept_doi={self.concept_doi} with {concept_doi}" -1011 ) -1012 -1013 self._update_json(RecordInfo(doi=doi, concept_doi=concept_doi)) -1014 -1015 -1016def get_remote_resource_version( -1017 client: Client, concept_id: str, version: Union[int, float, str] -1018): -1019 version = str(version).strip("/") -1020 if version == "draft": -1021 rv = RecordDraft(client=client, concept_id=concept_id) -1022 elif version == "latest": -1023 versions = RecordConcept( -1024 client=client, concept_id=concept_id -1025 ).get_published_versions() -1026 if versions: -1027 rv = versions[0] -1028 else: -1029 raise ValueError( -1030 f"no published version of '{concept_id}' found." -1031 + f" Try '{concept_id}/draft' for the unpublished draft." -1032 ) -1033 else: -1034 rv = Record(client=client, concept_id=concept_id, version=version) -1035 -1036 if not rv.exists(): -1037 raise ValueError(f"'{rv.id}' not found") + 989 def set_dois(self, *, doi: str, concept_doi: str): + 990 if self.doi is not None: + 991 raise ValueError(f"May not overwrite existing doi={self.doi} with {doi}") + 992 if self.concept_doi is not None: + 993 raise ValueError( + 994 f"May not overwrite existing concept_doi={self.concept_doi} with {concept_doi}" + 995 ) + 996 + 997 self._update_json(RecordInfo(doi=doi, concept_doi=concept_doi)) + 998 + 999 +1000def get_remote_resource_version( +1001 client: Client, concept_id: str, version: Union[int, float, str] +1002): +1003 version = str(version).strip("/") +1004 if version == "draft": +1005 rv = RecordDraft(client=client, concept_id=concept_id) +1006 elif version == "latest": +1007 versions = RecordConcept( +1008 client=client, concept_id=concept_id +1009 ).get_published_versions() +1010 if versions: +1011 rv = versions[0] +1012 else: +1013 raise ValueError( +1014 f"no published version of '{concept_id}' found." +1015 + f" Try '{concept_id}/draft' for the unpublished draft." +1016 ) +1017 else: +1018 rv = Record(client=client, concept_id=concept_id, version=version) +1019 +1020 if not rv.exists(): +1021 raise ValueError(f"'{rv.id}' not found") +1022 +1023 return rv +1024 +1025 +1026def maybe_swap_with_thumbnail( +1027 src: Union[Any, Dict[Any, Any], List[Any]], thumbnails: Mapping[str, str] +1028) -> Any: +1029 if isinstance(src, dict): +1030 src_dict: Dict[Any, Any] = src +1031 return { +1032 k: maybe_swap_with_thumbnail(v, thumbnails) for k, v in src_dict.items() +1033 } +1034 +1035 if isinstance(src, list): +1036 src_list: List[Any] = src +1037 return [maybe_swap_with_thumbnail(s, thumbnails) for s in src_list] 1038 -1039 return rv -1040 -1041 -1042def maybe_swap_with_thumbnail( -1043 src: Union[Any, Dict[Any, Any], List[Any]], thumbnails: Mapping[str, str] -1044) -> Any: -1045 if isinstance(src, dict): -1046 src_dict: Dict[Any, Any] = src -1047 return { -1048 k: maybe_swap_with_thumbnail(v, thumbnails) for k, v in src_dict.items() -1049 } -1050 -1051 if isinstance(src, list): -1052 src_list: List[Any] = src -1053 return [maybe_swap_with_thumbnail(s, thumbnails) for s in src_list] -1054 -1055 if isinstance(src, str) and not src.startswith("https://"): -1056 clean_name = Path(src).name # remove any leading './' -1057 if clean_name in thumbnails: -1058 return thumbnails[clean_name] -1059 else: -1060 return src -1061 -1062 return src -1063 -1064 -1065def resolve_relative_path( -1066 src: Union[Any, Dict[Any, Any], List[Any]], parsed_root: SplitResult -1067) -> Any: -1068 if isinstance(src, dict): -1069 src_dict: Dict[Any, Any] = src -1070 return {k: resolve_relative_path(v, parsed_root) for k, v in src_dict.items()} -1071 -1072 if isinstance(src, list): -1073 src_list: List[Any] = src -1074 return [resolve_relative_path(s, parsed_root) for s in src_list] +1039 if isinstance(src, str) and not src.startswith("https://"): +1040 clean_name = Path(src).name # remove any leading './' +1041 if clean_name in thumbnails: +1042 return thumbnails[clean_name] +1043 else: +1044 return src +1045 +1046 return src +1047 +1048 +1049def resolve_relative_path( +1050 src: Union[Any, Dict[Any, Any], List[Any]], parsed_root: SplitResult +1051) -> Any: +1052 if isinstance(src, dict): +1053 src_dict: Dict[Any, Any] = src +1054 return {k: resolve_relative_path(v, parsed_root) for k, v in src_dict.items()} +1055 +1056 if isinstance(src, list): +1057 src_list: List[Any] = src +1058 return [resolve_relative_path(s, parsed_root) for s in src_list] +1059 +1060 if isinstance(src, str): +1061 if src.startswith("http") or src.startswith("/") or "." not in src: +1062 return src +1063 else: +1064 return HttpUrl( +1065 urlunsplit( +1066 ( +1067 parsed_root.scheme, +1068 parsed_root.netloc, +1069 parsed_root.path + "/" + src, +1070 parsed_root.query, +1071 parsed_root.fragment, +1072 ) +1073 ) +1074 ) 1075 -1076 if isinstance(src, str): -1077 if src.startswith("http") or src.startswith("/") or "." not in src: -1078 return src -1079 else: -1080 return HttpUrl( -1081 urlunsplit( -1082 ( -1083 parsed_root.scheme, -1084 parsed_root.netloc, -1085 parsed_root.path + "/" + src, -1086 parsed_root.query, -1087 parsed_root.fragment, -1088 ) -1089 ) -1090 ) -1091 -1092 return src -1093 -1094 -1095def create_collection_entries( -1096 versions: Sequence[Union[Record, RecordDraft]], -1097) -> Tuple[List[CollectionEntry], IdMap]: -1098 """create collection entries from a single (draft) record""" -1099 if not versions: -1100 return [], {} -1101 -1102 rdf: Optional[Dict[str, Any]] = None -1103 record_version: Optional[Union[Record, RecordDraft]] = None -1104 concept: Optional[str] = None -1105 id_info: Optional[IdInfo] = None -1106 -1107 id_map: Dict[str, IdInfo] = {} -1108 version_infos: List[VersionInfo] = [] -1109 for record_version in versions[::-1]: # process oldest to newest -1110 rdf_version_data = record_version.client.load_file(record_version.rdf_path) -1111 if rdf_version_data is None: -1112 logger.error("failed to load {}", record_version.rdf_path) -1113 continue -1114 -1115 id_info = IdInfo( -1116 source=record_version.rdf_url, -1117 sha256=hashlib.sha256(rdf_version_data).hexdigest(), -1118 ) -1119 id_map[record_version.id] = id_info -1120 id_map[record_version.concept_id] = id_info -1121 -1122 if record_version.doi is not None: -1123 id_map[record_version.doi] = id_info -1124 -1125 if record_version.concept_doi is not None: -1126 id_map[record_version.concept_doi] = id_info -1127 -1128 rdf = record_version.get_rdf() -1129 if (version_id := rdf["id"]) is not None and version_id not in id_map: -1130 id_map[version_id] = id_info -1131 -1132 if rdf["id"].startswith("10.5281/zenodo."): -1133 # legacy models -1134 concept_end = rdf["id"].rfind("/") -1135 concept = rdf["id"][:concept_end] -1136 else: -1137 concept = rdf["id"] -1138 -1139 assert concept is not None -1140 id_map[concept] = id_info -1141 -1142 version_infos.append( -1143 VersionInfo( -1144 v=record_version.version, -1145 created=record_version.info.created, -1146 doi=( -1147 None -1148 if isinstance(record_version, RecordDraft) -1149 else record_version.info.doi -1150 ), -1151 ) -1152 ) -1153 compat_reports = record_version.get_all_compatibility_reports() -1154 compat_tests: Dict[str, List[TestSummaryEntry]] = {} -1155 bioimageio_status = "failed" -1156 for r in compat_reports: -1157 if r.status == "not-applicable": -1158 continue -1159 -1160 if r.tool == f"bioimageio.core_{bioimageio.core.__version__}": -1161 bioimageio_status = r.status -1162 -1163 compat_tests.setdefault(r.tool, []).append( -1164 TestSummaryEntry( -1165 error=r.error, -1166 name="compatibility check", -1167 status=r.status, -1168 traceback=None, -1169 warnings=None, -1170 ) -1171 ) -1172 -1173 test_summary = TestSummary( -1174 status=bioimageio_status, tests=compat_tests -1175 ).model_dump(mode="json") -1176 record_version.client.put_yaml( -1177 test_summary, f"{record_version.folder}test_summary.yaml" -1178 ) -1179 -1180 assert rdf is not None -1181 assert record_version is not None -1182 assert concept is not None -1183 assert id_info is not None -1184 -1185 # create an explicit entry only for the latest version -1186 # (all versions are referenced under `versions`) -1187 # upload 'versions.json' summary -1188 if isinstance(record_version, Record): -1189 versions_info = VersionsInfo( -1190 concept_doi=record_version.concept_doi, versions=version_infos[::-1] -1191 ) -1192 record_version.concept.client.put_json( -1193 f"{record_version.concept.folder}versions.json", -1194 versions_info.model_dump(mode="json"), -1195 ) -1196 -1197 try: -1198 # legacy nickname -1199 nickname = str(rdf["config"]["bioimageio"]["nickname"]) -1200 nickname_icon = str(rdf["config"]["bioimageio"]["nickname_icon"]) -1201 except KeyError: -1202 # id is nickname -1203 nickname = None -1204 nickname_icon = rdf.get("id_emoji") +1076 return src +1077 +1078 +1079def create_collection_entries( +1080 versions: Sequence[Union[Record, RecordDraft]], +1081) -> Tuple[List[CollectionEntry], IdMap]: +1082 """create collection entries from a single (draft) record""" +1083 if not versions: +1084 return [], {} +1085 +1086 rdf: Optional[Dict[str, Any]] = None +1087 record_version: Optional[Union[Record, RecordDraft]] = None +1088 concept: Optional[str] = None +1089 id_info: Optional[IdInfo] = None +1090 +1091 id_map: Dict[str, IdInfo] = {} +1092 version_infos: List[VersionInfo] = [] +1093 for record_version in versions[::-1]: # process oldest to newest +1094 rdf_version_data = record_version.client.load_file(record_version.rdf_path) +1095 if rdf_version_data is None: +1096 logger.error("failed to load {}", record_version.rdf_path) +1097 continue +1098 +1099 id_info = IdInfo( +1100 source=record_version.rdf_url, +1101 sha256=hashlib.sha256(rdf_version_data).hexdigest(), +1102 ) +1103 id_map[record_version.id] = id_info +1104 id_map[record_version.concept_id] = id_info +1105 +1106 if record_version.doi is not None: +1107 id_map[record_version.doi] = id_info +1108 +1109 if record_version.concept_doi is not None: +1110 id_map[record_version.concept_doi] = id_info +1111 +1112 rdf = record_version.get_rdf() +1113 if (version_id := rdf["id"]) is not None and version_id not in id_map: +1114 id_map[version_id] = id_info +1115 +1116 if rdf["id"].startswith("10.5281/zenodo."): +1117 # legacy models +1118 concept_end = rdf["id"].rfind("/") +1119 concept = rdf["id"][:concept_end] +1120 else: +1121 concept = rdf["id"] +1122 +1123 assert concept is not None +1124 id_map[concept] = id_info +1125 +1126 version_infos.append( +1127 VersionInfo( +1128 v=record_version.version, +1129 created=record_version.info.created, +1130 doi=( +1131 None +1132 if isinstance(record_version, RecordDraft) +1133 else record_version.info.doi +1134 ), +1135 ) +1136 ) +1137 compat_reports = record_version.get_all_compatibility_reports() +1138 compat_tests: Dict[str, List[TestSummaryEntry]] = {} +1139 bioimageio_status = "failed" +1140 for r in compat_reports: +1141 if r.status == "not-applicable": +1142 continue +1143 +1144 if r.tool == f"bioimageio.core_{bioimageio.core.__version__}": +1145 bioimageio_status = r.status +1146 +1147 compat_tests.setdefault(r.tool, []).append( +1148 TestSummaryEntry( +1149 error=r.error, +1150 name="compatibility check", +1151 status=r.status, +1152 traceback=None, +1153 warnings=None, +1154 ) +1155 ) +1156 +1157 test_summary = TestSummary( +1158 status=bioimageio_status, tests=compat_tests +1159 ).model_dump(mode="json") +1160 record_version.client.put_yaml( +1161 test_summary, f"{record_version.folder}test_summary.yaml" +1162 ) +1163 +1164 assert rdf is not None +1165 assert record_version is not None +1166 assert concept is not None +1167 assert id_info is not None +1168 +1169 # create an explicit entry only for the latest version +1170 # (all versions are referenced under `versions`) +1171 # upload 'versions.json' summary +1172 if isinstance(record_version, Record): +1173 versions_info = VersionsInfo( +1174 concept_doi=record_version.concept_doi, versions=version_infos[::-1] +1175 ) +1176 record_version.concept.client.put_json( +1177 f"{record_version.concept.folder}versions.json", +1178 versions_info.model_dump(mode="json"), +1179 ) +1180 status = None +1181 elif isinstance(record_version, RecordDraft): +1182 status = record_version.info.status +1183 else: +1184 assert_never(record_version) +1185 +1186 try: +1187 # legacy nickname +1188 nickname = str(rdf["config"]["bioimageio"]["nickname"]) +1189 nickname_icon = str(rdf["config"]["bioimageio"]["nickname_icon"]) +1190 except KeyError: +1191 # id is nickname +1192 nickname = None +1193 nickname_icon = rdf.get("id_emoji") +1194 +1195 if nickname == concept: +1196 nickname = None +1197 +1198 if nickname is not None: +1199 id_map[nickname] = id_info +1200 +1201 legacy_download_count = LEGACY_DOWNLOAD_COUNTS.get(nickname or concept, 0) +1202 +1203 # TODO: read new download count +1204 download_count = "?" if legacy_download_count == 0 else legacy_download_count 1205 -1206 if nickname == concept: -1207 nickname = None -1208 -1209 if nickname is not None: -1210 id_map[nickname] = id_info -1211 -1212 legacy_download_count = LEGACY_DOWNLOAD_COUNTS.get(nickname or concept, 0) +1206 # ingest compatibility reports +1207 links = set(rdf.get("links", [])) +1208 tags = set(rdf.get("tags", [])) +1209 compat_reports = record_version.get_all_compatibility_reports() +1210 +1211 def get_compat_tag(tool: str): +1212 """make a special, derived tag for the automatic compatibility check result 1213 -1214 # TODO: read new download count -1215 download_count = "?" if legacy_download_count == 0 else legacy_download_count -1216 -1217 # ingest compatibility reports -1218 links = set(rdf.get("links", [])) -1219 tags = set(rdf.get("tags", [])) -1220 compat_reports = record_version.get_all_compatibility_reports() +1214 of a tool to avoid overwriting plain manual tags like 'ilastik'. +1215 """ +1216 return f"{tool}-compatible" +1217 +1218 # remove all version unspecific tool tags +1219 for r in compat_reports: +1220 tags.discard(get_compat_tag(r.tool_wo_version)) 1221 -1222 def get_compat_tag(tool: str): -1223 """make a special, derived tag for the automatic compatibility check result -1224 -1225 of a tool to avoid overwriting plain manual tags like 'ilastik'. -1226 """ -1227 return f"{tool}-compatible" -1228 -1229 # remove all version unspecific tool tags -1230 for r in compat_reports: -1231 tags.discard(get_compat_tag(r.tool_wo_version)) -1232 -1233 # update links and tags with compatible tools -1234 for r in compat_reports: -1235 if r.status == "passed": -1236 links.update(r.links) -1237 tags.add(get_compat_tag(r.tool)) # add version unspecific tag -1238 tags.add(get_compat_tag(r.tool_wo_version)) -1239 else: -1240 tags.discard(get_compat_tag(r.tool)) -1241 -1242 try: -1243 thumbnails = rdf["config"]["bioimageio"]["thumbnails"] -1244 except KeyError: -1245 thumbnails: Dict[Any, Any] = {} -1246 else: -1247 if not isinstance(thumbnails, dict): -1248 thumbnails = {} +1222 # update links and tags with compatible tools +1223 for r in compat_reports: +1224 if r.status == "passed": +1225 links.update(r.links) +1226 tags.add(get_compat_tag(r.tool)) # add version unspecific tag +1227 tags.add(get_compat_tag(r.tool_wo_version)) +1228 else: +1229 tags.discard(get_compat_tag(r.tool)) +1230 +1231 try: +1232 thumbnails = rdf["config"]["bioimageio"]["thumbnails"] +1233 except KeyError: +1234 thumbnails: Dict[Any, Any] = {} +1235 else: +1236 if not isinstance(thumbnails, dict): +1237 thumbnails = {} +1238 +1239 # get parsed root +1240 with ValidationContext(perform_io_checks=False): +1241 rdf_url = HttpUrl(record_version.rdf_url) +1242 +1243 root_url = str(rdf_url.parent) +1244 assert root_url == ((root := record_version.get_file_url("").strip("/"))), ( +1245 root_url, +1246 root, +1247 ) +1248 parsed_root = urlsplit(root_url) 1249 -1250 # get parsed root -1251 with ValidationContext(perform_io_checks=False): -1252 rdf_url = HttpUrl(record_version.rdf_url) -1253 -1254 root_url = str(rdf_url.parent) -1255 assert root_url == ((root := record_version.get_file_url("").strip("/"))), ( -1256 root_url, -1257 root, -1258 ) -1259 parsed_root = urlsplit(root_url) -1260 -1261 return [ -1262 CollectionEntry( -1263 authors=rdf.get("authors", []), -1264 badges=resolve_relative_path( -1265 maybe_swap_with_thumbnail(rdf.get("badges", []), thumbnails), -1266 parsed_root, -1267 ), -1268 concept_doi=record_version.concept_doi, -1269 covers=resolve_relative_path( -1270 maybe_swap_with_thumbnail(rdf.get("covers", []), thumbnails), -1271 parsed_root, -1272 ), -1273 created=record_version.info.created, -1274 description=rdf["description"], -1275 download_count=download_count, -1276 download_url=rdf["download_url"] if "download_url" in rdf else None, -1277 icon=resolve_relative_path( -1278 maybe_swap_with_thumbnail(rdf.get("icon"), thumbnails), parsed_root -1279 ), -1280 id=concept, -1281 license=rdf.get("license"), -1282 links=list(links), -1283 name=rdf["name"], -1284 nickname_icon=nickname_icon, -1285 nickname=nickname, -1286 rdf_source=AnyUrl(record_version.rdf_url), -1287 root_url=root_url, -1288 tags=list(tags), -1289 training_data=rdf["training_data"] if "training_data" in rdf else None, -1290 type=rdf["type"], -1291 source=rdf.get("source"), -1292 ) -1293 ], id_map +1250 return [ +1251 CollectionEntry( +1252 authors=rdf.get("authors", []), +1253 uploader=rdf.get("uploader", dict(email="bioimageiobot@gmail.com")), +1254 badges=resolve_relative_path( +1255 maybe_swap_with_thumbnail(rdf.get("badges", []), thumbnails), +1256 parsed_root, +1257 ), +1258 concept_doi=record_version.concept_doi, +1259 covers=resolve_relative_path( +1260 maybe_swap_with_thumbnail(rdf.get("covers", []), thumbnails), +1261 parsed_root, +1262 ), +1263 created=record_version.info.created, +1264 description=rdf["description"], +1265 download_count=download_count, +1266 download_url=rdf["download_url"] if "download_url" in rdf else None, +1267 icon=resolve_relative_path( +1268 maybe_swap_with_thumbnail(rdf.get("icon"), thumbnails), parsed_root +1269 ), +1270 id=concept, +1271 license=rdf.get("license"), +1272 links=list(links), +1273 name=rdf["name"], +1274 nickname_icon=nickname_icon, +1275 nickname=nickname, +1276 rdf_source=AnyUrl(record_version.rdf_url), +1277 root_url=root_url, +1278 tags=list(tags), +1279 training_data=rdf["training_data"] if "training_data" in rdf else None, +1280 type=rdf["type"], +1281 source=rdf.get("source"), +1282 status=status, +1283 ) +1284 ], id_map

  • @@ -2826,68 +2802,6 @@

    Inherited Members
    -
    - -
    - - class - Uploader(typing.NamedTuple): - - - -
    - -
    573class Uploader(NamedTuple):
    -574    email: Optional[str]
    -575    name: str
    -
    - - -

    Uploader(email, name)

    -
    - - -
    -
    - - Uploader(email: ForwardRef('Optional[str]'), name: str) - - -
    - - -

    Create new instance of Uploader(email, name)

    -
    - - -
    -
    -
    - email: Optional[str] - - -
    - - -

    Alias for field number 0

    -
    - - -
    -
    -
    - name: str - - -
    - - -

    Alias for field number 1

    -
    - - -
    -
    @@ -2900,112 +2814,101 @@
    Inherited Members
    -
    578@dataclass
    -579class RecordBase(RemoteBase, ABC):
    -580    """Base class for a `RecordDraft` and `Record`"""
    -581
    -582    concept_id: str
    -583    concept: RecordConcept = field(init=False)
    +            
    573@dataclass
    +574class RecordBase(RemoteBase, ABC):
    +575    """Base class for a `RecordDraft` and `Record`"""
    +576
    +577    concept_id: str
    +578    concept: RecordConcept = field(init=False)
    +579
    +580    def __post_init__(self):
    +581        self.concept_id = self.concept_id.strip("/")
    +582        assert self.concept_id, "missing concept_id"
    +583        self.concept = RecordConcept(client=self.client, concept_id=self.concept_id)
     584
    -585    def __post_init__(self):
    -586        self.concept_id = self.concept_id.strip("/")
    -587        assert self.concept_id, "missing concept_id"
    -588        self.concept = RecordConcept(client=self.client, concept_id=self.concept_id)
    -589
    -590    @property
    -591    def collection(self):
    -592        return self.concept.collection
    -593
    -594    def exists(self):
    -595        return bool(list(self.client.ls(self.rdf_path, only_files=True)))
    -596
    -597    @property
    -598    def rdf_path(self) -> str:
    -599        return f"{self.folder}files/rdf.yaml"  # TODO: transition to bioimageio.yaml eventually
    -600
    -601    def get_rdf(self) -> Dict[str, Any]:
    -602        rdf_data = self.client.load_file(self.rdf_path)
    -603        if rdf_data is None:
    -604            return {}
    -605        else:
    -606            return yaml.load(rdf_data.decode())
    +585    @property
    +586    def collection(self):
    +587        return self.concept.collection
    +588
    +589    def exists(self):
    +590        return bool(list(self.client.ls(self.rdf_path, only_files=True)))
    +591
    +592    @property
    +593    def rdf_path(self) -> str:
    +594        return f"{self.folder}files/rdf.yaml"  # TODO: transition to bioimageio.yaml eventually
    +595
    +596    def get_rdf(self) -> Dict[str, Any]:
    +597        rdf_data = self.client.load_file(self.rdf_path)
    +598        if rdf_data is None:
    +599            return {}
    +600        else:
    +601            return yaml.load(rdf_data.decode())
    +602
    +603    @property
    +604    def rdf_url(self) -> str:
    +605        """rdf.yaml download URL"""
    +606        return self.client.get_file_url(self.rdf_path)
     607
     608    @property
    -609    def rdf_url(self) -> str:
    -610        """rdf.yaml download URL"""
    -611        return self.client.get_file_url(self.rdf_path)
    -612
    -613    @property
    -614    def chat(self) -> Chat:
    -615        return self._get_json(Chat)
    -616
    -617    def add_log_entry(self, log_entry: LogEntry):
    -618        """add a log entry"""
    -619        self.extend_log(Log(entries=[log_entry]))
    -620
    -621    def extend_log(
    -622        self,
    -623        extension: Log,
    -624    ):
    -625        """extend log file"""
    -626        self._update_json(extension)
    -627
    -628    def extend_chat(
    -629        self,
    -630        extension: Chat,
    -631    ):
    -632        """extend chat file"""
    -633        self._update_json(extension)
    -634
    -635    def get_uploader(self):
    -636        rdf = self.get_rdf()
    -637        try:
    -638            uploader = rdf["uploader"]
    -639            email = uploader["email"]
    -640            name = uploader.get(
    -641                "name", f"{rdf.get('type', 'bioimage.io resource')} contributor"
    -642            )
    -643        except Exception as e:
    -644            logger.error("failed to extract uploader from rdf: {}", e)
    -645            email = None
    -646            name = "bioimage.io resource contributor"
    -647
    -648        return Uploader(email=email, name=name)
    -649
    -650    def get_file_url(self, path: str):
    -651        return self.client.get_file_url(f"{self.folder}files/{path}")
    -652
    -653    def get_file_urls(self):
    -654        return self.client.get_file_urls(f"{self.folder}files/")
    -655
    -656    def get_file_paths(self):
    -657        return [
    -658            f"{self.folder}files/{p}" for p in self.client.ls(f"{self.folder}files/")
    -659        ]
    -660
    -661    def get_all_compatibility_reports(self, tool: Optional[str] = None):
    -662        """get all compatibility reports"""
    -663        tools = [
    -664            d[:-5]
    -665            for d in self.client.ls(f"{self.folder}compatibility/", only_files=True)
    -666            if d.endswith(".json") and (tool is None or d[:-5] == tool)
    -667        ]
    -668        reports_data = {
    -669            t: self.client.load_file(self.get_compatibility_report_path(t))
    -670            for t in tools
    -671        }
    -672        return [
    -673            CompatibilityReport.model_validate({**json.loads(d), "tool": t})
    -674            for t, d in reports_data.items()
    -675            if d is not None
    -676        ]
    -677
    -678    def get_compatibility_report_path(self, tool: str):
    -679        return f"{self.folder}compatibility/{tool}.json"
    -680
    -681    def set_compatibility_report(self, report: CompatibilityReport) -> None:
    -682        path = self.get_compatibility_report_path(report.tool)
    -683        self.client.put_and_cache(path, report.model_dump_json().encode())
    +609    def chat(self) -> Chat:
    +610        return self._get_json(Chat)
    +611
    +612    def add_log_entry(self, log_entry: LogEntry):
    +613        """add a log entry"""
    +614        self.extend_log(Log(entries=[log_entry]))
    +615
    +616    def extend_log(
    +617        self,
    +618        extension: Log,
    +619    ):
    +620        """extend log file"""
    +621        self._update_json(extension)
    +622
    +623    def extend_chat(
    +624        self,
    +625        extension: Chat,
    +626    ):
    +627        """extend chat file"""
    +628        self._update_json(extension)
    +629
    +630    def get_uploader(self):
    +631        rdf = self.get_rdf()
    +632        return Uploader.model_validate(rdf["uploader"])
    +633
    +634    def get_file_url(self, path: str):
    +635        return self.client.get_file_url(f"{self.folder}files/{path}")
    +636
    +637    def get_file_urls(self):
    +638        return self.client.get_file_urls(f"{self.folder}files/")
    +639
    +640    def get_file_paths(self):
    +641        return [
    +642            f"{self.folder}files/{p}" for p in self.client.ls(f"{self.folder}files/")
    +643        ]
    +644
    +645    def get_all_compatibility_reports(self, tool: Optional[str] = None):
    +646        """get all compatibility reports"""
    +647        tools = [
    +648            d[:-5]
    +649            for d in self.client.ls(f"{self.folder}compatibility/", only_files=True)
    +650            if d.endswith(".json") and (tool is None or d[:-5] == tool)
    +651        ]
    +652        reports_data = {
    +653            t: self.client.load_file(self.get_compatibility_report_path(t))
    +654            for t in tools
    +655        }
    +656        return [
    +657            CompatibilityReport.model_validate({**json.loads(d), "tool": t})
    +658            for t, d in reports_data.items()
    +659            if d is not None
    +660        ]
    +661
    +662    def get_compatibility_report_path(self, tool: str):
    +663        return f"{self.folder}compatibility/{tool}.json"
    +664
    +665    def set_compatibility_report(self, report: CompatibilityReport) -> None:
    +666        path = self.get_compatibility_report_path(report.tool)
    +667        self.client.put_and_cache(path, report.model_dump_json().encode())
     
    @@ -3056,9 +2959,9 @@
    Inherited Members
    -
    590    @property
    -591    def collection(self):
    -592        return self.concept.collection
    +            
    585    @property
    +586    def collection(self):
    +587        return self.concept.collection
     
    @@ -3076,8 +2979,8 @@
    Inherited Members
    -
    594    def exists(self):
    -595        return bool(list(self.client.ls(self.rdf_path, only_files=True)))
    +            
    589    def exists(self):
    +590        return bool(list(self.client.ls(self.rdf_path, only_files=True)))
     
    @@ -3093,9 +2996,9 @@
    Inherited Members
    -
    597    @property
    -598    def rdf_path(self) -> str:
    -599        return f"{self.folder}files/rdf.yaml"  # TODO: transition to bioimageio.yaml eventually
    +            
    592    @property
    +593    def rdf_path(self) -> str:
    +594        return f"{self.folder}files/rdf.yaml"  # TODO: transition to bioimageio.yaml eventually
     
    @@ -3113,12 +3016,12 @@
    Inherited Members
    -
    601    def get_rdf(self) -> Dict[str, Any]:
    -602        rdf_data = self.client.load_file(self.rdf_path)
    -603        if rdf_data is None:
    -604            return {}
    -605        else:
    -606            return yaml.load(rdf_data.decode())
    +            
    596    def get_rdf(self) -> Dict[str, Any]:
    +597        rdf_data = self.client.load_file(self.rdf_path)
    +598        if rdf_data is None:
    +599            return {}
    +600        else:
    +601            return yaml.load(rdf_data.decode())
     
    @@ -3134,10 +3037,10 @@
    Inherited Members
    -
    608    @property
    -609    def rdf_url(self) -> str:
    -610        """rdf.yaml download URL"""
    -611        return self.client.get_file_url(self.rdf_path)
    +            
    603    @property
    +604    def rdf_url(self) -> str:
    +605        """rdf.yaml download URL"""
    +606        return self.client.get_file_url(self.rdf_path)
     
    @@ -3155,9 +3058,9 @@
    Inherited Members
    -
    613    @property
    -614    def chat(self) -> Chat:
    -615        return self._get_json(Chat)
    +            
    608    @property
    +609    def chat(self) -> Chat:
    +610        return self._get_json(Chat)
     
    @@ -3175,9 +3078,9 @@
    Inherited Members
    -
    617    def add_log_entry(self, log_entry: LogEntry):
    -618        """add a log entry"""
    -619        self.extend_log(Log(entries=[log_entry]))
    +            
    612    def add_log_entry(self, log_entry: LogEntry):
    +613        """add a log entry"""
    +614        self.extend_log(Log(entries=[log_entry]))
     
    @@ -3197,12 +3100,12 @@
    Inherited Members
    -
    621    def extend_log(
    -622        self,
    -623        extension: Log,
    -624    ):
    -625        """extend log file"""
    -626        self._update_json(extension)
    +            
    616    def extend_log(
    +617        self,
    +618        extension: Log,
    +619    ):
    +620        """extend log file"""
    +621        self._update_json(extension)
     
    @@ -3222,12 +3125,12 @@
    Inherited Members
    -
    628    def extend_chat(
    -629        self,
    -630        extension: Chat,
    -631    ):
    -632        """extend chat file"""
    -633        self._update_json(extension)
    +            
    623    def extend_chat(
    +624        self,
    +625        extension: Chat,
    +626    ):
    +627        """extend chat file"""
    +628        self._update_json(extension)
     
    @@ -3247,20 +3150,9 @@
    Inherited Members
    -
    635    def get_uploader(self):
    -636        rdf = self.get_rdf()
    -637        try:
    -638            uploader = rdf["uploader"]
    -639            email = uploader["email"]
    -640            name = uploader.get(
    -641                "name", f"{rdf.get('type', 'bioimage.io resource')} contributor"
    -642            )
    -643        except Exception as e:
    -644            logger.error("failed to extract uploader from rdf: {}", e)
    -645            email = None
    -646            name = "bioimage.io resource contributor"
    -647
    -648        return Uploader(email=email, name=name)
    +            
    630    def get_uploader(self):
    +631        rdf = self.get_rdf()
    +632        return Uploader.model_validate(rdf["uploader"])
     
    @@ -3278,8 +3170,8 @@
    Inherited Members
    -
    650    def get_file_url(self, path: str):
    -651        return self.client.get_file_url(f"{self.folder}files/{path}")
    +            
    634    def get_file_url(self, path: str):
    +635        return self.client.get_file_url(f"{self.folder}files/{path}")
     
    @@ -3297,8 +3189,8 @@
    Inherited Members
    -
    653    def get_file_urls(self):
    -654        return self.client.get_file_urls(f"{self.folder}files/")
    +            
    637    def get_file_urls(self):
    +638        return self.client.get_file_urls(f"{self.folder}files/")
     
    @@ -3316,10 +3208,10 @@
    Inherited Members
    -
    656    def get_file_paths(self):
    -657        return [
    -658            f"{self.folder}files/{p}" for p in self.client.ls(f"{self.folder}files/")
    -659        ]
    +            
    640    def get_file_paths(self):
    +641        return [
    +642            f"{self.folder}files/{p}" for p in self.client.ls(f"{self.folder}files/")
    +643        ]
     
    @@ -3337,22 +3229,22 @@
    Inherited Members
    -
    661    def get_all_compatibility_reports(self, tool: Optional[str] = None):
    -662        """get all compatibility reports"""
    -663        tools = [
    -664            d[:-5]
    -665            for d in self.client.ls(f"{self.folder}compatibility/", only_files=True)
    -666            if d.endswith(".json") and (tool is None or d[:-5] == tool)
    -667        ]
    -668        reports_data = {
    -669            t: self.client.load_file(self.get_compatibility_report_path(t))
    -670            for t in tools
    -671        }
    -672        return [
    -673            CompatibilityReport.model_validate({**json.loads(d), "tool": t})
    -674            for t, d in reports_data.items()
    -675            if d is not None
    -676        ]
    +            
    645    def get_all_compatibility_reports(self, tool: Optional[str] = None):
    +646        """get all compatibility reports"""
    +647        tools = [
    +648            d[:-5]
    +649            for d in self.client.ls(f"{self.folder}compatibility/", only_files=True)
    +650            if d.endswith(".json") and (tool is None or d[:-5] == tool)
    +651        ]
    +652        reports_data = {
    +653            t: self.client.load_file(self.get_compatibility_report_path(t))
    +654            for t in tools
    +655        }
    +656        return [
    +657            CompatibilityReport.model_validate({**json.loads(d), "tool": t})
    +658            for t, d in reports_data.items()
    +659            if d is not None
    +660        ]
     
    @@ -3372,8 +3264,8 @@
    Inherited Members
    -
    678    def get_compatibility_report_path(self, tool: str):
    -679        return f"{self.folder}compatibility/{tool}.json"
    +            
    662    def get_compatibility_report_path(self, tool: str):
    +663        return f"{self.folder}compatibility/{tool}.json"
     
    @@ -3391,9 +3283,9 @@
    Inherited Members
    -
    681    def set_compatibility_report(self, report: CompatibilityReport) -> None:
    -682        path = self.get_compatibility_report_path(report.tool)
    -683        self.client.put_and_cache(path, report.model_dump_json().encode())
    +            
    665    def set_compatibility_report(self, report: CompatibilityReport) -> None:
    +666        path = self.get_compatibility_report_path(report.tool)
    +667        self.client.put_and_cache(path, report.model_dump_json().encode())
     
    @@ -3427,292 +3319,292 @@
    Inherited Members
    -
    686@dataclass
    -687class RecordDraft(RecordBase):
    -688    """A staged resource version"""
    -689
    -690    version: ClassVar[str] = "draft"
    -691    doi: ClassVar[None] = None
    -692
    -693    @property
    -694    def folder(self) -> str:
    -695        """The S3 (sub)prefix of this version
    -696        (**sub**)prefix, because the client may prefix this prefix"""
    -697        return f"{self.id}/"
    -698
    -699    @property
    -700    def id(self) -> str:
    -701        return f"{self.concept_id}/draft"
    +            
    670@dataclass
    +671class RecordDraft(RecordBase):
    +672    """A staged resource version"""
    +673
    +674    version: ClassVar[str] = "draft"
    +675    doi: ClassVar[None] = None
    +676
    +677    @property
    +678    def folder(self) -> str:
    +679        """The S3 (sub)prefix of this version
    +680        (**sub**)prefix, because the client may prefix this prefix"""
    +681        return f"{self.id}/"
    +682
    +683    @property
    +684    def id(self) -> str:
    +685        return f"{self.concept_id}/draft"
    +686
    +687    @property
    +688    def info(self) -> DraftInfo:
    +689        return self._get_json(DraftInfo)
    +690
    +691    def update_info(self, update: DraftInfo):
    +692        self._update_json(update)
    +693
    +694    @property
    +695    def bioimageio_url(self):
    +696        return f"https://bioimage.io/#/?repo={self.collection.client.get_file_url('collection_draft.json')}&id={self.concept_id}"
    +697
    +698    @property
    +699    def concept_doi(self):
    +700        """concept DOI of Zenodo record"""
    +701        return self.concept.doi
     702
    -703    @property
    -704    def info(self) -> DraftInfo:
    -705        return self._get_json(DraftInfo)
    -706
    -707    def update_info(self, update: DraftInfo):
    -708        self._update_json(update)
    -709
    -710    @property
    -711    def bioimageio_url(self):
    -712        return f"https://bioimage.io/#/?repo={self.collection.client.get_file_url('collection_draft.json')}&id={self.concept_id}"
    -713
    -714    @property
    -715    def concept_doi(self):
    -716        """concept DOI of Zenodo record"""
    -717        return self.concept.doi
    -718
    -719    @log
    -720    @lock_concept
    -721    def unpack(self, package_url: str):
    -722        previous_versions = self.concept.get_published_versions()
    -723        if not previous_versions:
    -724            previous_rdf = None
    -725        else:
    -726            previous_rdf = previous_versions[0].get_rdf()
    +703    @log
    +704    @lock_concept
    +705    def unpack(self, package_url: str):
    +706        previous_versions = self.concept.get_published_versions()
    +707        if not previous_versions:
    +708            previous_rdf = None
    +709        else:
    +710            previous_rdf = previous_versions[0].get_rdf()
    +711
    +712        # ensure we have a chat.json
    +713        self.extend_chat(Chat())
    +714
    +715        self.add_log_entry(
    +716            LogEntry(
    +717                message="new status: unpacking",
    +718                details={"package_url": package_url},
    +719            )
    +720        )
    +721
    +722        # Download the model zip file
    +723        try:
    +724            remotezip = urllib.request.urlopen(package_url)
    +725        except Exception as e:
    +726            raise RuntimeError(f"failed to open {package_url}: {e}")
     727
    -728        # ensure we have a chat.json
    -729        self.extend_chat(Chat())
    -730
    -731        self.add_log_entry(
    -732            LogEntry(
    -733                message="new status: unpacking",
    -734                details={"package_url": package_url},
    -735            )
    -736        )
    -737
    -738        # Download the model zip file
    -739        try:
    -740            remotezip = urllib.request.urlopen(package_url)
    -741        except Exception as e:
    -742            raise RuntimeError(f"failed to open {package_url}: {e}")
    +728        zipinmemory = io.BytesIO(remotezip.read())
    +729
    +730        # Unzip the zip file
    +731        zipobj = zipfile.ZipFile(zipinmemory)
    +732
    +733        file_names = set(zipobj.namelist())
    +734        bioimageio_yaml_file_name = identify_bioimageio_yaml_file_name(file_names)
    +735
    +736        rdf: Dict[Any, Any] = yaml.load(
    +737            zipobj.open(bioimageio_yaml_file_name).read().decode()
    +738        )
    +739        if not isinstance(rdf, dict):
    +740            raise ValueError(
    +741                f"Expected {bioimageio_yaml_file_name} to hold a dictionary"
    +742            )
     743
    -744        zipinmemory = io.BytesIO(remotezip.read())
    -745
    -746        # Unzip the zip file
    -747        zipobj = zipfile.ZipFile(zipinmemory)
    -748
    -749        file_names = set(zipobj.namelist())
    -750        bioimageio_yaml_file_name = identify_bioimageio_yaml_file_name(file_names)
    +744        if (rdf_id := rdf.get("id")) is None:
    +745            rdf["id"] = self.concept_id
    +746        elif rdf_id != self.concept_id:
    +747            raise ValueError(
    +748                f"Expected package for {self.concept_id}, "
    +749                + f"but found id {rdf_id} in {package_url}"
    +750            )
     751
    -752        rdf: Dict[Any, Any] = yaml.load(
    -753            zipobj.open(bioimageio_yaml_file_name).read().decode()
    -754        )
    -755        if not isinstance(rdf, dict):
    -756            raise ValueError(
    -757                f"Expected {bioimageio_yaml_file_name} to hold a dictionary"
    -758            )
    -759
    -760        if (rdf_id := rdf.get("id")) is None:
    -761            rdf["id"] = self.concept_id
    -762        elif rdf_id != self.concept_id:
    -763            raise ValueError(
    -764                f"Expected package for {self.concept_id}, "
    -765                + f"but found id {rdf_id} in {package_url}"
    -766            )
    -767
    -768        if "name" not in rdf:
    -769            raise ValueError(f"Missing 'name' in {package_url}")
    -770
    -771        self._set_status(
    -772            UnpackingStatus(description=f"unzipping {package_url} to {self.folder}")
    -773        )
    -774
    -775        collection_data = self.client.load_file("collection.json")
    -776        assert collection_data is not None
    -777        collection = json.loads(collection_data)
    -778        for e in collection["collection"]:
    -779            if e["name"] == rdf["name"]:
    -780                if e["id"] != rdf["id"]:
    -781                    self.add_log_entry(
    -782                        LogEntry(
    -783                            message=f"error: Another resource with name='{rdf['name']}' already exists ({e['id']})"
    -784                        )
    -785                    )
    -786                break
    -787
    -788        # set matching id_emoji
    -789        rdf["id_emoji"] = self.collection.config.id_parts.get_icon(self.concept_id)
    -790        if rdf["id_emoji"] is None:
    -791            self.add_log_entry(
    -792                LogEntry(message=f"error: Failed to get icon for {self.concept_id}")
    -793            )
    -794
    -795        if "id" not in rdf:
    -796            raise ValueError("Missing `id` field")
    +752        if "name" not in rdf:
    +753            raise ValueError(f"Missing 'name' in {package_url}")
    +754
    +755        self._set_status(
    +756            UnpackingStatus(description=f"unzipping {package_url} to {self.folder}")
    +757        )
    +758
    +759        collection_data = self.client.load_file("collection.json")
    +760        assert collection_data is not None
    +761        collection = json.loads(collection_data)
    +762        for e in collection["collection"]:
    +763            if e["name"] == rdf["name"]:
    +764                if e["id"] != rdf["id"]:
    +765                    self.add_log_entry(
    +766                        LogEntry(
    +767                            message=f"error: Another resource with name='{rdf['name']}' already exists ({e['id']})"
    +768                        )
    +769                    )
    +770                break
    +771
    +772        # set matching id_emoji
    +773        rdf["id_emoji"] = self.collection.config.id_parts.get_icon(self.concept_id)
    +774        if rdf["id_emoji"] is None:
    +775            self.add_log_entry(
    +776                LogEntry(message=f"error: Failed to get icon for {self.concept_id}")
    +777            )
    +778
    +779        if "id" not in rdf:
    +780            raise ValueError("Missing `id` field")
    +781
    +782        if not str(rdf["id"]):
    +783            raise ValueError(f"Invalid `id`: {rdf['id']}")
    +784
    +785        if "uploader" not in rdf:
    +786            for r in self.collection.config.reviewers:
    +787                if settings.bioimageio_user_id == r.id:
    +788                    rdf["uploader"] = dict(name=r.name, email=r.email)
    +789                    break
    +790            else:
    +791                raise ValueError("RDF is missing `uploader.email` field.")
    +792
    +793        elif not isinstance(rdf["uploader"], dict) or "email" not in rdf["uploader"]:
    +794            raise ValueError("RDF is missing `uploader.email` field.")
    +795        elif not isinstance(rdf["uploader"]["email"], str):
    +796            raise ValueError("RDF has invalid `uploader.email` field.")
     797
    -798        if not str(rdf["id"]):
    -799            raise ValueError(f"Invalid `id`: {rdf['id']}")
    -800
    -801        if "uploader" not in rdf:
    -802            for r in self.collection.config.reviewers:
    -803                if settings.bioimageio_user_id == r.id:
    -804                    rdf["uploader"] = dict(name=r.name, email=r.email)
    -805                    break
    -806            else:
    -807                raise ValueError("RDF is missing `uploader.email` field.")
    -808
    -809        elif not isinstance(rdf["uploader"], dict) or "email" not in rdf["uploader"]:
    -810            raise ValueError("RDF is missing `uploader.email` field.")
    -811        elif not isinstance(rdf["uploader"]["email"], str):
    -812            raise ValueError("RDF has invalid `uploader.email` field.")
    -813
    -814        uploader: Any = rdf["uploader"]["email"]
    -815        if previous_rdf is not None:
    -816            prev_authors: List[Dict[str, str]] = previous_rdf["authors"]
    -817            assert isinstance(prev_authors, list)
    -818            prev_maintainers: List[Dict[str, str]] = (
    -819                previous_rdf.get("maintainers", []) + prev_authors
    -820            )
    -821            maintainer_emails = [a["email"] for a in prev_maintainers if "email" in a]
    -822            if (
    -823                uploader != previous_rdf.get("uploader", {}).get("email", BOT_EMAIL)
    -824                and uploader not in maintainer_emails
    -825                and uploader not in [r.email for r in self.collection.config.reviewers]
    -826            ):
    -827                raise ValueError(
    -828                    f"uploader '{uploader}' is not a maintainer of '{self.id}' nor a registered bioimageio reviewer."
    -829                )
    -830
    -831        # clean up any previous draft files
    -832        self.client.rm_dir(self.folder + "files/")
    +798        uploader: Any = rdf["uploader"]["email"]
    +799        if previous_rdf is not None:
    +800            prev_authors: List[Dict[str, str]] = previous_rdf["authors"]
    +801            assert isinstance(prev_authors, list)
    +802            prev_maintainers: List[Dict[str, str]] = (
    +803                previous_rdf.get("maintainers", []) + prev_authors
    +804            )
    +805            maintainer_emails = [a["email"] for a in prev_maintainers if "email" in a]
    +806            if (
    +807                uploader != previous_rdf.get("uploader", {}).get("email", BOT_EMAIL)
    +808                and uploader not in maintainer_emails
    +809                and uploader not in [r.email for r in self.collection.config.reviewers]
    +810            ):
    +811                raise ValueError(
    +812                    f"uploader '{uploader}' is not a maintainer of '{self.id}' nor a registered bioimageio reviewer."
    +813                )
    +814
    +815        # clean up any previous draft files
    +816        self.client.rm_dir(self.folder + "files/")
    +817
    +818        # upload new draft files
    +819        def upload(file_name: str, file_data: bytes):
    +820            path = f"{self.folder}files/{file_name}"
    +821            self.client.put(path, io.BytesIO(file_data), length=len(file_data))
    +822
    +823        thumbnails = create_thumbnails(rdf, zipobj)
    +824        config = rdf.setdefault("config", {})
    +825        if isinstance(config, dict):
    +826            bioimageio_config: Any = config.setdefault("bioimageio", {})
    +827            if isinstance(bioimageio_config, dict):
    +828                thumbnail_config: Any = bioimageio_config.setdefault("thumbnails", {})
    +829                if isinstance(thumbnail_config, dict):
    +830                    for oname, (tname, tdata) in thumbnails.items():
    +831                        upload(tname, tdata)
    +832                        thumbnail_config[oname] = tname
     833
    -834        # upload new draft files
    -835        def upload(file_name: str, file_data: bytes):
    -836            path = f"{self.folder}files/{file_name}"
    -837            self.client.put(path, io.BytesIO(file_data), length=len(file_data))
    -838
    -839        thumbnails = create_thumbnails(rdf, zipobj)
    -840        config = rdf.setdefault("config", {})
    -841        if isinstance(config, dict):
    -842            bioimageio_config: Any = config.setdefault("bioimageio", {})
    -843            if isinstance(bioimageio_config, dict):
    -844                thumbnail_config: Any = bioimageio_config.setdefault("thumbnails", {})
    -845                if isinstance(thumbnail_config, dict):
    -846                    for oname, (tname, tdata) in thumbnails.items():
    -847                        upload(tname, tdata)
    -848                        thumbnail_config[oname] = tname
    -849
    -850                if rdf["id_emoji"] is not None:
    -851                    # we have a valid new collection id
    -852                    # remove any nickname from config.bioimageio
    -853                    #   that may have been kept if reusing an older model
    -854                    bioimageio_config.pop("nickname", None)
    -855                    bioimageio_config.pop("nickname_icon", None)
    +834                if rdf["id_emoji"] is not None:
    +835                    # we have a valid new collection id
    +836                    # remove any nickname from config.bioimageio
    +837                    #   that may have been kept if reusing an older model
    +838                    bioimageio_config.pop("nickname", None)
    +839                    bioimageio_config.pop("nickname_icon", None)
    +840
    +841        rdf_io = io.BytesIO()
    +842        yaml.dump(rdf, rdf_io)
    +843        rdf_data = rdf_io.getvalue()
    +844        upload("rdf.yaml", rdf_data)
    +845
    +846        file_names.remove(bioimageio_yaml_file_name)
    +847        for other in {fn for fn in file_names if is_valid_bioimageio_yaml_name(fn)}:
    +848            logger.warning("ignoring alternative rdf.yaml source '{other}'")
    +849            file_names.remove(other)
    +850
    +851        for file_name in file_names:
    +852            file_data = zipobj.open(file_name).read()
    +853            upload(file_name, file_data)
    +854
    +855        self._set_status(UnpackedStatus())
     856
    -857        rdf_io = io.BytesIO()
    -858        yaml.dump(rdf, rdf_io)
    -859        rdf_data = rdf_io.getvalue()
    -860        upload("rdf.yaml", rdf_data)
    -861
    -862        file_names.remove(bioimageio_yaml_file_name)
    -863        for other in {fn for fn in file_names if is_valid_bioimageio_yaml_name(fn)}:
    -864            logger.warning("ignoring alternative rdf.yaml source '{other}'")
    -865            file_names.remove(other)
    -866
    -867        for file_name in file_names:
    -868            file_data = zipobj.open(file_name).read()
    -869            upload(file_name, file_data)
    -870
    -871        self._set_status(UnpackedStatus())
    -872
    -873    def set_testing_status(self, description: str):
    -874        self._set_status(TestingStatus(description=description))
    -875
    -876    def await_review(self):
    -877        """set status to 'awaiting review'"""
    -878        self._set_status(AwaitingReviewStatus())
    -879
    -880    @reviewer_role
    -881    def request_changes(self, reviewer: str, reason: str):
    -882        # map reviewer id to name
    -883        for r in self.collection.config.reviewers:
    -884            if reviewer == r.id:
    -885                reviewer = r.name
    -886                break
    -887
    -888        self._set_status(ChangesRequestedStatus(description=reason))
    -889        self.extend_chat(
    -890            Chat(
    -891                messages=[
    -892                    Message(
    -893                        author="system", text=f"{reviewer} requested changes: {reason}"
    -894                    )
    -895                ]
    -896            )
    -897        )
    -898
    -899    @log
    -900    @reviewer_role
    -901    @lock_concept
    -902    def publish(self, reviewer: str) -> Record:
    -903        """mark this staged version candidate as accepted and try to publish it"""
    -904        # map reviewer id to name
    -905        for r in self.collection.config.reviewers:
    -906            if reviewer == r.id:
    -907                reviewer = r.name
    -908                break
    -909
    -910        self._set_status(AcceptedStatus())
    -911        self.extend_chat(
    -912            Chat(
    -913                messages=[
    -914                    Message(
    -915                        author="system",
    -916                        text=f"{reviewer} accepted {self.id} {self.version}",
    -917                    )
    -918                ]
    -919            )
    -920        )
    +857    def set_testing_status(self, description: str):
    +858        self._set_status(TestingStatus(description=description))
    +859
    +860    def await_review(self):
    +861        """set status to 'awaiting review'"""
    +862        self._set_status(AwaitingReviewStatus())
    +863
    +864    @reviewer_role
    +865    def request_changes(self, reviewer: str, reason: str):
    +866        # map reviewer id to name
    +867        for r in self.collection.config.reviewers:
    +868            if reviewer == r.id:
    +869                reviewer = r.name
    +870                break
    +871
    +872        self._set_status(ChangesRequestedStatus(description=reason))
    +873        self.extend_chat(
    +874            Chat(
    +875                messages=[
    +876                    Message(
    +877                        author="system", text=f"{reviewer} requested changes: {reason}"
    +878                    )
    +879                ]
    +880            )
    +881        )
    +882
    +883    @log
    +884    @reviewer_role
    +885    @lock_concept
    +886    def publish(self, reviewer: str) -> Record:
    +887        """mark this staged version candidate as accepted and try to publish it"""
    +888        # map reviewer id to name
    +889        for r in self.collection.config.reviewers:
    +890            if reviewer == r.id:
    +891                reviewer = r.name
    +892                break
    +893
    +894        self._set_status(AcceptedStatus())
    +895        self.extend_chat(
    +896            Chat(
    +897                messages=[
    +898                    Message(
    +899                        author="system",
    +900                        text=f"{reviewer} accepted {self.id} {self.version}",
    +901                    )
    +902                ]
    +903            )
    +904        )
    +905
    +906        logger.debug("Publishing {}", self.folder)
    +907
    +908        rdf_data = self.client.load_file(self.rdf_path)
    +909        if rdf_data is None:
    +910            raise RuntimeError(f"Failed to load staged RDF from {self.rdf_path}")
    +911
    +912        rdf: Dict[Any, Any] = yaml.load(rdf_data.decode())
    +913        assert isinstance(rdf, dict)
    +914        version = rdf.get("version", "1")
    +915        if not isinstance(version, (int, float, str)):
    +916            raise ValueError(f"Invalid `version`: '{version}'")
    +917        else:
    +918            version = str(version)
    +919            if version in {v.version for v in self.concept.get_published_versions()}:
    +920                raise ValueError(f"Trying to publish version '{version}' again!")
     921
    -922        logger.debug("Publishing {}", self.folder)
    -923
    -924        rdf_data = self.client.load_file(self.rdf_path)
    -925        if rdf_data is None:
    -926            raise RuntimeError(f"Failed to load staged RDF from {self.rdf_path}")
    +922        # remember previously published concept doi
    +923        if previous_versions := self.concept.get_published_versions():
    +924            concept_doi = previous_versions[0].info.concept_doi
    +925        else:
    +926            concept_doi = None
     927
    -928        rdf: Dict[Any, Any] = yaml.load(rdf_data.decode())
    -929        assert isinstance(rdf, dict)
    -930        version = rdf.get("version", "1")
    -931        if not isinstance(version, (int, float, str)):
    -932            raise ValueError(f"Invalid `version`: '{version}'")
    -933        else:
    -934            version = str(version)
    -935            if version in {v.version for v in self.concept.get_published_versions()}:
    -936                raise ValueError(f"Trying to publish version '{version}' again!")
    -937
    -938        # remember previously published concept doi
    -939        if previous_versions := self.concept.get_published_versions():
    -940            concept_doi = previous_versions[0].info.concept_doi
    -941        else:
    -942            concept_doi = None
    -943
    -944        published = Record(
    -945            client=self.client, concept_id=self.concept_id, version=version
    -946        )
    -947
    -948        # move all files
    -949        self.client.cp_dir(self.folder, published.folder)
    -950
    -951        # overwrite rdf.yaml with updated version_number
    -952        stream = io.StringIO()
    -953        yaml.dump(rdf, stream)
    -954        rdf_data = stream.getvalue().encode()
    -955        self.client.put(self.rdf_path, io.BytesIO(rdf_data), length=len(rdf_data))
    -956        self.client.rm_dir(self.folder)
    -957
    -958        published.update_info(RecordInfo(concept_doi=concept_doi))
    -959        return published
    -960
    -961    def _set_status(self, value: DraftStatus):
    -962        current_status = self.info.status
    -963        self.add_log_entry(
    -964            LogEntry(message=f"new status: {value.description}", details=value)
    -965        )
    -966        if value.name == "testing" or current_status is None:
    -967            pass
    -968        elif value.step < current_status.step:
    -969            logger.warning("Proceeding from {} to {}", current_status, value)
    -970
    -971        self._update_json(DraftInfo(status=value))
    +928        published = Record(
    +929            client=self.client, concept_id=self.concept_id, version=version
    +930        )
    +931
    +932        # move all files
    +933        self.client.cp_dir(self.folder, published.folder)
    +934
    +935        # overwrite rdf.yaml with updated version_number
    +936        stream = io.StringIO()
    +937        yaml.dump(rdf, stream)
    +938        rdf_data = stream.getvalue().encode()
    +939        self.client.put(self.rdf_path, io.BytesIO(rdf_data), length=len(rdf_data))
    +940        self.client.rm_dir(self.folder)
    +941
    +942        published.update_info(RecordInfo(concept_doi=concept_doi))
    +943        return published
    +944
    +945    def _set_status(self, value: DraftStatus):
    +946        current_status = self.info.status
    +947        self.add_log_entry(
    +948            LogEntry(message=f"new status: {value.description}", details=value)
    +949        )
    +950        if value.name == "testing" or current_status is None:
    +951            pass
    +952        elif value.step < current_status.step:
    +953            logger.warning("Proceeding from {} to {}", current_status, value)
    +954
    +955        self._update_json(DraftInfo(status=value))
     
    @@ -3765,11 +3657,11 @@
    Inherited Members
    -
    693    @property
    -694    def folder(self) -> str:
    -695        """The S3 (sub)prefix of this version
    -696        (**sub**)prefix, because the client may prefix this prefix"""
    -697        return f"{self.id}/"
    +            
    677    @property
    +678    def folder(self) -> str:
    +679        """The S3 (sub)prefix of this version
    +680        (**sub**)prefix, because the client may prefix this prefix"""
    +681        return f"{self.id}/"
     
    @@ -3788,9 +3680,9 @@
    Inherited Members
    -
    699    @property
    -700    def id(self) -> str:
    -701        return f"{self.concept_id}/draft"
    +            
    683    @property
    +684    def id(self) -> str:
    +685        return f"{self.concept_id}/draft"
     
    @@ -3806,9 +3698,9 @@
    Inherited Members
    -
    703    @property
    -704    def info(self) -> DraftInfo:
    -705        return self._get_json(DraftInfo)
    +            
    687    @property
    +688    def info(self) -> DraftInfo:
    +689        return self._get_json(DraftInfo)
     
    @@ -3826,8 +3718,8 @@
    Inherited Members
    -
    707    def update_info(self, update: DraftInfo):
    -708        self._update_json(update)
    +            
    691    def update_info(self, update: DraftInfo):
    +692        self._update_json(update)
     
    @@ -3843,9 +3735,9 @@
    Inherited Members
    -
    710    @property
    -711    def bioimageio_url(self):
    -712        return f"https://bioimage.io/#/?repo={self.collection.client.get_file_url('collection_draft.json')}&id={self.concept_id}"
    +            
    694    @property
    +695    def bioimageio_url(self):
    +696        return f"https://bioimage.io/#/?repo={self.collection.client.get_file_url('collection_draft.json')}&id={self.concept_id}"
     
    @@ -3861,10 +3753,10 @@
    Inherited Members
    -
    714    @property
    -715    def concept_doi(self):
    -716        """concept DOI of Zenodo record"""
    -717        return self.concept.doi
    +            
    698    @property
    +699    def concept_doi(self):
    +700        """concept DOI of Zenodo record"""
    +701        return self.concept.doi
     
    @@ -3886,159 +3778,159 @@
    Inherited Members
    -
    719    @log
    -720    @lock_concept
    -721    def unpack(self, package_url: str):
    -722        previous_versions = self.concept.get_published_versions()
    -723        if not previous_versions:
    -724            previous_rdf = None
    -725        else:
    -726            previous_rdf = previous_versions[0].get_rdf()
    +            
    703    @log
    +704    @lock_concept
    +705    def unpack(self, package_url: str):
    +706        previous_versions = self.concept.get_published_versions()
    +707        if not previous_versions:
    +708            previous_rdf = None
    +709        else:
    +710            previous_rdf = previous_versions[0].get_rdf()
    +711
    +712        # ensure we have a chat.json
    +713        self.extend_chat(Chat())
    +714
    +715        self.add_log_entry(
    +716            LogEntry(
    +717                message="new status: unpacking",
    +718                details={"package_url": package_url},
    +719            )
    +720        )
    +721
    +722        # Download the model zip file
    +723        try:
    +724            remotezip = urllib.request.urlopen(package_url)
    +725        except Exception as e:
    +726            raise RuntimeError(f"failed to open {package_url}: {e}")
     727
    -728        # ensure we have a chat.json
    -729        self.extend_chat(Chat())
    -730
    -731        self.add_log_entry(
    -732            LogEntry(
    -733                message="new status: unpacking",
    -734                details={"package_url": package_url},
    -735            )
    -736        )
    -737
    -738        # Download the model zip file
    -739        try:
    -740            remotezip = urllib.request.urlopen(package_url)
    -741        except Exception as e:
    -742            raise RuntimeError(f"failed to open {package_url}: {e}")
    +728        zipinmemory = io.BytesIO(remotezip.read())
    +729
    +730        # Unzip the zip file
    +731        zipobj = zipfile.ZipFile(zipinmemory)
    +732
    +733        file_names = set(zipobj.namelist())
    +734        bioimageio_yaml_file_name = identify_bioimageio_yaml_file_name(file_names)
    +735
    +736        rdf: Dict[Any, Any] = yaml.load(
    +737            zipobj.open(bioimageio_yaml_file_name).read().decode()
    +738        )
    +739        if not isinstance(rdf, dict):
    +740            raise ValueError(
    +741                f"Expected {bioimageio_yaml_file_name} to hold a dictionary"
    +742            )
     743
    -744        zipinmemory = io.BytesIO(remotezip.read())
    -745
    -746        # Unzip the zip file
    -747        zipobj = zipfile.ZipFile(zipinmemory)
    -748
    -749        file_names = set(zipobj.namelist())
    -750        bioimageio_yaml_file_name = identify_bioimageio_yaml_file_name(file_names)
    +744        if (rdf_id := rdf.get("id")) is None:
    +745            rdf["id"] = self.concept_id
    +746        elif rdf_id != self.concept_id:
    +747            raise ValueError(
    +748                f"Expected package for {self.concept_id}, "
    +749                + f"but found id {rdf_id} in {package_url}"
    +750            )
     751
    -752        rdf: Dict[Any, Any] = yaml.load(
    -753            zipobj.open(bioimageio_yaml_file_name).read().decode()
    -754        )
    -755        if not isinstance(rdf, dict):
    -756            raise ValueError(
    -757                f"Expected {bioimageio_yaml_file_name} to hold a dictionary"
    -758            )
    -759
    -760        if (rdf_id := rdf.get("id")) is None:
    -761            rdf["id"] = self.concept_id
    -762        elif rdf_id != self.concept_id:
    -763            raise ValueError(
    -764                f"Expected package for {self.concept_id}, "
    -765                + f"but found id {rdf_id} in {package_url}"
    -766            )
    -767
    -768        if "name" not in rdf:
    -769            raise ValueError(f"Missing 'name' in {package_url}")
    -770
    -771        self._set_status(
    -772            UnpackingStatus(description=f"unzipping {package_url} to {self.folder}")
    -773        )
    -774
    -775        collection_data = self.client.load_file("collection.json")
    -776        assert collection_data is not None
    -777        collection = json.loads(collection_data)
    -778        for e in collection["collection"]:
    -779            if e["name"] == rdf["name"]:
    -780                if e["id"] != rdf["id"]:
    -781                    self.add_log_entry(
    -782                        LogEntry(
    -783                            message=f"error: Another resource with name='{rdf['name']}' already exists ({e['id']})"
    -784                        )
    -785                    )
    -786                break
    -787
    -788        # set matching id_emoji
    -789        rdf["id_emoji"] = self.collection.config.id_parts.get_icon(self.concept_id)
    -790        if rdf["id_emoji"] is None:
    -791            self.add_log_entry(
    -792                LogEntry(message=f"error: Failed to get icon for {self.concept_id}")
    -793            )
    -794
    -795        if "id" not in rdf:
    -796            raise ValueError("Missing `id` field")
    +752        if "name" not in rdf:
    +753            raise ValueError(f"Missing 'name' in {package_url}")
    +754
    +755        self._set_status(
    +756            UnpackingStatus(description=f"unzipping {package_url} to {self.folder}")
    +757        )
    +758
    +759        collection_data = self.client.load_file("collection.json")
    +760        assert collection_data is not None
    +761        collection = json.loads(collection_data)
    +762        for e in collection["collection"]:
    +763            if e["name"] == rdf["name"]:
    +764                if e["id"] != rdf["id"]:
    +765                    self.add_log_entry(
    +766                        LogEntry(
    +767                            message=f"error: Another resource with name='{rdf['name']}' already exists ({e['id']})"
    +768                        )
    +769                    )
    +770                break
    +771
    +772        # set matching id_emoji
    +773        rdf["id_emoji"] = self.collection.config.id_parts.get_icon(self.concept_id)
    +774        if rdf["id_emoji"] is None:
    +775            self.add_log_entry(
    +776                LogEntry(message=f"error: Failed to get icon for {self.concept_id}")
    +777            )
    +778
    +779        if "id" not in rdf:
    +780            raise ValueError("Missing `id` field")
    +781
    +782        if not str(rdf["id"]):
    +783            raise ValueError(f"Invalid `id`: {rdf['id']}")
    +784
    +785        if "uploader" not in rdf:
    +786            for r in self.collection.config.reviewers:
    +787                if settings.bioimageio_user_id == r.id:
    +788                    rdf["uploader"] = dict(name=r.name, email=r.email)
    +789                    break
    +790            else:
    +791                raise ValueError("RDF is missing `uploader.email` field.")
    +792
    +793        elif not isinstance(rdf["uploader"], dict) or "email" not in rdf["uploader"]:
    +794            raise ValueError("RDF is missing `uploader.email` field.")
    +795        elif not isinstance(rdf["uploader"]["email"], str):
    +796            raise ValueError("RDF has invalid `uploader.email` field.")
     797
    -798        if not str(rdf["id"]):
    -799            raise ValueError(f"Invalid `id`: {rdf['id']}")
    -800
    -801        if "uploader" not in rdf:
    -802            for r in self.collection.config.reviewers:
    -803                if settings.bioimageio_user_id == r.id:
    -804                    rdf["uploader"] = dict(name=r.name, email=r.email)
    -805                    break
    -806            else:
    -807                raise ValueError("RDF is missing `uploader.email` field.")
    -808
    -809        elif not isinstance(rdf["uploader"], dict) or "email" not in rdf["uploader"]:
    -810            raise ValueError("RDF is missing `uploader.email` field.")
    -811        elif not isinstance(rdf["uploader"]["email"], str):
    -812            raise ValueError("RDF has invalid `uploader.email` field.")
    -813
    -814        uploader: Any = rdf["uploader"]["email"]
    -815        if previous_rdf is not None:
    -816            prev_authors: List[Dict[str, str]] = previous_rdf["authors"]
    -817            assert isinstance(prev_authors, list)
    -818            prev_maintainers: List[Dict[str, str]] = (
    -819                previous_rdf.get("maintainers", []) + prev_authors
    -820            )
    -821            maintainer_emails = [a["email"] for a in prev_maintainers if "email" in a]
    -822            if (
    -823                uploader != previous_rdf.get("uploader", {}).get("email", BOT_EMAIL)
    -824                and uploader not in maintainer_emails
    -825                and uploader not in [r.email for r in self.collection.config.reviewers]
    -826            ):
    -827                raise ValueError(
    -828                    f"uploader '{uploader}' is not a maintainer of '{self.id}' nor a registered bioimageio reviewer."
    -829                )
    -830
    -831        # clean up any previous draft files
    -832        self.client.rm_dir(self.folder + "files/")
    +798        uploader: Any = rdf["uploader"]["email"]
    +799        if previous_rdf is not None:
    +800            prev_authors: List[Dict[str, str]] = previous_rdf["authors"]
    +801            assert isinstance(prev_authors, list)
    +802            prev_maintainers: List[Dict[str, str]] = (
    +803                previous_rdf.get("maintainers", []) + prev_authors
    +804            )
    +805            maintainer_emails = [a["email"] for a in prev_maintainers if "email" in a]
    +806            if (
    +807                uploader != previous_rdf.get("uploader", {}).get("email", BOT_EMAIL)
    +808                and uploader not in maintainer_emails
    +809                and uploader not in [r.email for r in self.collection.config.reviewers]
    +810            ):
    +811                raise ValueError(
    +812                    f"uploader '{uploader}' is not a maintainer of '{self.id}' nor a registered bioimageio reviewer."
    +813                )
    +814
    +815        # clean up any previous draft files
    +816        self.client.rm_dir(self.folder + "files/")
    +817
    +818        # upload new draft files
    +819        def upload(file_name: str, file_data: bytes):
    +820            path = f"{self.folder}files/{file_name}"
    +821            self.client.put(path, io.BytesIO(file_data), length=len(file_data))
    +822
    +823        thumbnails = create_thumbnails(rdf, zipobj)
    +824        config = rdf.setdefault("config", {})
    +825        if isinstance(config, dict):
    +826            bioimageio_config: Any = config.setdefault("bioimageio", {})
    +827            if isinstance(bioimageio_config, dict):
    +828                thumbnail_config: Any = bioimageio_config.setdefault("thumbnails", {})
    +829                if isinstance(thumbnail_config, dict):
    +830                    for oname, (tname, tdata) in thumbnails.items():
    +831                        upload(tname, tdata)
    +832                        thumbnail_config[oname] = tname
     833
    -834        # upload new draft files
    -835        def upload(file_name: str, file_data: bytes):
    -836            path = f"{self.folder}files/{file_name}"
    -837            self.client.put(path, io.BytesIO(file_data), length=len(file_data))
    -838
    -839        thumbnails = create_thumbnails(rdf, zipobj)
    -840        config = rdf.setdefault("config", {})
    -841        if isinstance(config, dict):
    -842            bioimageio_config: Any = config.setdefault("bioimageio", {})
    -843            if isinstance(bioimageio_config, dict):
    -844                thumbnail_config: Any = bioimageio_config.setdefault("thumbnails", {})
    -845                if isinstance(thumbnail_config, dict):
    -846                    for oname, (tname, tdata) in thumbnails.items():
    -847                        upload(tname, tdata)
    -848                        thumbnail_config[oname] = tname
    -849
    -850                if rdf["id_emoji"] is not None:
    -851                    # we have a valid new collection id
    -852                    # remove any nickname from config.bioimageio
    -853                    #   that may have been kept if reusing an older model
    -854                    bioimageio_config.pop("nickname", None)
    -855                    bioimageio_config.pop("nickname_icon", None)
    -856
    -857        rdf_io = io.BytesIO()
    -858        yaml.dump(rdf, rdf_io)
    -859        rdf_data = rdf_io.getvalue()
    -860        upload("rdf.yaml", rdf_data)
    -861
    -862        file_names.remove(bioimageio_yaml_file_name)
    -863        for other in {fn for fn in file_names if is_valid_bioimageio_yaml_name(fn)}:
    -864            logger.warning("ignoring alternative rdf.yaml source '{other}'")
    -865            file_names.remove(other)
    -866
    -867        for file_name in file_names:
    -868            file_data = zipobj.open(file_name).read()
    -869            upload(file_name, file_data)
    -870
    -871        self._set_status(UnpackedStatus())
    +834                if rdf["id_emoji"] is not None:
    +835                    # we have a valid new collection id
    +836                    # remove any nickname from config.bioimageio
    +837                    #   that may have been kept if reusing an older model
    +838                    bioimageio_config.pop("nickname", None)
    +839                    bioimageio_config.pop("nickname_icon", None)
    +840
    +841        rdf_io = io.BytesIO()
    +842        yaml.dump(rdf, rdf_io)
    +843        rdf_data = rdf_io.getvalue()
    +844        upload("rdf.yaml", rdf_data)
    +845
    +846        file_names.remove(bioimageio_yaml_file_name)
    +847        for other in {fn for fn in file_names if is_valid_bioimageio_yaml_name(fn)}:
    +848            logger.warning("ignoring alternative rdf.yaml source '{other}'")
    +849            file_names.remove(other)
    +850
    +851        for file_name in file_names:
    +852            file_data = zipobj.open(file_name).read()
    +853            upload(file_name, file_data)
    +854
    +855        self._set_status(UnpackedStatus())
     
    @@ -4056,8 +3948,8 @@
    Inherited Members
    -
    873    def set_testing_status(self, description: str):
    -874        self._set_status(TestingStatus(description=description))
    +            
    857    def set_testing_status(self, description: str):
    +858        self._set_status(TestingStatus(description=description))
     
    @@ -4075,9 +3967,9 @@
    Inherited Members
    -
    876    def await_review(self):
    -877        """set status to 'awaiting review'"""
    -878        self._set_status(AwaitingReviewStatus())
    +            
    860    def await_review(self):
    +861        """set status to 'awaiting review'"""
    +862        self._set_status(AwaitingReviewStatus())
     
    @@ -4098,24 +3990,24 @@
    Inherited Members
    -
    880    @reviewer_role
    -881    def request_changes(self, reviewer: str, reason: str):
    -882        # map reviewer id to name
    -883        for r in self.collection.config.reviewers:
    -884            if reviewer == r.id:
    -885                reviewer = r.name
    -886                break
    -887
    -888        self._set_status(ChangesRequestedStatus(description=reason))
    -889        self.extend_chat(
    -890            Chat(
    -891                messages=[
    -892                    Message(
    -893                        author="system", text=f"{reviewer} requested changes: {reason}"
    -894                    )
    -895                ]
    -896            )
    -897        )
    +            
    864    @reviewer_role
    +865    def request_changes(self, reviewer: str, reason: str):
    +866        # map reviewer id to name
    +867        for r in self.collection.config.reviewers:
    +868            if reviewer == r.id:
    +869                reviewer = r.name
    +870                break
    +871
    +872        self._set_status(ChangesRequestedStatus(description=reason))
    +873        self.extend_chat(
    +874            Chat(
    +875                messages=[
    +876                    Message(
    +877                        author="system", text=f"{reviewer} requested changes: {reason}"
    +878                    )
    +879                ]
    +880            )
    +881        )
     
    @@ -4136,67 +4028,67 @@
    Inherited Members
    -
    899    @log
    -900    @reviewer_role
    -901    @lock_concept
    -902    def publish(self, reviewer: str) -> Record:
    -903        """mark this staged version candidate as accepted and try to publish it"""
    -904        # map reviewer id to name
    -905        for r in self.collection.config.reviewers:
    -906            if reviewer == r.id:
    -907                reviewer = r.name
    -908                break
    -909
    -910        self._set_status(AcceptedStatus())
    -911        self.extend_chat(
    -912            Chat(
    -913                messages=[
    -914                    Message(
    -915                        author="system",
    -916                        text=f"{reviewer} accepted {self.id} {self.version}",
    -917                    )
    -918                ]
    -919            )
    -920        )
    +            
    883    @log
    +884    @reviewer_role
    +885    @lock_concept
    +886    def publish(self, reviewer: str) -> Record:
    +887        """mark this staged version candidate as accepted and try to publish it"""
    +888        # map reviewer id to name
    +889        for r in self.collection.config.reviewers:
    +890            if reviewer == r.id:
    +891                reviewer = r.name
    +892                break
    +893
    +894        self._set_status(AcceptedStatus())
    +895        self.extend_chat(
    +896            Chat(
    +897                messages=[
    +898                    Message(
    +899                        author="system",
    +900                        text=f"{reviewer} accepted {self.id} {self.version}",
    +901                    )
    +902                ]
    +903            )
    +904        )
    +905
    +906        logger.debug("Publishing {}", self.folder)
    +907
    +908        rdf_data = self.client.load_file(self.rdf_path)
    +909        if rdf_data is None:
    +910            raise RuntimeError(f"Failed to load staged RDF from {self.rdf_path}")
    +911
    +912        rdf: Dict[Any, Any] = yaml.load(rdf_data.decode())
    +913        assert isinstance(rdf, dict)
    +914        version = rdf.get("version", "1")
    +915        if not isinstance(version, (int, float, str)):
    +916            raise ValueError(f"Invalid `version`: '{version}'")
    +917        else:
    +918            version = str(version)
    +919            if version in {v.version for v in self.concept.get_published_versions()}:
    +920                raise ValueError(f"Trying to publish version '{version}' again!")
     921
    -922        logger.debug("Publishing {}", self.folder)
    -923
    -924        rdf_data = self.client.load_file(self.rdf_path)
    -925        if rdf_data is None:
    -926            raise RuntimeError(f"Failed to load staged RDF from {self.rdf_path}")
    +922        # remember previously published concept doi
    +923        if previous_versions := self.concept.get_published_versions():
    +924            concept_doi = previous_versions[0].info.concept_doi
    +925        else:
    +926            concept_doi = None
     927
    -928        rdf: Dict[Any, Any] = yaml.load(rdf_data.decode())
    -929        assert isinstance(rdf, dict)
    -930        version = rdf.get("version", "1")
    -931        if not isinstance(version, (int, float, str)):
    -932            raise ValueError(f"Invalid `version`: '{version}'")
    -933        else:
    -934            version = str(version)
    -935            if version in {v.version for v in self.concept.get_published_versions()}:
    -936                raise ValueError(f"Trying to publish version '{version}' again!")
    -937
    -938        # remember previously published concept doi
    -939        if previous_versions := self.concept.get_published_versions():
    -940            concept_doi = previous_versions[0].info.concept_doi
    -941        else:
    -942            concept_doi = None
    -943
    -944        published = Record(
    -945            client=self.client, concept_id=self.concept_id, version=version
    -946        )
    -947
    -948        # move all files
    -949        self.client.cp_dir(self.folder, published.folder)
    -950
    -951        # overwrite rdf.yaml with updated version_number
    -952        stream = io.StringIO()
    -953        yaml.dump(rdf, stream)
    -954        rdf_data = stream.getvalue().encode()
    -955        self.client.put(self.rdf_path, io.BytesIO(rdf_data), length=len(rdf_data))
    -956        self.client.rm_dir(self.folder)
    -957
    -958        published.update_info(RecordInfo(concept_doi=concept_doi))
    -959        return published
    +928        published = Record(
    +929            client=self.client, concept_id=self.concept_id, version=version
    +930        )
    +931
    +932        # move all files
    +933        self.client.cp_dir(self.folder, published.folder)
    +934
    +935        # overwrite rdf.yaml with updated version_number
    +936        stream = io.StringIO()
    +937        yaml.dump(rdf, stream)
    +938        rdf_data = stream.getvalue().encode()
    +939        self.client.put(self.rdf_path, io.BytesIO(rdf_data), length=len(rdf_data))
    +940        self.client.rm_dir(self.folder)
    +941
    +942        published.update_info(RecordInfo(concept_doi=concept_doi))
    +943        return published
     
    @@ -4251,47 +4143,47 @@
    Inherited Members
    -
     974@dataclass
    - 975class Record(RecordBase):
    - 976    """A representation of a published resource version"""
    - 977
    - 978    version: str
    - 979    """a (semantic) version string"""
    - 980
    - 981    @property
    - 982    def id(self) -> str:
    - 983        return f"{self.concept_id}/{self.version}"
    - 984
    - 985    @property
    - 986    def doi(self):
    - 987        """version specific DOI of Zenodo record"""
    - 988        return self.info.doi
    - 989
    - 990    @property
    - 991    def concept_doi(self):
    - 992        """concept DOI of Zenodo record"""
    - 993        return self.info.concept_doi
    - 994
    - 995    @property
    - 996    def bioimageio_url(self):
    - 997        return f"https://bioimage.io/#/?id={self.concept_id}"
    - 998
    - 999    @property
    -1000    def info(self) -> RecordInfo:
    -1001        return self._get_json(RecordInfo)
    -1002
    -1003    def update_info(self, update: RecordInfo):
    -1004        self._update_json(update)
    -1005
    -1006    def set_dois(self, *, doi: str, concept_doi: str):
    -1007        if self.doi is not None:
    -1008            raise ValueError(f"May not overwrite existing doi={self.doi} with {doi}")
    -1009        if self.concept_doi is not None:
    -1010            raise ValueError(
    -1011                f"May not overwrite existing concept_doi={self.concept_doi} with {concept_doi}"
    -1012            )
    -1013
    -1014        self._update_json(RecordInfo(doi=doi, concept_doi=concept_doi))
    +            
    958@dataclass
    +959class Record(RecordBase):
    +960    """A representation of a published resource version"""
    +961
    +962    version: str
    +963    """a (semantic) version string"""
    +964
    +965    @property
    +966    def id(self) -> str:
    +967        return f"{self.concept_id}/{self.version}"
    +968
    +969    @property
    +970    def doi(self):
    +971        """version specific DOI of Zenodo record"""
    +972        return self.info.doi
    +973
    +974    @property
    +975    def concept_doi(self):
    +976        """concept DOI of Zenodo record"""
    +977        return self.info.concept_doi
    +978
    +979    @property
    +980    def bioimageio_url(self):
    +981        return f"https://bioimage.io/#/?id={self.concept_id}"
    +982
    +983    @property
    +984    def info(self) -> RecordInfo:
    +985        return self._get_json(RecordInfo)
    +986
    +987    def update_info(self, update: RecordInfo):
    +988        self._update_json(update)
    +989
    +990    def set_dois(self, *, doi: str, concept_doi: str):
    +991        if self.doi is not None:
    +992            raise ValueError(f"May not overwrite existing doi={self.doi} with {doi}")
    +993        if self.concept_doi is not None:
    +994            raise ValueError(
    +995                f"May not overwrite existing concept_doi={self.concept_doi} with {concept_doi}"
    +996            )
    +997
    +998        self._update_json(RecordInfo(doi=doi, concept_doi=concept_doi))
     
    @@ -4333,9 +4225,9 @@
    Inherited Members
    -
    981    @property
    -982    def id(self) -> str:
    -983        return f"{self.concept_id}/{self.version}"
    +            
    965    @property
    +966    def id(self) -> str:
    +967        return f"{self.concept_id}/{self.version}"
     
    @@ -4351,10 +4243,10 @@
    Inherited Members
    -
    985    @property
    -986    def doi(self):
    -987        """version specific DOI of Zenodo record"""
    -988        return self.info.doi
    +            
    969    @property
    +970    def doi(self):
    +971        """version specific DOI of Zenodo record"""
    +972        return self.info.doi
     
    @@ -4372,10 +4264,10 @@
    Inherited Members
    -
    990    @property
    -991    def concept_doi(self):
    -992        """concept DOI of Zenodo record"""
    -993        return self.info.concept_doi
    +            
    974    @property
    +975    def concept_doi(self):
    +976        """concept DOI of Zenodo record"""
    +977        return self.info.concept_doi
     
    @@ -4393,9 +4285,9 @@
    Inherited Members
    -
    995    @property
    -996    def bioimageio_url(self):
    -997        return f"https://bioimage.io/#/?id={self.concept_id}"
    +            
    979    @property
    +980    def bioimageio_url(self):
    +981        return f"https://bioimage.io/#/?id={self.concept_id}"
     
    @@ -4411,9 +4303,9 @@
    Inherited Members
    -
     999    @property
    -1000    def info(self) -> RecordInfo:
    -1001        return self._get_json(RecordInfo)
    +            
    983    @property
    +984    def info(self) -> RecordInfo:
    +985        return self._get_json(RecordInfo)
     
    @@ -4431,8 +4323,8 @@
    Inherited Members
    -
    1003    def update_info(self, update: RecordInfo):
    -1004        self._update_json(update)
    +            
    987    def update_info(self, update: RecordInfo):
    +988        self._update_json(update)
     
    @@ -4450,15 +4342,15 @@
    Inherited Members
    -
    1006    def set_dois(self, *, doi: str, concept_doi: str):
    -1007        if self.doi is not None:
    -1008            raise ValueError(f"May not overwrite existing doi={self.doi} with {doi}")
    -1009        if self.concept_doi is not None:
    -1010            raise ValueError(
    -1011                f"May not overwrite existing concept_doi={self.concept_doi} with {concept_doi}"
    -1012            )
    -1013
    -1014        self._update_json(RecordInfo(doi=doi, concept_doi=concept_doi))
    +            
    990    def set_dois(self, *, doi: str, concept_doi: str):
    +991        if self.doi is not None:
    +992            raise ValueError(f"May not overwrite existing doi={self.doi} with {doi}")
    +993        if self.concept_doi is not None:
    +994            raise ValueError(
    +995                f"May not overwrite existing concept_doi={self.concept_doi} with {concept_doi}"
    +996            )
    +997
    +998        self._update_json(RecordInfo(doi=doi, concept_doi=concept_doi))
     
    @@ -4511,30 +4403,30 @@
    Inherited Members
    -
    1017def get_remote_resource_version(
    -1018    client: Client, concept_id: str, version: Union[int, float, str]
    -1019):
    -1020    version = str(version).strip("/")
    -1021    if version == "draft":
    -1022        rv = RecordDraft(client=client, concept_id=concept_id)
    -1023    elif version == "latest":
    -1024        versions = RecordConcept(
    -1025            client=client, concept_id=concept_id
    -1026        ).get_published_versions()
    -1027        if versions:
    -1028            rv = versions[0]
    -1029        else:
    -1030            raise ValueError(
    -1031                f"no published version of '{concept_id}' found."
    -1032                + f" Try '{concept_id}/draft' for the unpublished draft."
    -1033            )
    -1034    else:
    -1035        rv = Record(client=client, concept_id=concept_id, version=version)
    -1036
    -1037    if not rv.exists():
    -1038        raise ValueError(f"'{rv.id}' not found")
    -1039
    -1040    return rv
    +            
    1001def get_remote_resource_version(
    +1002    client: Client, concept_id: str, version: Union[int, float, str]
    +1003):
    +1004    version = str(version).strip("/")
    +1005    if version == "draft":
    +1006        rv = RecordDraft(client=client, concept_id=concept_id)
    +1007    elif version == "latest":
    +1008        versions = RecordConcept(
    +1009            client=client, concept_id=concept_id
    +1010        ).get_published_versions()
    +1011        if versions:
    +1012            rv = versions[0]
    +1013        else:
    +1014            raise ValueError(
    +1015                f"no published version of '{concept_id}' found."
    +1016                + f" Try '{concept_id}/draft' for the unpublished draft."
    +1017            )
    +1018    else:
    +1019        rv = Record(client=client, concept_id=concept_id, version=version)
    +1020
    +1021    if not rv.exists():
    +1022        raise ValueError(f"'{rv.id}' not found")
    +1023
    +1024    return rv
     
    @@ -4552,27 +4444,27 @@
    Inherited Members
    -
    1043def maybe_swap_with_thumbnail(
    -1044    src: Union[Any, Dict[Any, Any], List[Any]], thumbnails: Mapping[str, str]
    -1045) -> Any:
    -1046    if isinstance(src, dict):
    -1047        src_dict: Dict[Any, Any] = src
    -1048        return {
    -1049            k: maybe_swap_with_thumbnail(v, thumbnails) for k, v in src_dict.items()
    -1050        }
    -1051
    -1052    if isinstance(src, list):
    -1053        src_list: List[Any] = src
    -1054        return [maybe_swap_with_thumbnail(s, thumbnails) for s in src_list]
    -1055
    -1056    if isinstance(src, str) and not src.startswith("https://"):
    -1057        clean_name = Path(src).name  # remove any leading './'
    -1058        if clean_name in thumbnails:
    -1059            return thumbnails[clean_name]
    -1060        else:
    -1061            return src
    -1062
    -1063    return src
    +            
    1027def maybe_swap_with_thumbnail(
    +1028    src: Union[Any, Dict[Any, Any], List[Any]], thumbnails: Mapping[str, str]
    +1029) -> Any:
    +1030    if isinstance(src, dict):
    +1031        src_dict: Dict[Any, Any] = src
    +1032        return {
    +1033            k: maybe_swap_with_thumbnail(v, thumbnails) for k, v in src_dict.items()
    +1034        }
    +1035
    +1036    if isinstance(src, list):
    +1037        src_list: List[Any] = src
    +1038        return [maybe_swap_with_thumbnail(s, thumbnails) for s in src_list]
    +1039
    +1040    if isinstance(src, str) and not src.startswith("https://"):
    +1041        clean_name = Path(src).name  # remove any leading './'
    +1042        if clean_name in thumbnails:
    +1043            return thumbnails[clean_name]
    +1044        else:
    +1045            return src
    +1046
    +1047    return src
     
    @@ -4590,34 +4482,34 @@
    Inherited Members
    -
    1066def resolve_relative_path(
    -1067    src: Union[Any, Dict[Any, Any], List[Any]], parsed_root: SplitResult
    -1068) -> Any:
    -1069    if isinstance(src, dict):
    -1070        src_dict: Dict[Any, Any] = src
    -1071        return {k: resolve_relative_path(v, parsed_root) for k, v in src_dict.items()}
    -1072
    -1073    if isinstance(src, list):
    -1074        src_list: List[Any] = src
    -1075        return [resolve_relative_path(s, parsed_root) for s in src_list]
    +            
    1050def resolve_relative_path(
    +1051    src: Union[Any, Dict[Any, Any], List[Any]], parsed_root: SplitResult
    +1052) -> Any:
    +1053    if isinstance(src, dict):
    +1054        src_dict: Dict[Any, Any] = src
    +1055        return {k: resolve_relative_path(v, parsed_root) for k, v in src_dict.items()}
    +1056
    +1057    if isinstance(src, list):
    +1058        src_list: List[Any] = src
    +1059        return [resolve_relative_path(s, parsed_root) for s in src_list]
    +1060
    +1061    if isinstance(src, str):
    +1062        if src.startswith("http") or src.startswith("/") or "." not in src:
    +1063            return src
    +1064        else:
    +1065            return HttpUrl(
    +1066                urlunsplit(
    +1067                    (
    +1068                        parsed_root.scheme,
    +1069                        parsed_root.netloc,
    +1070                        parsed_root.path + "/" + src,
    +1071                        parsed_root.query,
    +1072                        parsed_root.fragment,
    +1073                    )
    +1074                )
    +1075            )
     1076
    -1077    if isinstance(src, str):
    -1078        if src.startswith("http") or src.startswith("/") or "." not in src:
    -1079            return src
    -1080        else:
    -1081            return HttpUrl(
    -1082                urlunsplit(
    -1083                    (
    -1084                        parsed_root.scheme,
    -1085                        parsed_root.netloc,
    -1086                        parsed_root.path + "/" + src,
    -1087                        parsed_root.query,
    -1088                        parsed_root.fragment,
    -1089                    )
    -1090                )
    -1091            )
    -1092
    -1093    return src
    +1077    return src
     
    @@ -4635,205 +4527,212 @@
    Inherited Members
    -
    1096def create_collection_entries(
    -1097    versions: Sequence[Union[Record, RecordDraft]],
    -1098) -> Tuple[List[CollectionEntry], IdMap]:
    -1099    """create collection entries from a single (draft) record"""
    -1100    if not versions:
    -1101        return [], {}
    -1102
    -1103    rdf: Optional[Dict[str, Any]] = None
    -1104    record_version: Optional[Union[Record, RecordDraft]] = None
    -1105    concept: Optional[str] = None
    -1106    id_info: Optional[IdInfo] = None
    -1107
    -1108    id_map: Dict[str, IdInfo] = {}
    -1109    version_infos: List[VersionInfo] = []
    -1110    for record_version in versions[::-1]:  # process oldest to newest
    -1111        rdf_version_data = record_version.client.load_file(record_version.rdf_path)
    -1112        if rdf_version_data is None:
    -1113            logger.error("failed to load {}", record_version.rdf_path)
    -1114            continue
    -1115
    -1116        id_info = IdInfo(
    -1117            source=record_version.rdf_url,
    -1118            sha256=hashlib.sha256(rdf_version_data).hexdigest(),
    -1119        )
    -1120        id_map[record_version.id] = id_info
    -1121        id_map[record_version.concept_id] = id_info
    -1122
    -1123        if record_version.doi is not None:
    -1124            id_map[record_version.doi] = id_info
    -1125
    -1126        if record_version.concept_doi is not None:
    -1127            id_map[record_version.concept_doi] = id_info
    -1128
    -1129        rdf = record_version.get_rdf()
    -1130        if (version_id := rdf["id"]) is not None and version_id not in id_map:
    -1131            id_map[version_id] = id_info
    -1132
    -1133        if rdf["id"].startswith("10.5281/zenodo."):
    -1134            # legacy models
    -1135            concept_end = rdf["id"].rfind("/")
    -1136            concept = rdf["id"][:concept_end]
    -1137        else:
    -1138            concept = rdf["id"]
    -1139
    -1140        assert concept is not None
    -1141        id_map[concept] = id_info
    -1142
    -1143        version_infos.append(
    -1144            VersionInfo(
    -1145                v=record_version.version,
    -1146                created=record_version.info.created,
    -1147                doi=(
    -1148                    None
    -1149                    if isinstance(record_version, RecordDraft)
    -1150                    else record_version.info.doi
    -1151                ),
    -1152            )
    -1153        )
    -1154        compat_reports = record_version.get_all_compatibility_reports()
    -1155        compat_tests: Dict[str, List[TestSummaryEntry]] = {}
    -1156        bioimageio_status = "failed"
    -1157        for r in compat_reports:
    -1158            if r.status == "not-applicable":
    -1159                continue
    -1160
    -1161            if r.tool == f"bioimageio.core_{bioimageio.core.__version__}":
    -1162                bioimageio_status = r.status
    -1163
    -1164            compat_tests.setdefault(r.tool, []).append(
    -1165                TestSummaryEntry(
    -1166                    error=r.error,
    -1167                    name="compatibility check",
    -1168                    status=r.status,
    -1169                    traceback=None,
    -1170                    warnings=None,
    -1171                )
    -1172            )
    -1173
    -1174        test_summary = TestSummary(
    -1175            status=bioimageio_status, tests=compat_tests
    -1176        ).model_dump(mode="json")
    -1177        record_version.client.put_yaml(
    -1178            test_summary, f"{record_version.folder}test_summary.yaml"
    -1179        )
    -1180
    -1181    assert rdf is not None
    -1182    assert record_version is not None
    -1183    assert concept is not None
    -1184    assert id_info is not None
    -1185
    -1186    # create an explicit entry only for the latest version
    -1187    #   (all versions are referenced under `versions`)
    -1188    # upload 'versions.json' summary
    -1189    if isinstance(record_version, Record):
    -1190        versions_info = VersionsInfo(
    -1191            concept_doi=record_version.concept_doi, versions=version_infos[::-1]
    -1192        )
    -1193        record_version.concept.client.put_json(
    -1194            f"{record_version.concept.folder}versions.json",
    -1195            versions_info.model_dump(mode="json"),
    -1196        )
    -1197
    -1198    try:
    -1199        # legacy nickname
    -1200        nickname = str(rdf["config"]["bioimageio"]["nickname"])
    -1201        nickname_icon = str(rdf["config"]["bioimageio"]["nickname_icon"])
    -1202    except KeyError:
    -1203        # id is nickname
    -1204        nickname = None
    -1205        nickname_icon = rdf.get("id_emoji")
    +            
    1080def create_collection_entries(
    +1081    versions: Sequence[Union[Record, RecordDraft]],
    +1082) -> Tuple[List[CollectionEntry], IdMap]:
    +1083    """create collection entries from a single (draft) record"""
    +1084    if not versions:
    +1085        return [], {}
    +1086
    +1087    rdf: Optional[Dict[str, Any]] = None
    +1088    record_version: Optional[Union[Record, RecordDraft]] = None
    +1089    concept: Optional[str] = None
    +1090    id_info: Optional[IdInfo] = None
    +1091
    +1092    id_map: Dict[str, IdInfo] = {}
    +1093    version_infos: List[VersionInfo] = []
    +1094    for record_version in versions[::-1]:  # process oldest to newest
    +1095        rdf_version_data = record_version.client.load_file(record_version.rdf_path)
    +1096        if rdf_version_data is None:
    +1097            logger.error("failed to load {}", record_version.rdf_path)
    +1098            continue
    +1099
    +1100        id_info = IdInfo(
    +1101            source=record_version.rdf_url,
    +1102            sha256=hashlib.sha256(rdf_version_data).hexdigest(),
    +1103        )
    +1104        id_map[record_version.id] = id_info
    +1105        id_map[record_version.concept_id] = id_info
    +1106
    +1107        if record_version.doi is not None:
    +1108            id_map[record_version.doi] = id_info
    +1109
    +1110        if record_version.concept_doi is not None:
    +1111            id_map[record_version.concept_doi] = id_info
    +1112
    +1113        rdf = record_version.get_rdf()
    +1114        if (version_id := rdf["id"]) is not None and version_id not in id_map:
    +1115            id_map[version_id] = id_info
    +1116
    +1117        if rdf["id"].startswith("10.5281/zenodo."):
    +1118            # legacy models
    +1119            concept_end = rdf["id"].rfind("/")
    +1120            concept = rdf["id"][:concept_end]
    +1121        else:
    +1122            concept = rdf["id"]
    +1123
    +1124        assert concept is not None
    +1125        id_map[concept] = id_info
    +1126
    +1127        version_infos.append(
    +1128            VersionInfo(
    +1129                v=record_version.version,
    +1130                created=record_version.info.created,
    +1131                doi=(
    +1132                    None
    +1133                    if isinstance(record_version, RecordDraft)
    +1134                    else record_version.info.doi
    +1135                ),
    +1136            )
    +1137        )
    +1138        compat_reports = record_version.get_all_compatibility_reports()
    +1139        compat_tests: Dict[str, List[TestSummaryEntry]] = {}
    +1140        bioimageio_status = "failed"
    +1141        for r in compat_reports:
    +1142            if r.status == "not-applicable":
    +1143                continue
    +1144
    +1145            if r.tool == f"bioimageio.core_{bioimageio.core.__version__}":
    +1146                bioimageio_status = r.status
    +1147
    +1148            compat_tests.setdefault(r.tool, []).append(
    +1149                TestSummaryEntry(
    +1150                    error=r.error,
    +1151                    name="compatibility check",
    +1152                    status=r.status,
    +1153                    traceback=None,
    +1154                    warnings=None,
    +1155                )
    +1156            )
    +1157
    +1158        test_summary = TestSummary(
    +1159            status=bioimageio_status, tests=compat_tests
    +1160        ).model_dump(mode="json")
    +1161        record_version.client.put_yaml(
    +1162            test_summary, f"{record_version.folder}test_summary.yaml"
    +1163        )
    +1164
    +1165    assert rdf is not None
    +1166    assert record_version is not None
    +1167    assert concept is not None
    +1168    assert id_info is not None
    +1169
    +1170    # create an explicit entry only for the latest version
    +1171    #   (all versions are referenced under `versions`)
    +1172    # upload 'versions.json' summary
    +1173    if isinstance(record_version, Record):
    +1174        versions_info = VersionsInfo(
    +1175            concept_doi=record_version.concept_doi, versions=version_infos[::-1]
    +1176        )
    +1177        record_version.concept.client.put_json(
    +1178            f"{record_version.concept.folder}versions.json",
    +1179            versions_info.model_dump(mode="json"),
    +1180        )
    +1181        status = None
    +1182    elif isinstance(record_version, RecordDraft):
    +1183        status = record_version.info.status
    +1184    else:
    +1185        assert_never(record_version)
    +1186
    +1187    try:
    +1188        # legacy nickname
    +1189        nickname = str(rdf["config"]["bioimageio"]["nickname"])
    +1190        nickname_icon = str(rdf["config"]["bioimageio"]["nickname_icon"])
    +1191    except KeyError:
    +1192        # id is nickname
    +1193        nickname = None
    +1194        nickname_icon = rdf.get("id_emoji")
    +1195
    +1196    if nickname == concept:
    +1197        nickname = None
    +1198
    +1199    if nickname is not None:
    +1200        id_map[nickname] = id_info
    +1201
    +1202    legacy_download_count = LEGACY_DOWNLOAD_COUNTS.get(nickname or concept, 0)
    +1203
    +1204    # TODO: read new download count
    +1205    download_count = "?" if legacy_download_count == 0 else legacy_download_count
     1206
    -1207    if nickname == concept:
    -1208        nickname = None
    -1209
    -1210    if nickname is not None:
    -1211        id_map[nickname] = id_info
    -1212
    -1213    legacy_download_count = LEGACY_DOWNLOAD_COUNTS.get(nickname or concept, 0)
    +1207    # ingest compatibility reports
    +1208    links = set(rdf.get("links", []))
    +1209    tags = set(rdf.get("tags", []))
    +1210    compat_reports = record_version.get_all_compatibility_reports()
    +1211
    +1212    def get_compat_tag(tool: str):
    +1213        """make a special, derived tag for the automatic compatibility check result
     1214
    -1215    # TODO: read new download count
    -1216    download_count = "?" if legacy_download_count == 0 else legacy_download_count
    -1217
    -1218    # ingest compatibility reports
    -1219    links = set(rdf.get("links", []))
    -1220    tags = set(rdf.get("tags", []))
    -1221    compat_reports = record_version.get_all_compatibility_reports()
    +1215        of a tool to avoid overwriting plain manual tags like 'ilastik'.
    +1216        """
    +1217        return f"{tool}-compatible"
    +1218
    +1219    # remove all version unspecific tool tags
    +1220    for r in compat_reports:
    +1221        tags.discard(get_compat_tag(r.tool_wo_version))
     1222
    -1223    def get_compat_tag(tool: str):
    -1224        """make a special, derived tag for the automatic compatibility check result
    -1225
    -1226        of a tool to avoid overwriting plain manual tags like 'ilastik'.
    -1227        """
    -1228        return f"{tool}-compatible"
    -1229
    -1230    # remove all version unspecific tool tags
    -1231    for r in compat_reports:
    -1232        tags.discard(get_compat_tag(r.tool_wo_version))
    -1233
    -1234    # update links and tags with compatible tools
    -1235    for r in compat_reports:
    -1236        if r.status == "passed":
    -1237            links.update(r.links)
    -1238            tags.add(get_compat_tag(r.tool))  # add version unspecific tag
    -1239            tags.add(get_compat_tag(r.tool_wo_version))
    -1240        else:
    -1241            tags.discard(get_compat_tag(r.tool))
    -1242
    -1243    try:
    -1244        thumbnails = rdf["config"]["bioimageio"]["thumbnails"]
    -1245    except KeyError:
    -1246        thumbnails: Dict[Any, Any] = {}
    -1247    else:
    -1248        if not isinstance(thumbnails, dict):
    -1249            thumbnails = {}
    +1223    # update links and tags with compatible tools
    +1224    for r in compat_reports:
    +1225        if r.status == "passed":
    +1226            links.update(r.links)
    +1227            tags.add(get_compat_tag(r.tool))  # add version unspecific tag
    +1228            tags.add(get_compat_tag(r.tool_wo_version))
    +1229        else:
    +1230            tags.discard(get_compat_tag(r.tool))
    +1231
    +1232    try:
    +1233        thumbnails = rdf["config"]["bioimageio"]["thumbnails"]
    +1234    except KeyError:
    +1235        thumbnails: Dict[Any, Any] = {}
    +1236    else:
    +1237        if not isinstance(thumbnails, dict):
    +1238            thumbnails = {}
    +1239
    +1240    # get parsed root
    +1241    with ValidationContext(perform_io_checks=False):
    +1242        rdf_url = HttpUrl(record_version.rdf_url)
    +1243
    +1244    root_url = str(rdf_url.parent)
    +1245    assert root_url == ((root := record_version.get_file_url("").strip("/"))), (
    +1246        root_url,
    +1247        root,
    +1248    )
    +1249    parsed_root = urlsplit(root_url)
     1250
    -1251    # get parsed root
    -1252    with ValidationContext(perform_io_checks=False):
    -1253        rdf_url = HttpUrl(record_version.rdf_url)
    -1254
    -1255    root_url = str(rdf_url.parent)
    -1256    assert root_url == ((root := record_version.get_file_url("").strip("/"))), (
    -1257        root_url,
    -1258        root,
    -1259    )
    -1260    parsed_root = urlsplit(root_url)
    -1261
    -1262    return [
    -1263        CollectionEntry(
    -1264            authors=rdf.get("authors", []),
    -1265            badges=resolve_relative_path(
    -1266                maybe_swap_with_thumbnail(rdf.get("badges", []), thumbnails),
    -1267                parsed_root,
    -1268            ),
    -1269            concept_doi=record_version.concept_doi,
    -1270            covers=resolve_relative_path(
    -1271                maybe_swap_with_thumbnail(rdf.get("covers", []), thumbnails),
    -1272                parsed_root,
    -1273            ),
    -1274            created=record_version.info.created,
    -1275            description=rdf["description"],
    -1276            download_count=download_count,
    -1277            download_url=rdf["download_url"] if "download_url" in rdf else None,
    -1278            icon=resolve_relative_path(
    -1279                maybe_swap_with_thumbnail(rdf.get("icon"), thumbnails), parsed_root
    -1280            ),
    -1281            id=concept,
    -1282            license=rdf.get("license"),
    -1283            links=list(links),
    -1284            name=rdf["name"],
    -1285            nickname_icon=nickname_icon,
    -1286            nickname=nickname,
    -1287            rdf_source=AnyUrl(record_version.rdf_url),
    -1288            root_url=root_url,
    -1289            tags=list(tags),
    -1290            training_data=rdf["training_data"] if "training_data" in rdf else None,
    -1291            type=rdf["type"],
    -1292            source=rdf.get("source"),
    -1293        )
    -1294    ], id_map
    +1251    return [
    +1252        CollectionEntry(
    +1253            authors=rdf.get("authors", []),
    +1254            uploader=rdf.get("uploader", dict(email="bioimageiobot@gmail.com")),
    +1255            badges=resolve_relative_path(
    +1256                maybe_swap_with_thumbnail(rdf.get("badges", []), thumbnails),
    +1257                parsed_root,
    +1258            ),
    +1259            concept_doi=record_version.concept_doi,
    +1260            covers=resolve_relative_path(
    +1261                maybe_swap_with_thumbnail(rdf.get("covers", []), thumbnails),
    +1262                parsed_root,
    +1263            ),
    +1264            created=record_version.info.created,
    +1265            description=rdf["description"],
    +1266            download_count=download_count,
    +1267            download_url=rdf["download_url"] if "download_url" in rdf else None,
    +1268            icon=resolve_relative_path(
    +1269                maybe_swap_with_thumbnail(rdf.get("icon"), thumbnails), parsed_root
    +1270            ),
    +1271            id=concept,
    +1272            license=rdf.get("license"),
    +1273            links=list(links),
    +1274            name=rdf["name"],
    +1275            nickname_icon=nickname_icon,
    +1276            nickname=nickname,
    +1277            rdf_source=AnyUrl(record_version.rdf_url),
    +1278            root_url=root_url,
    +1279            tags=list(tags),
    +1280            training_data=rdf["training_data"] if "training_data" in rdf else None,
    +1281            type=rdf["type"],
    +1282            source=rdf.get("source"),
    +1283            status=status,
    +1284        )
    +1285    ], id_map
     
    diff --git a/search.js b/search.js index 8cf41f80..a0b1a225 100644 --- a/search.js +++ b/search.js @@ -1,6 +1,6 @@ window.pdocSearch = (function(){ /** elasticlunr - http://weixsong.github.io * Copyright (C) 2017 Oliver Nightingale * Copyright (C) 2017 Wei Song * MIT Licensed */!function(){function e(e){if(null===e||"object"!=typeof e)return e;var t=e.constructor();for(var n in e)e.hasOwnProperty(n)&&(t[n]=e[n]);return t}var t=function(e){var n=new t.Index;return n.pipeline.add(t.trimmer,t.stopWordFilter,t.stemmer),e&&e.call(n,n),n};t.version="0.9.5",lunr=t,t.utils={},t.utils.warn=function(e){return function(t){e.console&&console.warn&&console.warn(t)}}(this),t.utils.toString=function(e){return void 0===e||null===e?"":e.toString()},t.EventEmitter=function(){this.events={}},t.EventEmitter.prototype.addListener=function(){var e=Array.prototype.slice.call(arguments),t=e.pop(),n=e;if("function"!=typeof t)throw new TypeError("last argument must be a function");n.forEach(function(e){this.hasHandler(e)||(this.events[e]=[]),this.events[e].push(t)},this)},t.EventEmitter.prototype.removeListener=function(e,t){if(this.hasHandler(e)){var n=this.events[e].indexOf(t);-1!==n&&(this.events[e].splice(n,1),0==this.events[e].length&&delete this.events[e])}},t.EventEmitter.prototype.emit=function(e){if(this.hasHandler(e)){var t=Array.prototype.slice.call(arguments,1);this.events[e].forEach(function(e){e.apply(void 0,t)},this)}},t.EventEmitter.prototype.hasHandler=function(e){return e in this.events},t.tokenizer=function(e){if(!arguments.length||null===e||void 0===e)return[];if(Array.isArray(e)){var n=e.filter(function(e){return null===e||void 0===e?!1:!0});n=n.map(function(e){return t.utils.toString(e).toLowerCase()});var i=[];return n.forEach(function(e){var n=e.split(t.tokenizer.seperator);i=i.concat(n)},this),i}return e.toString().trim().toLowerCase().split(t.tokenizer.seperator)},t.tokenizer.defaultSeperator=/[\s\-]+/,t.tokenizer.seperator=t.tokenizer.defaultSeperator,t.tokenizer.setSeperator=function(e){null!==e&&void 0!==e&&"object"==typeof e&&(t.tokenizer.seperator=e)},t.tokenizer.resetSeperator=function(){t.tokenizer.seperator=t.tokenizer.defaultSeperator},t.tokenizer.getSeperator=function(){return t.tokenizer.seperator},t.Pipeline=function(){this._queue=[]},t.Pipeline.registeredFunctions={},t.Pipeline.registerFunction=function(e,n){n in t.Pipeline.registeredFunctions&&t.utils.warn("Overwriting existing registered function: "+n),e.label=n,t.Pipeline.registeredFunctions[n]=e},t.Pipeline.getRegisteredFunction=function(e){return e in t.Pipeline.registeredFunctions!=!0?null:t.Pipeline.registeredFunctions[e]},t.Pipeline.warnIfFunctionNotRegistered=function(e){var n=e.label&&e.label in this.registeredFunctions;n||t.utils.warn("Function is not registered with pipeline. This may cause problems when serialising the index.\n",e)},t.Pipeline.load=function(e){var n=new t.Pipeline;return e.forEach(function(e){var i=t.Pipeline.getRegisteredFunction(e);if(!i)throw new Error("Cannot load un-registered function: "+e);n.add(i)}),n},t.Pipeline.prototype.add=function(){var e=Array.prototype.slice.call(arguments);e.forEach(function(e){t.Pipeline.warnIfFunctionNotRegistered(e),this._queue.push(e)},this)},t.Pipeline.prototype.after=function(e,n){t.Pipeline.warnIfFunctionNotRegistered(n);var i=this._queue.indexOf(e);if(-1===i)throw new Error("Cannot find existingFn");this._queue.splice(i+1,0,n)},t.Pipeline.prototype.before=function(e,n){t.Pipeline.warnIfFunctionNotRegistered(n);var i=this._queue.indexOf(e);if(-1===i)throw new Error("Cannot find existingFn");this._queue.splice(i,0,n)},t.Pipeline.prototype.remove=function(e){var t=this._queue.indexOf(e);-1!==t&&this._queue.splice(t,1)},t.Pipeline.prototype.run=function(e){for(var t=[],n=e.length,i=this._queue.length,o=0;n>o;o++){for(var r=e[o],s=0;i>s&&(r=this._queue[s](r,o,e),void 0!==r&&null!==r);s++);void 0!==r&&null!==r&&t.push(r)}return t},t.Pipeline.prototype.reset=function(){this._queue=[]},t.Pipeline.prototype.get=function(){return this._queue},t.Pipeline.prototype.toJSON=function(){return this._queue.map(function(e){return t.Pipeline.warnIfFunctionNotRegistered(e),e.label})},t.Index=function(){this._fields=[],this._ref="id",this.pipeline=new t.Pipeline,this.documentStore=new t.DocumentStore,this.index={},this.eventEmitter=new t.EventEmitter,this._idfCache={},this.on("add","remove","update",function(){this._idfCache={}}.bind(this))},t.Index.prototype.on=function(){var e=Array.prototype.slice.call(arguments);return this.eventEmitter.addListener.apply(this.eventEmitter,e)},t.Index.prototype.off=function(e,t){return this.eventEmitter.removeListener(e,t)},t.Index.load=function(e){e.version!==t.version&&t.utils.warn("version mismatch: current "+t.version+" importing "+e.version);var n=new this;n._fields=e.fields,n._ref=e.ref,n.documentStore=t.DocumentStore.load(e.documentStore),n.pipeline=t.Pipeline.load(e.pipeline),n.index={};for(var i in e.index)n.index[i]=t.InvertedIndex.load(e.index[i]);return n},t.Index.prototype.addField=function(e){return this._fields.push(e),this.index[e]=new t.InvertedIndex,this},t.Index.prototype.setRef=function(e){return this._ref=e,this},t.Index.prototype.saveDocument=function(e){return this.documentStore=new t.DocumentStore(e),this},t.Index.prototype.addDoc=function(e,n){if(e){var n=void 0===n?!0:n,i=e[this._ref];this.documentStore.addDoc(i,e),this._fields.forEach(function(n){var o=this.pipeline.run(t.tokenizer(e[n]));this.documentStore.addFieldLength(i,n,o.length);var r={};o.forEach(function(e){e in r?r[e]+=1:r[e]=1},this);for(var s in r){var u=r[s];u=Math.sqrt(u),this.index[n].addToken(s,{ref:i,tf:u})}},this),n&&this.eventEmitter.emit("add",e,this)}},t.Index.prototype.removeDocByRef=function(e){if(e&&this.documentStore.isDocStored()!==!1&&this.documentStore.hasDoc(e)){var t=this.documentStore.getDoc(e);this.removeDoc(t,!1)}},t.Index.prototype.removeDoc=function(e,n){if(e){var n=void 0===n?!0:n,i=e[this._ref];this.documentStore.hasDoc(i)&&(this.documentStore.removeDoc(i),this._fields.forEach(function(n){var o=this.pipeline.run(t.tokenizer(e[n]));o.forEach(function(e){this.index[n].removeToken(e,i)},this)},this),n&&this.eventEmitter.emit("remove",e,this))}},t.Index.prototype.updateDoc=function(e,t){var t=void 0===t?!0:t;this.removeDocByRef(e[this._ref],!1),this.addDoc(e,!1),t&&this.eventEmitter.emit("update",e,this)},t.Index.prototype.idf=function(e,t){var n="@"+t+"/"+e;if(Object.prototype.hasOwnProperty.call(this._idfCache,n))return this._idfCache[n];var i=this.index[t].getDocFreq(e),o=1+Math.log(this.documentStore.length/(i+1));return this._idfCache[n]=o,o},t.Index.prototype.getFields=function(){return this._fields.slice()},t.Index.prototype.search=function(e,n){if(!e)return[];e="string"==typeof e?{any:e}:JSON.parse(JSON.stringify(e));var i=null;null!=n&&(i=JSON.stringify(n));for(var o=new t.Configuration(i,this.getFields()).get(),r={},s=Object.keys(e),u=0;u0&&t.push(e);for(var i in n)"docs"!==i&&"df"!==i&&this.expandToken(e+i,t,n[i]);return t},t.InvertedIndex.prototype.toJSON=function(){return{root:this.root}},t.Configuration=function(e,n){var e=e||"";if(void 0==n||null==n)throw new Error("fields should not be null");this.config={};var i;try{i=JSON.parse(e),this.buildUserConfig(i,n)}catch(o){t.utils.warn("user configuration parse failed, will use default configuration"),this.buildDefaultConfig(n)}},t.Configuration.prototype.buildDefaultConfig=function(e){this.reset(),e.forEach(function(e){this.config[e]={boost:1,bool:"OR",expand:!1}},this)},t.Configuration.prototype.buildUserConfig=function(e,n){var i="OR",o=!1;if(this.reset(),"bool"in e&&(i=e.bool||i),"expand"in e&&(o=e.expand||o),"fields"in e)for(var r in e.fields)if(n.indexOf(r)>-1){var s=e.fields[r],u=o;void 0!=s.expand&&(u=s.expand),this.config[r]={boost:s.boost||0===s.boost?s.boost:1,bool:s.bool||i,expand:u}}else t.utils.warn("field name in user configuration not found in index instance fields");else this.addAllFields2UserConfig(i,o,n)},t.Configuration.prototype.addAllFields2UserConfig=function(e,t,n){n.forEach(function(n){this.config[n]={boost:1,bool:e,expand:t}},this)},t.Configuration.prototype.get=function(){return this.config},t.Configuration.prototype.reset=function(){this.config={}},lunr.SortedSet=function(){this.length=0,this.elements=[]},lunr.SortedSet.load=function(e){var t=new this;return t.elements=e,t.length=e.length,t},lunr.SortedSet.prototype.add=function(){var e,t;for(e=0;e1;){if(r===e)return o;e>r&&(t=o),r>e&&(n=o),i=n-t,o=t+Math.floor(i/2),r=this.elements[o]}return r===e?o:-1},lunr.SortedSet.prototype.locationFor=function(e){for(var t=0,n=this.elements.length,i=n-t,o=t+Math.floor(i/2),r=this.elements[o];i>1;)e>r&&(t=o),r>e&&(n=o),i=n-t,o=t+Math.floor(i/2),r=this.elements[o];return r>e?o:e>r?o+1:void 0},lunr.SortedSet.prototype.intersect=function(e){for(var t=new lunr.SortedSet,n=0,i=0,o=this.length,r=e.length,s=this.elements,u=e.elements;;){if(n>o-1||i>r-1)break;s[n]!==u[i]?s[n]u[i]&&i++:(t.add(s[n]),n++,i++)}return t},lunr.SortedSet.prototype.clone=function(){var e=new lunr.SortedSet;return e.elements=this.toArray(),e.length=e.elements.length,e},lunr.SortedSet.prototype.union=function(e){var t,n,i;this.length>=e.length?(t=this,n=e):(t=e,n=this),i=t.clone();for(var o=0,r=n.toArray();o\"internal\n\"collection\n\"backup

    \n\n

    \"last\n\"last\n\"last

    \n\n

    \"ilastik

    \n\n

    \"code

    \n\n

    collection

    \n\n

    This repository is used to manage the resources displayed on bioimage.io.

    \n\n

    Most users will not directly dispatch the workflows defined in this reporitory, but should instead login on bioimage.io and use the front-end to interact with the bioimage.io collection.

    \n\n

    We currently do not have a workflow for direct upload, but publicly available resource packages may be staged with a stage workflow dispatch.

    \n\n

    Maintaining the bioimage.io Collection

    \n\n

    In order to update or add new resources to the bioimage.io collection, they have to undergo review.\nCurrent reviewers are listed in bioimageio_collection_config.json, under section reviewers.

    \n\n

    Reviewer Onboarding

    \n\n
      \n
    1. Open a pull request, adding a person to the list of reviewers, see https://github.com/bioimage-io/collection/pull/75 for an example.\n
        \n
      • one public email address is required
      • \n
      • github id can be found using https://api.github.com/users/<github_username>
      • \n
    2. \n
    3. So the changes can be applied, the service needs to be restored manually. Reach out to the team or leave an issue.
    4. \n
    5. Once the pull request has been merged, the new reviewer can\n
        \n
      • accept resource drafts
      • \n
      • request changes on resource drafts
      • \n
      • upload a new version for any resource
      • \n
    6. \n
    \n\n

    Adding a bioimage.io resource

    \n\n

    A bioimage.io resource is created by a user uploading a _resource package_.\nSuch a _resource package_ could e.g. be a newly uploaded _model package_, or _notebook package_.\nTypically, uploaders would go via bioimage.io/upload.\nAlternatively, any direct link to a downloadable resource package (.zip-file) would work.\nThe latter option is reserved for members of this repository (or the bioimageio org).\nOnce available online the _resource package_ is staged (see Staging section), tested (see Testing section), and reviewed (see Review section).

    \n\n
    graph TD;\n stage[stage]\n test[test]\n cr[request changes]\n publish[accept/publish]\n backup[backup to Zenodo]\n\n stage-->test\n test-->cr\n cr-->stage\n test-->publish\n publish-->backup\n
    \n\n

    Staging

    \n\n

    If the _resource package_ was uploaded via the bioimage.io website, the staging of the new resource draft is initiated automatically by the uploader service.\nOtherwise, given a download URL to a _resource package_, the stage workflow needs to be dispatched manually, or via github api (\"run workflow\")1.

    \n\n

    Staging unpacks the files from the zipped resource package to our public S3.\nOnce unpacked, the staged _resource draft_ is automatically tested (the test workflow is dispatched automatically at the end of the stage workflow).

    \n\n

    Testing

    \n\n

    Staged resource drafts are automatically tested:

    \n\n
      \n
    • Is their metadata valid?
    • \n
    • Can test outputs be reproduced from test inputs?
    • \n
    • Are linked URLs available?
    • \n
    • ...
    • \n
    \n\n

    Tests can also be triggered (via github api or manually) by dispatching the test workflow2.

    \n\n

    Once the tests are completed, the uploader gets a notification via email that their draft is awaiting review; now a reviewer needs to take a look.

    \n\n

    An overview of all pending _resource drafts_ can be found at https://bioimageio-uploader.netlify.app/#/status.\nA _draft_ is identified by its concept id (id from the rdf.yaml).

    \n\n

    Review

    \n\n

    Reviewers should check the models for technical correctness (aided by CI, see Testing section) and contents/metadata of the resource.

    \n\n

    To this end it can be helpful to check the logs displayed at https://bioimageio-uploader.netlify.app/#/status/<concept_id>.\nThere information about automated workflow steps and validation outcome is logged.\nAdditionally an 'error' status may be shown if an exception occured in the GitHub workflow run producing the log.\nTo be able to see all the packaged models along with the 'rdf.yaml' as well as covers and other documentation, go to the draft collection and download the model from there.

    \n\n

    For models, reviewers can use the model documentation as a guide.

    \n\n

    Reviewers can:

    \n\n
      \n
    • _request changes_:\nA contributor is expected to upload an updated (fixed) draft (which overwrites the current draft).\nThis can be done either by the website, or the stage workflow.\nImportant is to keep the id the same.
    • \n
    • _apply minor changes_:\nFor minor changes it is often not necessary to involve the contributor directly.\nSuch changes could be e.g. obvious typos in some of the fields.\nReviewers can apply changes locally to the _resource package_ and re-upload (using the same id), or, given S3 credentials, files could also be changed in place.\nLatter way of changing requires manually triggering the tests (see Testing section).
    • \n
    • _accept_:\nAccepting the _resource draft_ via the web interface triggers the publish workflow, which creates a new unique _resource version_.\nAs a result, the resource is published, the draft deleted and, thus, the _resource_ is available via the bioimage.io website.\nThe backup workflow will upload/publish the _resource version_ to zenodo using the bioimage.io bot account (tagged with backup.bioimage.io).
    • \n
    \n\n

    Add community partner

    \n\n

    To link yourself as a community partner, please create a PR to insert relevant metadata into bioimageio_collection_config.json under \"partners\".\nCheckout ilastik partner entry for an example.

    \n\n

    Add community partner compatibility checks

    \n\n

    Any community partner is invited to add a GitHub Actions workflow in this repo (please make a PR) that generates reports on its software compatibility with new and updated resources in the bioimage.io collection.\nSee ilastik compatibility checks workflow for an example.

    \n\n

    If you are not familiar with GitHub Actions workflows, we can help you to set this up analog to our existing community partner compatibility checks.\nIdeally you can provide a script to create a compatibility report (a relativley simple json file) for a given resource description. see this Python script as an example.

    \n\n
    \n
    \n
      \n
    1. \n

      Parameters to this workflow are bioimage.io resource concept ID (id from the rdf.yaml), and Download URL of the resource package zip-file, which should contain a publicly reachable URL to a _resource package_ .zip-file. 

      \n
    2. \n\n
    3. \n

      Parameters to this workflow are Bioimage.io resource concept ID (id from the rdf.yaml), and Published version or 'draft' (optional, usually draft). 

      \n
    4. \n
    \n
    \n"}, "bioimageio_collection_backoffice.backup": {"fullname": "bioimageio_collection_backoffice.backup", "modulename": "bioimageio_collection_backoffice.backup", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.backup.yaml": {"fullname": "bioimageio_collection_backoffice.backup.yaml", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.backup.SkipForNow": {"fullname": "bioimageio_collection_backoffice.backup.SkipForNow", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "SkipForNow", "kind": "class", "doc": "

    Method or function hasn't been implemented yet.

    \n", "bases": "builtins.NotImplementedError"}, "bioimageio_collection_backoffice.backup.backup": {"fullname": "bioimageio_collection_backoffice.backup.backup", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "backup", "kind": "function", "doc": "

    backup all published resources to their own zenodo records

    \n", "signature": "(client: bioimageio_collection_backoffice.s3_client.Client):", "funcdef": "def"}, "bioimageio_collection_backoffice.backup.backup_published_version": {"fullname": "bioimageio_collection_backoffice.backup.backup_published_version", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "backup_published_version", "kind": "function", "doc": "

    \n", "signature": "(v: bioimageio_collection_backoffice.remote_collection.Record):", "funcdef": "def"}, "bioimageio_collection_backoffice.backup.rdf_authors_to_metadata_creators": {"fullname": "bioimageio_collection_backoffice.backup.rdf_authors_to_metadata_creators", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "rdf_authors_to_metadata_creators", "kind": "function", "doc": "

    \n", "signature": "(\trdf: Union[Annotated[Union[Annotated[Union[bioimageio.spec.application.v0_2.ApplicationDescr, bioimageio.spec.application.v0_3.ApplicationDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.dataset.v0_2.DatasetDescr, bioimageio.spec.dataset.v0_3.DatasetDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.model.v0_4.ModelDescr, bioimageio.spec.model.v0_5.ModelDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.notebook.v0_2.NotebookDescr, bioimageio.spec.notebook.v0_3.NotebookDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)]], Discriminator(discriminator='type', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.generic.v0_2.GenericDescr, bioimageio.spec.generic.v0_3.GenericDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)]]):", "funcdef": "def"}, "bioimageio_collection_backoffice.backup.rdf_to_zenodo_metadata": {"fullname": "bioimageio_collection_backoffice.backup.rdf_to_zenodo_metadata", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "rdf_to_zenodo_metadata", "kind": "function", "doc": "

    \n", "signature": "(\trdf: Union[Annotated[Union[Annotated[Union[bioimageio.spec.application.v0_2.ApplicationDescr, bioimageio.spec.application.v0_3.ApplicationDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.dataset.v0_2.DatasetDescr, bioimageio.spec.dataset.v0_3.DatasetDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.model.v0_4.ModelDescr, bioimageio.spec.model.v0_5.ModelDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.notebook.v0_2.NotebookDescr, bioimageio.spec.notebook.v0_3.NotebookDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)]], Discriminator(discriminator='type', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.generic.v0_2.GenericDescr, bioimageio.spec.generic.v0_3.GenericDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)]],\t*,\tadditional_note: str = '\\n(Uploaded via https://bioimage.io)',\tpublication_date: datetime.datetime,\trdf_file_name: str) -> Dict[str, Any]:", "funcdef": "def"}, "bioimageio_collection_backoffice.backup.generate_related_identifiers_from_rdf": {"fullname": "bioimageio_collection_backoffice.backup.generate_related_identifiers_from_rdf", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "generate_related_identifiers_from_rdf", "kind": "function", "doc": "

    \n", "signature": "(\trdf: Union[Annotated[Union[Annotated[Union[bioimageio.spec.application.v0_2.ApplicationDescr, bioimageio.spec.application.v0_3.ApplicationDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.dataset.v0_2.DatasetDescr, bioimageio.spec.dataset.v0_3.DatasetDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.model.v0_4.ModelDescr, bioimageio.spec.model.v0_5.ModelDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.notebook.v0_2.NotebookDescr, bioimageio.spec.notebook.v0_3.NotebookDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)]], Discriminator(discriminator='type', custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[bioimageio.spec.generic.v0_2.GenericDescr, bioimageio.spec.generic.v0_3.GenericDescr], Discriminator(discriminator='format_version', custom_error_type=None, custom_error_message=None, custom_error_context=None)]],\trdf_file_name: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.cache": {"fullname": "bioimageio_collection_backoffice.cache", "modulename": "bioimageio_collection_backoffice.cache", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.cache.Ks": {"fullname": "bioimageio_collection_backoffice.cache.Ks", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "Ks", "kind": "variable", "doc": "

    \n", "default_value": "Ks"}, "bioimageio_collection_backoffice.cache.CacheInfo": {"fullname": "bioimageio_collection_backoffice.cache.CacheInfo", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "CacheInfo", "kind": "class", "doc": "

    CacheInfo(hits, misses, maxsize, currsize)

    \n", "bases": "typing.NamedTuple"}, "bioimageio_collection_backoffice.cache.CacheInfo.__init__": {"fullname": "bioimageio_collection_backoffice.cache.CacheInfo.__init__", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "CacheInfo.__init__", "kind": "function", "doc": "

    Create new instance of CacheInfo(hits, misses, maxsize, currsize)

    \n", "signature": "(hits: int, misses: int, maxsize: int, currsize: int)"}, "bioimageio_collection_backoffice.cache.CacheInfo.hits": {"fullname": "bioimageio_collection_backoffice.cache.CacheInfo.hits", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "CacheInfo.hits", "kind": "variable", "doc": "

    Alias for field number 0

    \n", "annotation": ": int"}, "bioimageio_collection_backoffice.cache.CacheInfo.misses": {"fullname": "bioimageio_collection_backoffice.cache.CacheInfo.misses", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "CacheInfo.misses", "kind": "variable", "doc": "

    Alias for field number 1

    \n", "annotation": ": int"}, "bioimageio_collection_backoffice.cache.CacheInfo.maxsize": {"fullname": "bioimageio_collection_backoffice.cache.CacheInfo.maxsize", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "CacheInfo.maxsize", "kind": "variable", "doc": "

    Alias for field number 2

    \n", "annotation": ": int"}, "bioimageio_collection_backoffice.cache.CacheInfo.currsize": {"fullname": "bioimageio_collection_backoffice.cache.CacheInfo.currsize", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "CacheInfo.currsize", "kind": "variable", "doc": "

    Alias for field number 3

    \n", "annotation": ": int"}, "bioimageio_collection_backoffice.cache.UpdatetableLRU": {"fullname": "bioimageio_collection_backoffice.cache.UpdatetableLRU", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "UpdatetableLRU", "kind": "class", "doc": "

    LRU Cache that allows to pop and update cache entries.

    \n", "bases": "typing.Generic[typing.Unpack[Ks], ~V]"}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.__init__": {"fullname": "bioimageio_collection_backoffice.cache.UpdatetableLRU.__init__", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "UpdatetableLRU.__init__", "kind": "function", "doc": "

    \n", "signature": "(maxsize: int = 128)"}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.maxsize": {"fullname": "bioimageio_collection_backoffice.cache.UpdatetableLRU.maxsize", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "UpdatetableLRU.maxsize", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.cache_info": {"fullname": "bioimageio_collection_backoffice.cache.UpdatetableLRU.cache_info", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "UpdatetableLRU.cache_info", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.update": {"fullname": "bioimageio_collection_backoffice.cache.UpdatetableLRU.update", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "UpdatetableLRU.update", "kind": "function", "doc": "

    update cache (also counts as 'recently used', unless keep_order is True)

    \n", "signature": "(\tself,\tkey: Tuple[Unpack[Ks]],\tvalue: ~V,\tonly_if_cached: bool = True,\tkeep_order: bool = False):", "funcdef": "def"}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.pop": {"fullname": "bioimageio_collection_backoffice.cache.UpdatetableLRU.pop", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "UpdatetableLRU.pop", "kind": "function", "doc": "

    \n", "signature": "(self, key: Tuple[Unpack[Ks]]):", "funcdef": "def"}, "bioimageio_collection_backoffice.cache.SizedValueLRU": {"fullname": "bioimageio_collection_backoffice.cache.SizedValueLRU", "modulename": "bioimageio_collection_backoffice.cache", "qualname": "SizedValueLRU", "kind": "class", "doc": "

    UpdatetableLRU with a limit on the sum of cache entry lengths,\nnot the number of cache entries

    \n", "bases": "bioimageio_collection_backoffice.cache.UpdatetableLRU[typing.Unpack[Ks], ~V_Sized]"}, "bioimageio_collection_backoffice.collection_config": {"fullname": "bioimageio_collection_backoffice.collection_config", "modulename": "bioimageio_collection_backoffice.collection_config", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.collection_template": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.collection_template", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.collection_template", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.id_parts": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.id_parts", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.id_parts", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.id_parts.IdParts"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.reviewers": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.reviewers", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.reviewers", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_config.reviewers.Reviewer]"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.partners": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.partners", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.partners", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.load": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.load", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.load", "kind": "function", "doc": "

    \n", "signature": "(cls):", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_config", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'collection_template': FieldInfo(annotation=CollectionJsonTemplate, required=True), 'id_parts': FieldInfo(annotation=IdParts, required=True), 'reviewers': FieldInfo(annotation=Sequence[Reviewer], required=True)}"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "kind": "module", "doc": "

    a summary of all collection records

    \n"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.background_image": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.background_image", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.background_image", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.default_type": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.default_type", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.default_type", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.explore_button_text": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.explore_button_text", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.explore_button_text", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.icon": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.icon", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.icon", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.id": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.id", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.logo": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.logo", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.logo", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.name": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.name", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.resource_types": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.resource_types", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.resource_types", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.splash_feature_list": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.splash_feature_list", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.splash_feature_list", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.splash_subtitle": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.splash_subtitle", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.splash_subtitle", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.splash_title": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.splash_title", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.splash_title", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'background_image': FieldInfo(annotation=str, required=True), 'default_type': FieldInfo(annotation=str, required=True), 'explore_button_text': FieldInfo(annotation=str, required=True), 'icon': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'id': FieldInfo(annotation=str, required=True), 'logo': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'name': FieldInfo(annotation=str, required=True), 'resource_types': FieldInfo(annotation=Sequence[str], required=True), 'splash_feature_list': FieldInfo(annotation=Sequence[str], required=True), 'splash_subtitle': FieldInfo(annotation=Union[str, NoneType], required=True), 'splash_title': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.background_image": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.background_image", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.background_image", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.default_type": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.default_type", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.default_type", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.explore_button_text": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.explore_button_text", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.explore_button_text", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.partners": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.partners", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.partners", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_config.collection_json_template.Partner]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_feature_list": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_feature_list", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.splash_feature_list", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_subtitle": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_subtitle", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.splash_subtitle", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_title": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_title", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.splash_title", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'background_image': FieldInfo(annotation=str, required=True), 'default_type': FieldInfo(annotation=str, required=True), 'explore_button_text': FieldInfo(annotation=str, required=True), 'partners': FieldInfo(annotation=Sequence[Partner], required=True), 'splash_feature_list': FieldInfo(annotation=Sequence[str], required=True), 'splash_subtitle': FieldInfo(annotation=str, required=True), 'splash_title': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate", "kind": "class", "doc": "

    a summary of all collection records

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.authors": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.authors", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.authors", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio.spec.generic.v0_3.Author]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.cite": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.cite", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.cite", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio.spec.generic.v0_3.CiteEntry]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.config": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.config", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.config", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.description": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.description", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.documentation": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.documentation", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.documentation", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.format_version": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.format_version", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.format_version", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio.spec._internal.version_type.Version"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.git_repo": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.git_repo", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.git_repo", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.icon": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.icon", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.icon", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.license": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.license", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.license", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio.spec._internal.license_id.LicenseId"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.name": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.name", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.tags": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.tags", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.tags", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.type": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.type", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.type", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['collection']"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.version": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.version", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.version", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio.spec._internal.version_type.Version"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'authors': FieldInfo(annotation=Sequence[Author], required=True), 'cite': FieldInfo(annotation=Sequence[CiteEntry], required=True), 'config': FieldInfo(annotation=CollectionWebsiteConfigTemplate, required=True), 'description': FieldInfo(annotation=str, required=True), 'documentation': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'format_version': FieldInfo(annotation=Version, required=True), 'git_repo': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'icon': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'license': FieldInfo(annotation=LicenseId, required=True), 'name': FieldInfo(annotation=str, required=True), 'tags': FieldInfo(annotation=Sequence[str], required=True), 'type': FieldInfo(annotation=Literal['collection'], required=True), 'version': FieldInfo(annotation=Version, required=True)}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.id_parts": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "kind": "module", "doc": "

    describes a file holding all parts to create resource ids

    \n"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry", "kind": "class", "doc": "

    parts to create resource ids for a specific resource type

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.nouns": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.nouns", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.nouns", "kind": "variable", "doc": "

    \n", "annotation": ": Mapping[str, str]"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.adjectives": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.adjectives", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.adjectives", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.get_noun": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.get_noun", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.get_noun", "kind": "function", "doc": "

    \n", "signature": "(self, resource_id: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.validate_concept_id": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.validate_concept_id", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.validate_concept_id", "kind": "function", "doc": "

    \n", "signature": "(self, resource_id: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'nouns': FieldInfo(annotation=Mapping[str, str], required=True), 'adjectives': FieldInfo(annotation=Sequence[str], required=True)}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts", "kind": "class", "doc": "

    parts to create resource ids

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.model", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.dataset": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.dataset", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.dataset", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.notebook": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.notebook", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.notebook", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.get_icon": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.get_icon", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.get_icon", "kind": "function", "doc": "

    \n", "signature": "(self, resource_id: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.select_type": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.select_type", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.select_type", "kind": "function", "doc": "

    \n", "signature": "(\tself,\ttype_: str) -> bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry:", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'model': FieldInfo(annotation=IdPartsEntry, required=True), 'dataset': FieldInfo(annotation=IdPartsEntry, required=True), 'notebook': FieldInfo(annotation=IdPartsEntry, required=True)}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.reviewers": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.id": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.id", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.id", "kind": "variable", "doc": "

    hypha id

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.name": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.name", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.affiliation": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.affiliation", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.affiliation", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.orcid": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.orcid", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.orcid", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.github_user": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.github_user", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.github_user", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.email": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.email", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.email", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'id': FieldInfo(annotation=str, required=True), 'name': FieldInfo(annotation=str, required=True), 'affiliation': FieldInfo(annotation=str, required=True), 'orcid': FieldInfo(annotation=str, required=True), 'github_user': FieldInfo(annotation=str, required=True), 'email': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewers": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewers", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewers", "kind": "variable", "doc": "

    \n", "default_value": "typing.Sequence[bioimageio_collection_backoffice.collection_config.reviewers.Reviewer]"}, "bioimageio_collection_backoffice.collection_json": {"fullname": "bioimageio_collection_backoffice.collection_json", "modulename": "bioimageio_collection_backoffice.collection_json", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.collection_json.Author": {"fullname": "bioimageio_collection_backoffice.collection_json.Author", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.Author.name": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.name", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.Author.affiliation": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.affiliation", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.affiliation", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.Author.email": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.email", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.email", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.Author.orcid": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.orcid", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.orcid", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.Author.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.Author.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'name': FieldInfo(annotation=str, required=True), 'affiliation': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'email': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'orcid': FieldInfo(annotation=Union[str, NoneType], required=False, default=None)}"}, "bioimageio_collection_backoffice.collection_json.Author.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.Badge": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.Badge.icon": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.icon", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.icon", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_json.Badge.label": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.label", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.label", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.Badge.url": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.url", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.url", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_json.Badge.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.Badge.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'icon': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'label': FieldInfo(annotation=str, required=True), 'url': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)])}"}, "bioimageio_collection_backoffice.collection_json.Badge.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.TrainingData": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.TrainingData.id": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData.id", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.TrainingData.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.TrainingData.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'id': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_json.TrainingData.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.authors": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.authors", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.authors", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.Author]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.badges": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.badges", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.badges", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.Badge]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.concept_doi": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.concept_doi", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.concept_doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.covers": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.covers", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.covers", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.created": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.created", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.description": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.description", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.download_count": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.download_count", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.download_count", "kind": "variable", "doc": "

    \n", "annotation": ": Union[Literal['?'], int]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.download_url": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.download_url", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.download_url", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.icon": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.icon", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.icon", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.id": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.id", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.license": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.license", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.license", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.links": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.links", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.links", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.name": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.name", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.nickname_icon": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.nickname_icon", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.nickname_icon", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.nickname": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.nickname", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.nickname", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.rdf_source": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.rdf_source", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.rdf_source", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.root_url": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.root_url", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.root_url", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.tags": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.tags", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.tags", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.training_data": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.training_data", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.training_data", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[bioimageio_collection_backoffice.collection_json.TrainingData]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.type": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.type", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.type", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['application', 'model', 'notebook', 'dataset']"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.source": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.source", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.source", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'authors': FieldInfo(annotation=Sequence[Author], required=True), 'badges': FieldInfo(annotation=Sequence[Badge], required=True), 'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=True), 'covers': FieldInfo(annotation=Sequence[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]], required=True), 'created': FieldInfo(annotation=datetime, required=True), 'description': FieldInfo(annotation=str, required=True), 'download_count': FieldInfo(annotation=Union[Literal['?'], int], required=True), 'download_url': FieldInfo(annotation=Union[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)], NoneType], required=False, default=None), 'icon': FieldInfo(annotation=Union[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)], NoneType], required=False, default=None), 'id': FieldInfo(annotation=str, required=True), 'license': FieldInfo(annotation=Union[str, NoneType], required=True), 'links': FieldInfo(annotation=Sequence[str], required=True), 'name': FieldInfo(annotation=str, required=True), 'nickname_icon': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'nickname': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'rdf_source': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'root_url': FieldInfo(annotation=str, required=True), 'tags': FieldInfo(annotation=Sequence[str], required=False, default=()), 'training_data': FieldInfo(annotation=Union[TrainingData, NoneType], required=False, default=None), 'type': FieldInfo(annotation=Literal['application', 'model', 'notebook', 'dataset'], required=True), 'source': FieldInfo(annotation=Union[str, NoneType], required=False, default=None)}"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.n_resource_versions": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.n_resource_versions", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.n_resource_versions", "kind": "variable", "doc": "

    \n", "annotation": ": Mapping[str, int]"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.resource_types": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.resource_types", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.resource_types", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.n_resources": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.n_resources", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.n_resources", "kind": "variable", "doc": "

    \n", "annotation": ": Mapping[str, int]"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.url_root": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.url_root", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.url_root", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'background_image': FieldInfo(annotation=str, required=True), 'default_type': FieldInfo(annotation=str, required=True), 'explore_button_text': FieldInfo(annotation=str, required=True), 'partners': FieldInfo(annotation=Sequence[Partner], required=True), 'splash_feature_list': FieldInfo(annotation=Sequence[str], required=True), 'splash_subtitle': FieldInfo(annotation=str, required=True), 'splash_title': FieldInfo(annotation=str, required=True), 'n_resource_versions': FieldInfo(annotation=Mapping[str, int], required=True), 'resource_types': FieldInfo(annotation=Sequence[str], required=True), 'n_resources': FieldInfo(annotation=Mapping[str, int], required=True), 'url_root': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)])}"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.CollectionJson": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson", "kind": "class", "doc": "

    a summary of all collection records

    \n", "bases": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.collection": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.collection", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.collection", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.CollectionEntry]"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.config": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.config", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.created": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.created", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'authors': FieldInfo(annotation=Sequence[Author], required=True), 'cite': FieldInfo(annotation=Sequence[CiteEntry], required=True), 'config': FieldInfo(annotation=CollectionWebsiteConfig, required=True), 'description': FieldInfo(annotation=str, required=True), 'documentation': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'format_version': FieldInfo(annotation=Version, required=True), 'git_repo': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'icon': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'license': FieldInfo(annotation=LicenseId, required=True), 'name': FieldInfo(annotation=str, required=True), 'tags': FieldInfo(annotation=Sequence[str], required=True), 'type': FieldInfo(annotation=Literal['collection'], required=True), 'version': FieldInfo(annotation=Version, required=True), 'collection': FieldInfo(annotation=Sequence[CollectionEntry], required=True), 'created': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method)}"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.v": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.v", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.v", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.created": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.created", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.doi": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.doi", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.source": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.source", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.source", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.sha256": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.sha256", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.sha256", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'v': FieldInfo(annotation=str, required=True), 'created': FieldInfo(annotation=datetime, required=True), 'doi': FieldInfo(annotation=Union[str, NoneType], required=True), 'source': FieldInfo(annotation=str, required=True), 'sha256': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.concept": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.concept", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.concept", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.type": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.type", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.type", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.concept_doi": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.concept_doi", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.concept_doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.versions": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.versions", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.versions", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.ConceptVersion]"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'concept': FieldInfo(annotation=str, required=True), 'type': FieldInfo(annotation=str, required=True), 'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=True), 'versions': FieldInfo(annotation=Sequence[ConceptVersion], required=True)}"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.AllVersions": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.AllVersions.entries": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions.entries", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions.entries", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.ConceptSummary]"}, "bioimageio_collection_backoffice.collection_json.AllVersions.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.AllVersions.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'entries': FieldInfo(annotation=Sequence[ConceptSummary], required=True)}"}, "bioimageio_collection_backoffice.collection_json.AllVersions.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.common": {"fullname": "bioimageio_collection_backoffice.common", "modulename": "bioimageio_collection_backoffice.common", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.common.Node": {"fullname": "bioimageio_collection_backoffice.common.Node", "modulename": "bioimageio_collection_backoffice.common", "qualname": "Node", "kind": "class", "doc": "

    \n", "bases": "pydantic.main.BaseModel"}, "bioimageio_collection_backoffice.common.Node.model_config": {"fullname": "bioimageio_collection_backoffice.common.Node.model_config", "modulename": "bioimageio_collection_backoffice.common", "qualname": "Node.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.common.Node.model_fields": {"fullname": "bioimageio_collection_backoffice.common.Node.model_fields", "modulename": "bioimageio_collection_backoffice.common", "qualname": "Node.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.common.Node.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.common.Node.model_computed_fields", "modulename": "bioimageio_collection_backoffice.common", "qualname": "Node.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.conda_env": {"fullname": "bioimageio_collection_backoffice.conda_env", "modulename": "bioimageio_collection_backoffice.conda_env", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.conda_env.yaml": {"fullname": "bioimageio_collection_backoffice.conda_env.yaml", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.conda_env.SupportedWeightsEntry": {"fullname": "bioimageio_collection_backoffice.conda_env.SupportedWeightsEntry", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "SupportedWeightsEntry", "kind": "variable", "doc": "

    \n", "default_value": "typing.Union[bioimageio.spec.model.v0_4.OnnxWeightsDescr, bioimageio.spec.model.v0_4.PytorchStateDictWeightsDescr, bioimageio.spec.model.v0_4.TensorflowSavedModelBundleWeightsDescr, bioimageio.spec.model.v0_4.TorchscriptWeightsDescr, bioimageio.spec.model.v0_5.OnnxWeightsDescr, bioimageio.spec.model.v0_5.PytorchStateDictWeightsDescr, bioimageio.spec.model.v0_5.TensorflowSavedModelBundleWeightsDescr, bioimageio.spec.model.v0_5.TorchscriptWeightsDescr]"}, "bioimageio_collection_backoffice.conda_env.PipDeps": {"fullname": "bioimageio_collection_backoffice.conda_env.PipDeps", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "PipDeps", "kind": "class", "doc": "

    \n", "bases": "typing.TypedDict"}, "bioimageio_collection_backoffice.conda_env.PipDeps.pip": {"fullname": "bioimageio_collection_backoffice.conda_env.PipDeps.pip", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "PipDeps.pip", "kind": "variable", "doc": "

    \n", "annotation": ": List[str]"}, "bioimageio_collection_backoffice.conda_env.CondaEnv": {"fullname": "bioimageio_collection_backoffice.conda_env.CondaEnv", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "CondaEnv", "kind": "class", "doc": "

    \n", "bases": "typing.TypedDict"}, "bioimageio_collection_backoffice.conda_env.CondaEnv.name": {"fullname": "bioimageio_collection_backoffice.conda_env.CondaEnv.name", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "CondaEnv.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.conda_env.CondaEnv.channels": {"fullname": "bioimageio_collection_backoffice.conda_env.CondaEnv.channels", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "CondaEnv.channels", "kind": "variable", "doc": "

    \n", "annotation": ": List[str]"}, "bioimageio_collection_backoffice.conda_env.CondaEnv.dependencies": {"fullname": "bioimageio_collection_backoffice.conda_env.CondaEnv.dependencies", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "CondaEnv.dependencies", "kind": "variable", "doc": "

    \n", "annotation": ": List[Union[str, bioimageio_collection_backoffice.conda_env.PipDeps]]"}, "bioimageio_collection_backoffice.conda_env.get_conda_env": {"fullname": "bioimageio_collection_backoffice.conda_env.get_conda_env", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "get_conda_env", "kind": "function", "doc": "

    \n", "signature": "(\t*,\tentry: Union[bioimageio.spec.model.v0_4.OnnxWeightsDescr, bioimageio.spec.model.v0_4.PytorchStateDictWeightsDescr, bioimageio.spec.model.v0_4.TensorflowSavedModelBundleWeightsDescr, bioimageio.spec.model.v0_4.TorchscriptWeightsDescr, bioimageio.spec.model.v0_5.OnnxWeightsDescr, bioimageio.spec.model.v0_5.PytorchStateDictWeightsDescr, bioimageio.spec.model.v0_5.TensorflowSavedModelBundleWeightsDescr, bioimageio.spec.model.v0_5.TorchscriptWeightsDescr],\tenv_name: str) -> bioimageio_collection_backoffice.conda_env.CondaEnv:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure": {"fullname": "bioimageio_collection_backoffice.db_structure", "modulename": "bioimageio_collection_backoffice.db_structure", "kind": "module", "doc": "

    pydantic models to describe the content of various files\nrelevant for the bioimage.io collection

    \n"}, "bioimageio_collection_backoffice.db_structure.chat": {"fullname": "bioimageio_collection_backoffice.db_structure.chat", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "kind": "module", "doc": "

    <concept_id>/<version>/chat.json keeps a record of version specific comments

    \n"}, "bioimageio_collection_backoffice.db_structure.chat.Message": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.chat.Message.author": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.author", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.author", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.chat.Message.text": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.text", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.text", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.chat.Message.timestamp": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.timestamp", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.timestamp", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.chat.Message.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.chat.Message.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'author': FieldInfo(annotation=str, required=True), 'text': FieldInfo(annotation=str, required=True), 'timestamp': FieldInfo(annotation=datetime, required=False, default=datetime.datetime(2024, 11, 13, 21, 10, 46, 607519))}"}, "bioimageio_collection_backoffice.db_structure.chat.Message.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.chat.Chat": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat", "kind": "class", "doc": "

    <concept_id>/<version>/chat.json keeps a record of version specific comments

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'chat.json'"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.messages": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.messages", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.messages", "kind": "variable", "doc": "

    messages

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.db_structure.chat.Message]"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.chat.Chat) -> bioimageio_collection_backoffice.db_structure.chat.Chat:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'messages': FieldInfo(annotation=Sequence[Message], required=False, default_factory=list)}"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.compatibility": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport", "kind": "class", "doc": "

    Used to report on the compatibility of resource description\nin the bioimageio collection

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.tool", "kind": "variable", "doc": "

    toolname (including version separated by an underscore)

    \n", "annotation": ": Annotated[str, FieldInfo(annotation=NoneType, required=True, exclude=True, metadata=[_PydanticGeneralMetadata(pattern='^[^_]+_[^_]+$')])]"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool_wo_version": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool_wo_version", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.tool_wo_version", "kind": "variable", "doc": "

    assuming a pattern of _

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.status": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.status", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.status", "kind": "variable", "doc": "

    status of this tool for this resource

    \n", "annotation": ": Literal['passed', 'failed', 'not-applicable']"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.error": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.error", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.error", "kind": "variable", "doc": "

    error message if status=='failed'

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.details": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.details", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.details", "kind": "variable", "doc": "

    details to explain the status

    \n", "annotation": ": Any"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.badge": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.badge", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.badge", "kind": "variable", "doc": "

    status badge with a resource specific link to the tool

    \n", "annotation": ": Optional[bioimageio_collection_backoffice.collection_json.Badge]"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.links": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.links", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.links", "kind": "variable", "doc": "

    the checked resource should link these other bioimage.io resources

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'allow', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'tool': FieldInfo(annotation=str, required=True, exclude=True, metadata=[_PydanticGeneralMetadata(pattern='^[^_]+_[^_]+$')]), 'status': FieldInfo(annotation=Literal['passed', 'failed', 'not-applicable'], required=True), 'error': FieldInfo(annotation=Union[str, NoneType], required=True), 'details': FieldInfo(annotation=Any, required=True), 'badge': FieldInfo(annotation=Union[Badge, NoneType], required=False, default=None), 'links': FieldInfo(annotation=Sequence[str], required=False, default=())}"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.error": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.error", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.error", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.name": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.name", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.status": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.status", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.status", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['passed', 'failed']"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.traceback": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.traceback", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.traceback", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Sequence[str]]"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.warnings": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.warnings", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.warnings", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Mapping[str, Any]]"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'error': FieldInfo(annotation=Union[str, NoneType], required=True), 'name': FieldInfo(annotation=str, required=True), 'status': FieldInfo(annotation=Literal['passed', 'failed'], required=True), 'traceback': FieldInfo(annotation=Union[Sequence[str], NoneType], required=True), 'warnings': FieldInfo(annotation=Union[Mapping[str, Any], NoneType], required=True)}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.compatibility.ToolName": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.ToolName", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "ToolName", "kind": "variable", "doc": "

    \n", "default_value": "<class 'str'>"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.status": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.status", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.status", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['passed', 'failed']"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.tests": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.tests", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.tests", "kind": "variable", "doc": "

    \n", "annotation": ": Mapping[str, Sequence[bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry]]"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'status': FieldInfo(annotation=Literal['passed', 'failed'], required=True), 'tests': FieldInfo(annotation=Mapping[str, Sequence[TestSummaryEntry]], required=True)}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.log": {"fullname": "bioimageio_collection_backoffice.db_structure.log", "modulename": "bioimageio_collection_backoffice.db_structure.log", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.message": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.message", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.message", "kind": "variable", "doc": "

    log message

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.details": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.details", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.details", "kind": "variable", "doc": "

    log details

    \n", "annotation": ": Any"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.details_formatted": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.details_formatted", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.details_formatted", "kind": "variable", "doc": "

    log details formatted as markdown

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.timestamp": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.timestamp", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.timestamp", "kind": "variable", "doc": "

    creation of log entry

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.run_url": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.run_url", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.run_url", "kind": "variable", "doc": "

    gh action run url

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'message': FieldInfo(annotation=str, required=False, default=''), 'details': FieldInfo(annotation=Any, required=False, default=None), 'details_formatted': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None)}"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.log.Log": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log", "kind": "class", "doc": "

    <concept_id>/<version>/log.json contains a version specific log

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.log.Log.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'log.json'"}, "bioimageio_collection_backoffice.db_structure.log.Log.log_version": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.log_version", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.log_version", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.log.Log.entries": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.entries", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.entries", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.db_structure.log.LogEntry]"}, "bioimageio_collection_backoffice.db_structure.log.Log.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.log.Log) -> bioimageio_collection_backoffice.db_structure.log.Log:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.log.Log.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.log.Log.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'log_version': FieldInfo(annotation=str, required=False, default='0.1.0'), 'entries': FieldInfo(annotation=Sequence[LogEntry], required=False, default_factory=list)}"}, "bioimageio_collection_backoffice.db_structure.log.Log.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.reserved": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "kind": "module", "doc": "

    <concept_id>/<version>/reserved.json allows to reserve a concept id

    \n"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved", "kind": "class", "doc": "

    <concept_id>/<version>/reserved.json allows to reserve a concept id

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'reserved.json'"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.timestamp": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.timestamp", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.timestamp", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.reserved.Reserved) -> bioimageio_collection_backoffice.db_structure.reserved.Reserved:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method)}"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['unpacking']"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[1]"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=True), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['unpacking'], required=False, default='unpacking'), 'step': FieldInfo(annotation=Literal[1], required=False, default=1)}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['unpacked']"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.description": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.description", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[2]"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=False, default='staging was successful; awaiting automated tests to start \u23f3'), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['unpacked'], required=False, default='unpacked'), 'step': FieldInfo(annotation=Literal[2], required=False, default=2)}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['testing']"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[3]"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=True), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['testing'], required=False, default='testing'), 'step': FieldInfo(annotation=Literal[3], required=False, default=3)}"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['awaiting review']"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.description": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.description", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[4]"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=False, default='Thank you for your contribution! \ud83d\udcaaOur bioimage.io maintainers will take a look soon. \ud83e\udd92'), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['awaiting review'], required=False, default='awaiting review'), 'step': FieldInfo(annotation=Literal[4], required=False, default=4)}"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['changes requested']"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[5]"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=True), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['changes requested'], required=False, default='changes requested'), 'step': FieldInfo(annotation=Literal[5], required=False, default=5)}"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['accepted']"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.description": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.description", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[5]"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=False, default='This staged version has been accepted by a bioimage.io maintainer and is about to be published.'), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['accepted'], required=False, default='accepted'), 'step': FieldInfo(annotation=Literal[5], required=False, default=5)}"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus", "kind": "class", "doc": "

    following AcceptedStatus

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['published']"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.description": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.description", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[6]"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=False, default='published! (this draft will be deleted shortly)'), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['published'], required=False, default='published'), 'step': FieldInfo(annotation=Literal[6], required=False, default=6)}"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftStatus", "kind": "variable", "doc": "

    \n", "default_value": "typing.Annotated[typing.Union[bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus, bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus, bioimageio_collection_backoffice.db_structure.version_info.TestingStatus, bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus, bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus, bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus, bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)]"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus", "kind": "class", "doc": "

    \n", "bases": "_StatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['error']"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[0]"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.message": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.message", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.message", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.traceback": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.traceback", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.traceback", "kind": "variable", "doc": "

    \n", "annotation": ": List[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.during": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.during", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.during", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Annotated[Union[bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus, bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus, bioimageio_collection_backoffice.db_structure.version_info.TestingStatus, bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus, bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus, bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus, bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)]]"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'name': FieldInfo(annotation=Literal['error'], required=False, default='error'), 'step': FieldInfo(annotation=Literal[0], required=False, default=0), 'message': FieldInfo(annotation=str, required=True), 'traceback': FieldInfo(annotation=List[str], required=True), 'during': FieldInfo(annotation=Union[Annotated[Union[UnpackingStatus, UnpackedStatus, TestingStatus, AwaitingReviewStatus, ChangesRequestedStatus, AcceptedStatus, PublishedDraftStatus], Discriminator], NoneType], required=True)}"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo", "kind": "class", "doc": "

    <concept_id>/draft/draft.json contains the collection entry metadata

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'draft.json'"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.status": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.status", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.status", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Annotated[Union[Annotated[Union[bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus, bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus, bioimageio_collection_backoffice.db_structure.version_info.TestingStatus, bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus, bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus, bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus, bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)], bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)]]"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.created": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.created", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.version_info.DraftInfo) -> bioimageio_collection_backoffice.db_structure.version_info.DraftInfo:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'status': FieldInfo(annotation=Union[Annotated[Union[Annotated[Union[UnpackingStatus, UnpackedStatus, TestingStatus, AwaitingReviewStatus, ChangesRequestedStatus, AcceptedStatus, PublishedDraftStatus], Discriminator], ErrorStatus], Discriminator], NoneType], required=False, default=None), 'created': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method)}"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo", "kind": "class", "doc": "

    <concept_id>/info.json contains the collection entry metadata

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'info.json'"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.created": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.created", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.concept_doi": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.concept_doi", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.concept_doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.doi": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.doi", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.doi", "kind": "variable", "doc": "

    version specific DOI

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.download_count": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.download_count", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.download_count", "kind": "variable", "doc": "

    \n", "annotation": ": Union[int, Literal['?']]"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.version_info.RecordInfo) -> bioimageio_collection_backoffice.db_structure.version_info.RecordInfo:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'created': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'doi': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'download_count': FieldInfo(annotation=Union[int, Literal['?']], required=False, default='?')}"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.created": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.created", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.doi": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.doi", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.doi", "kind": "variable", "doc": "

    version specific DOI

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.v": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.v", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.v", "kind": "variable", "doc": "

    version

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'created': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'doi': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'v': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.concept_doi": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.concept_doi", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.concept_doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.versions": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.versions", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.versions", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.db_structure.version_info.VersionInfo]"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'versions': FieldInfo(annotation=Sequence[VersionInfo], required=False, default=())}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.gh_utils": {"fullname": "bioimageio_collection_backoffice.gh_utils", "modulename": "bioimageio_collection_backoffice.gh_utils", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.gh_utils.set_gh_actions_outputs": {"fullname": "bioimageio_collection_backoffice.gh_utils.set_gh_actions_outputs", "modulename": "bioimageio_collection_backoffice.gh_utils", "qualname": "set_gh_actions_outputs", "kind": "function", "doc": "

    \n", "signature": "(**outputs: Union[str, Any]):", "funcdef": "def"}, "bioimageio_collection_backoffice.gh_utils.workflow_dispatch": {"fullname": "bioimageio_collection_backoffice.gh_utils.workflow_dispatch", "modulename": "bioimageio_collection_backoffice.gh_utils", "qualname": "workflow_dispatch", "kind": "function", "doc": "

    \n", "signature": "(workflow_name: str, inputs: Dict[str, Any]):", "funcdef": "def"}, "bioimageio_collection_backoffice.id_map": {"fullname": "bioimageio_collection_backoffice.id_map", "modulename": "bioimageio_collection_backoffice.id_map", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.id_map.IdInfo": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.id_map.IdInfo.source": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.source", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.source", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.id_map.IdInfo.sha256": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.sha256", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.sha256", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.id_map.IdInfo.model_config": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.model_config", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.id_map.IdInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.model_fields", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'source': FieldInfo(annotation=str, required=True), 'sha256': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.id_map.IdInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.id_map.IdMap": {"fullname": "bioimageio_collection_backoffice.id_map.IdMap", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdMap", "kind": "variable", "doc": "

    \n", "default_value": "typing.Mapping[str, bioimageio_collection_backoffice.id_map.IdInfo]"}, "bioimageio_collection_backoffice.mailroom": {"fullname": "bioimageio_collection_backoffice.mailroom", "modulename": "bioimageio_collection_backoffice.mailroom", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.mailroom.constants": {"fullname": "bioimageio_collection_backoffice.mailroom.constants", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.mailroom.constants.BOT_EMAIL": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.BOT_EMAIL", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "BOT_EMAIL", "kind": "variable", "doc": "

    \n", "default_value": "'bioimageiobot@gmail.com'"}, "bioimageio_collection_backoffice.mailroom.constants.IMAP_PORT": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.IMAP_PORT", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "IMAP_PORT", "kind": "variable", "doc": "

    \n", "default_value": "993"}, "bioimageio_collection_backoffice.mailroom.constants.SMTP_PORT": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.SMTP_PORT", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "SMTP_PORT", "kind": "variable", "doc": "

    \n", "default_value": "465"}, "bioimageio_collection_backoffice.mailroom.constants.SMTP_SERVER": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.SMTP_SERVER", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "SMTP_SERVER", "kind": "variable", "doc": "

    \n", "default_value": "'smtp.gmail.com'"}, "bioimageio_collection_backoffice.mailroom.constants.STATUS_UPDATE_SUBJECT": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.STATUS_UPDATE_SUBJECT", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "STATUS_UPDATE_SUBJECT", "kind": "variable", "doc": "

    \n", "default_value": "'bioimage.io status update: '"}, "bioimageio_collection_backoffice.mailroom.constants.REPLY_HINT": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.REPLY_HINT", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "REPLY_HINT", "kind": "variable", "doc": "

    \n", "default_value": "'\\nPlease do not reply to this email.\\n'"}, "bioimageio_collection_backoffice.mailroom.send_email": {"fullname": "bioimageio_collection_backoffice.mailroom.send_email", "modulename": "bioimageio_collection_backoffice.mailroom.send_email", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.mailroom.send_email.notify_uploader": {"fullname": "bioimageio_collection_backoffice.mailroom.send_email.notify_uploader", "modulename": "bioimageio_collection_backoffice.mailroom.send_email", "qualname": "notify_uploader", "kind": "function", "doc": "

    \n", "signature": "(\trv: Union[bioimageio_collection_backoffice.remote_collection.RecordDraft, bioimageio_collection_backoffice.remote_collection.Record],\tsubject_end: str,\tmsg: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.mailroom.send_email.send_email": {"fullname": "bioimageio_collection_backoffice.mailroom.send_email.send_email", "modulename": "bioimageio_collection_backoffice.mailroom.send_email", "qualname": "send_email", "kind": "function", "doc": "

    \n", "signature": "(subject: str, body: str, recipients: List[str]):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_base": {"fullname": "bioimageio_collection_backoffice.remote_base", "modulename": "bioimageio_collection_backoffice.remote_base", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_base.RemoteBase": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase", "kind": "class", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.__init__": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.__init__", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.__init__", "kind": "function", "doc": "

    \n", "signature": "(client: bioimageio_collection_backoffice.s3_client.Client)"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.client": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.client", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.client", "kind": "variable", "doc": "

    Client to connect to remote storage

    \n", "annotation": ": bioimageio_collection_backoffice.s3_client.Client"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.id": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.id", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.folder": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.folder", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.folder", "kind": "variable", "doc": "

    The S3 (sub)prefix of this resource

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.log": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.log", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.log", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.db_structure.log.Log"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.log_message": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.log_message", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.log_message", "kind": "function", "doc": "

    \n", "signature": "(self, message: str, details: Optional[Any] = None):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.log_error": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.log_error", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.log_error", "kind": "function", "doc": "

    \n", "signature": "(self, error: Union[Exception, str], details: Optional[Any] = None):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection": {"fullname": "bioimageio_collection_backoffice.remote_collection", "modulename": "bioimageio_collection_backoffice.remote_collection", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.yaml": {"fullname": "bioimageio_collection_backoffice.remote_collection.yaml", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.remote_collection.LEGACY_DOWNLOAD_COUNTS": {"fullname": "bioimageio_collection_backoffice.remote_collection.LEGACY_DOWNLOAD_COUNTS", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "LEGACY_DOWNLOAD_COUNTS", "kind": "variable", "doc": "

    \n", "default_value": "{'affable-shark': 70601, 'ambitious-ant': 5830, 'ambitious-sloth': 12735, 'amiable-crocodile': 2516, 'chatty-frog': 54555, 'conscientious-seashell': 33362, 'courteous-otter': 4519, 'creative-panda': 35927, 'determined-chipmunk': 18747, 'discreet-rooster': 42990, 'easy-going-sauropod': 12717, 'efficient-chipmunk': 3556, 'emotional-cricket': 36653, 'fearless-crab': 39638, 'hiding-blowfish': 41816, 'hiding-tiger': 45822, 'humorous-owl': 40313, 'impartial-shark': 20822, 'impartial-shrimp': 44942, 'independent-shrimp': 23638, 'joyful-deer': 19265, 'kind-seashell': 40486, 'laid-back-lobster': 25850, 'loyal-parrot': 37100, 'loyal-squid': 30836, 'modest-octopus': 8531, 'naked-microbe': 23086, 'nice-peacock': 13995, 'noisy-fish': 12501, 'noisy-hedgehog': 6793, 'non-judgemental-eagle': 36554, 'organized-badger': 39777, 'organized-cricket': 10156, 'passionate-t-rex': 24267, 'pioneering-rhino': 28176, 'placid-llama': 39063, 'polite-pig': 21235, 'powerful-chipmunk': 35455, 'powerful-fish': 31743, 'shivering-raccoon': 34761, 'straightforward-crocodile': 25477, 'thoughtful-turtle': 25874, 'wild-whale': 29530, 'willing-hedgehog': 37772}"}, "bioimageio_collection_backoffice.remote_collection.LEGACY_VERSIONS": {"fullname": "bioimageio_collection_backoffice.remote_collection.LEGACY_VERSIONS", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "LEGACY_VERSIONS", "kind": "variable", "doc": "

    \n", "default_value": "{'10.5281/zenodo.5764892': ['6647674', '6322939'], '10.5281/zenodo.6338614': ['6338615'], '10.5281/zenodo.5869899': ['6647688', '6321179', '5869900'], '10.5281/zenodo.5874741': ['5874742'], '10.5281/zenodo.5914248': ['8186255', '6514622', '6514446', '5914249'], '10.5281/zenodo.6406756': ['6811922', '6811498', '6406757'], '10.5281/zenodo.5874841': ['6630266', '5874842'], '10.5281/zenodo.5749843': ['5888237'], '10.5281/zenodo.6028097': ['6028098'], '10.5281/zenodo.6348084': ['6348085'], '10.5281/zenodo.7261974': ['7782776', '7778377', '7688940', '7546703', '7261975'], '10.5281/zenodo.6028280': ['6647695', '6028281'], '10.5281/zenodo.6200635': ['7702687', '6538890', '6200636'], '10.5281/zenodo.6346511': ['7768142', '7701413', '6346512'], '10.5281/zenodo.6348728': ['6348729'], '10.5281/zenodo.5817052': ['5906839', '5850574'], '10.5281/zenodo.5847355': ['6647683', '6322908'], '10.5281/zenodo.6406803': ['6406804'], '10.5281/zenodo.6200999': ['7690494', '7678300', '6538911', '6224243'], '10.5281/zenodo.6384845': ['7774490', '7701638', '6384846'], '10.5281/zenodo.6383429': ['7774505', '7701632', '6383430'], '10.5281/zenodo.6079314': ['7695872', '7689587', '7688686', '6385590', '6079315'], '10.5281/zenodo.6334383': ['7805067', '7701262', '7697068', '6346500', '6334384'], '10.5281/zenodo.6334881': ['7805026', '7701241', '7696907', '6346477', '6334882'], '10.5281/zenodo.6334777': ['7765026', '7701561', '7696952', '6346524', '6334778'], '10.5281/zenodo.5910854': ['6539073', '5911832'], '10.5281/zenodo.6334583': ['7805434', '7768223', '7701492', '7696919', '6346519', '6334584'], '10.5281/zenodo.6811491': ['6811492'], '10.5281/zenodo.6559474': ['6559475'], '10.5281/zenodo.5910163': ['5942853'], '10.5281/zenodo.6865412': ['6919253'], '10.5281/zenodo.7274275': ['8123818', '7274276'], '10.5281/zenodo.6808325': ['6808413'], '10.5281/zenodo.7315440': ['7315441'], '10.5281/zenodo.7380171': ['7405349'], '10.5281/zenodo.7614645': ['7642674'], '10.5281/zenodo.7772662': ['7781091'], '10.5281/zenodo.7786492': ['7786493'], '10.5281/zenodo.8421755': ['8432366'], '10.5281/zenodo.8064806': ['8073617'], '10.5281/zenodo.6559929': ['6559930'], '10.5281/zenodo.8419845': ['8420081'], '10.5281/zenodo.8420099': ['8420100'], '10.5281/zenodo.8401064': ['8429203', '8401065'], '10.5281/zenodo.8142283': ['8171247'], '10.5281/zenodo.7612115': ['7612152']}"}, "bioimageio_collection_backoffice.remote_collection.P": {"fullname": "bioimageio_collection_backoffice.remote_collection.P", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "P", "kind": "variable", "doc": "

    \n", "default_value": "~P"}, "bioimageio_collection_backoffice.remote_collection.log": {"fullname": "bioimageio_collection_backoffice.remote_collection.log", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "log", "kind": "function", "doc": "

    method decorator to indicate that a method execution should be logged

    \n", "signature": "(\tfunc: Callable[Concatenate[~R, ~P], ~T]) -> Callable[Concatenate[~R, ~P], ~T]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.reviewer_role": {"fullname": "bioimageio_collection_backoffice.remote_collection.reviewer_role", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "reviewer_role", "kind": "function", "doc": "

    method decorator to indicate that a method may only be called by a bioimage.io reviewer

    \n", "signature": "(\tfunc: Callable[Concatenate[~R, str, ~P], ~T]) -> Callable[Concatenate[~R, str, ~P], ~T]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.lock_concept": {"fullname": "bioimageio_collection_backoffice.remote_collection.lock_concept", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "lock_concept", "kind": "function", "doc": "

    method decorator to indicate that a method may only be called by a bioimage.io reviewer

    \n", "signature": "(\tfunc: Callable[Concatenate[~R, ~P], ~T]) -> Callable[Concatenate[~R, ~P], ~T]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.lock_version": {"fullname": "bioimageio_collection_backoffice.remote_collection.lock_version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "lock_version", "kind": "function", "doc": "

    method decorator to indicate that a method may only be called by a bioimage.io reviewer

    \n", "signature": "(\tfunc: Callable[Concatenate[~R, ~P], ~T]) -> Callable[Concatenate[~R, ~P], ~T]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection", "kind": "class", "doc": "

    A representation of a (the) bioimage.io collection

    \n", "bases": "bioimageio_collection_backoffice.remote_base.RemoteBase"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.__init__", "kind": "function", "doc": "

    \n", "signature": "(client: bioimageio_collection_backoffice.s3_client.Client)"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.client": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.client", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.client", "kind": "variable", "doc": "

    Client to connect to remote storage

    \n", "annotation": ": bioimageio_collection_backoffice.s3_client.Client"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.folder": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.folder", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.folder", "kind": "variable", "doc": "

    collection folder is given by the client prefix

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.url": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.url", "kind": "variable", "doc": "

    collection.json url

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.config": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.config", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.config", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.CollectionConfig"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.partner_ids": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.partner_ids", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.partner_ids", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_concepts": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_concepts", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_concepts", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.validate_concept_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.validate_concept_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.validate_concept_id", "kind": "function", "doc": "

    check if a concept id follows the defined pattern (not if it exists)

    \n", "signature": "(self, concept_id: str, *, type_: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_concpet_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_concpet_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.generate_concpet_id", "kind": "function", "doc": "

    generate a new, unused concept id

    \n", "signature": "(self, type_: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.reserve_concept_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.reserve_concept_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.reserve_concept_id", "kind": "function", "doc": "

    \n", "signature": "(self, concept_id: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_taken_concept_ids": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_taken_concept_ids", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_taken_concept_ids", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_drafts": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_drafts", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_drafts", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_published_versions": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_published_versions", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_published_versions", "kind": "function", "doc": "

    \n", "signature": "(self) -> List[bioimageio_collection_backoffice.remote_collection.Record]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_collection_json": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_collection_json", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.generate_collection_json", "kind": "function", "doc": "

    generate a json file with an overview of all published resources\n(also generates versions.json files for each research concept)

    \n", "signature": "(self, mode: Literal['published', 'draft'] = 'published') -> None:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_collection_json": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_collection_json", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_collection_json", "kind": "function", "doc": "

    \n", "signature": "(self) -> bioimageio_collection_backoffice.collection_json.CollectionJson:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept", "kind": "class", "doc": "

    A representation of a bioimage.io resource\n(not a specific staged or published version of it)

    \n", "bases": "bioimageio_collection_backoffice.remote_base.RemoteBase"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.__init__", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str)"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.collection": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.collection", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.collection", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.remote_collection.RemoteCollection"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.concept_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.concept_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.concept_id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.id", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.draft", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.remote_collection.RecordDraft"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.get_published_versions": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.get_published_versions", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.get_published_versions", "kind": "function", "doc": "

    Get representations of the published version

    \n", "signature": "(self) -> List[bioimageio_collection_backoffice.remote_collection.Record]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft_new_version": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft_new_version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.draft_new_version", "kind": "function", "doc": "

    Stage the content at package_url as a new resource version candidate.

    \n", "signature": "(\tself,\tpackage_url: str) -> bioimageio_collection_backoffice.remote_collection.RecordDraft:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.doi", "kind": "variable", "doc": "

    (version unspecific) Zenodo concept DOI of the\nlatest published version of this resource concept

    \n"}, "bioimageio_collection_backoffice.remote_collection.Uploader": {"fullname": "bioimageio_collection_backoffice.remote_collection.Uploader", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Uploader", "kind": "class", "doc": "

    Uploader(email, name)

    \n", "bases": "typing.NamedTuple"}, "bioimageio_collection_backoffice.remote_collection.Uploader.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.Uploader.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Uploader.__init__", "kind": "function", "doc": "

    Create new instance of Uploader(email, name)

    \n", "signature": "(email: ForwardRef('Optional[str]'), name: str)"}, "bioimageio_collection_backoffice.remote_collection.Uploader.email": {"fullname": "bioimageio_collection_backoffice.remote_collection.Uploader.email", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Uploader.email", "kind": "variable", "doc": "

    Alias for field number 0

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.remote_collection.Uploader.name": {"fullname": "bioimageio_collection_backoffice.remote_collection.Uploader.name", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Uploader.name", "kind": "variable", "doc": "

    Alias for field number 1

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordBase": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase", "kind": "class", "doc": "

    Base class for a RecordDraft and Record

    \n", "bases": "bioimageio_collection_backoffice.remote_base.RemoteBase, abc.ABC"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.__init__", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str)"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.concept_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.concept_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.concept_id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.concept": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.concept", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.concept", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.remote_collection.RecordConcept"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.collection": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.collection", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.collection", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.exists": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.exists", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.exists", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_path": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_path", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.rdf_path", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_rdf": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_rdf", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_rdf", "kind": "function", "doc": "

    \n", "signature": "(self) -> Dict[str, Any]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_url": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.rdf_url", "kind": "variable", "doc": "

    rdf.yaml download URL

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.chat": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.chat", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.chat", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.db_structure.chat.Chat"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.add_log_entry": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.add_log_entry", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.add_log_entry", "kind": "function", "doc": "

    add a log entry

    \n", "signature": "(\tself,\tlog_entry: bioimageio_collection_backoffice.db_structure.log.LogEntry):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.extend_log": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.extend_log", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.extend_log", "kind": "function", "doc": "

    extend log file

    \n", "signature": "(\tself,\textension: bioimageio_collection_backoffice.db_structure.log.Log):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.extend_chat": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.extend_chat", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.extend_chat", "kind": "function", "doc": "

    extend chat file

    \n", "signature": "(\tself,\textension: bioimageio_collection_backoffice.db_structure.chat.Chat):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_uploader": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_uploader", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_uploader", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_url": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_file_url", "kind": "function", "doc": "

    \n", "signature": "(self, path: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_urls": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_urls", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_file_urls", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_paths": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_paths", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_file_paths", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_all_compatibility_reports": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_all_compatibility_reports", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_all_compatibility_reports", "kind": "function", "doc": "

    get all compatibility reports

    \n", "signature": "(self, tool: Optional[str] = None):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_compatibility_report_path": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_compatibility_report_path", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_compatibility_report_path", "kind": "function", "doc": "

    \n", "signature": "(self, tool: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.set_compatibility_report": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.set_compatibility_report", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.set_compatibility_report", "kind": "function", "doc": "

    \n", "signature": "(\tself,\treport: bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport) -> None:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft", "kind": "class", "doc": "

    A staged resource version

    \n", "bases": "RecordBase"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.__init__", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str)"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.version": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.version", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'draft'"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.doi", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[NoneType]", "default_value": "None"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.folder": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.folder", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.folder", "kind": "variable", "doc": "

    The S3 (sub)prefix of this version\n(sub)prefix, because the client may prefix this prefix

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.info": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.info", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.info", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.db_structure.version_info.DraftInfo"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.update_info": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.update_info", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.update_info", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.version_info.DraftInfo):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.bioimageio_url": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.bioimageio_url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.bioimageio_url", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.concept_doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.concept_doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.concept_doi", "kind": "variable", "doc": "

    concept DOI of Zenodo record

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.unpack": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.unpack", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.unpack", "kind": "function", "doc": "

    \n", "signature": "(self, package_url: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.set_testing_status": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.set_testing_status", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.set_testing_status", "kind": "function", "doc": "

    \n", "signature": "(self, description: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.await_review": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.await_review", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.await_review", "kind": "function", "doc": "

    set status to 'awaiting review'

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.request_changes": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.request_changes", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.request_changes", "kind": "function", "doc": "

    \n", "signature": "(self, reviewer: str, reason: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.publish": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.publish", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.publish", "kind": "function", "doc": "

    mark this staged version candidate as accepted and try to publish it

    \n", "signature": "(\tself,\treviewer: str) -> bioimageio_collection_backoffice.remote_collection.Record:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.Record": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record", "kind": "class", "doc": "

    A representation of a published resource version

    \n", "bases": "RecordBase"}, "bioimageio_collection_backoffice.remote_collection.Record.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.__init__", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str,\tversion: str)"}, "bioimageio_collection_backoffice.remote_collection.Record.version": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.version", "kind": "variable", "doc": "

    a (semantic) version string

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.Record.id": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.Record.doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.doi", "kind": "variable", "doc": "

    version specific DOI of Zenodo record

    \n"}, "bioimageio_collection_backoffice.remote_collection.Record.concept_doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.concept_doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.concept_doi", "kind": "variable", "doc": "

    concept DOI of Zenodo record

    \n"}, "bioimageio_collection_backoffice.remote_collection.Record.bioimageio_url": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.bioimageio_url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.bioimageio_url", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.Record.info": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.info", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.info", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.db_structure.version_info.RecordInfo"}, "bioimageio_collection_backoffice.remote_collection.Record.update_info": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.update_info", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.update_info", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.version_info.RecordInfo):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.Record.set_dois": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.set_dois", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.set_dois", "kind": "function", "doc": "

    \n", "signature": "(self, *, doi: str, concept_doi: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.get_remote_resource_version": {"fullname": "bioimageio_collection_backoffice.remote_collection.get_remote_resource_version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "get_remote_resource_version", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str,\tversion: Union[int, float, str]):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.maybe_swap_with_thumbnail": {"fullname": "bioimageio_collection_backoffice.remote_collection.maybe_swap_with_thumbnail", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "maybe_swap_with_thumbnail", "kind": "function", "doc": "

    \n", "signature": "(\tsrc: Union[Any, Dict[Any, Any], List[Any]],\tthumbnails: Mapping[str, str]) -> Any:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.resolve_relative_path": {"fullname": "bioimageio_collection_backoffice.remote_collection.resolve_relative_path", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "resolve_relative_path", "kind": "function", "doc": "

    \n", "signature": "(\tsrc: Union[Any, Dict[Any, Any], List[Any]],\tparsed_root: urllib.parse.SplitResult) -> Any:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.create_collection_entries": {"fullname": "bioimageio_collection_backoffice.remote_collection.create_collection_entries", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "create_collection_entries", "kind": "function", "doc": "

    create collection entries from a single (draft) record

    \n", "signature": "(\tversions: Sequence[Union[bioimageio_collection_backoffice.remote_collection.Record, bioimageio_collection_backoffice.remote_collection.RecordDraft]]) -> Tuple[List[bioimageio_collection_backoffice.collection_json.CollectionEntry], Mapping[str, bioimageio_collection_backoffice.id_map.IdInfo]]:", "funcdef": "def"}, "bioimageio_collection_backoffice.requests_utils": {"fullname": "bioimageio_collection_backoffice.requests_utils", "modulename": "bioimageio_collection_backoffice.requests_utils", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.requests_utils.raise_for_status_discretely": {"fullname": "bioimageio_collection_backoffice.requests_utils.raise_for_status_discretely", "modulename": "bioimageio_collection_backoffice.requests_utils", "qualname": "raise_for_status_discretely", "kind": "function", "doc": "

    Raises HTTPError, if one occurred,\nbut removes query from url to avoid leaking access tokens, etc.

    \n\n

    adapted from requests.Response.raise_for_status

    \n", "signature": "(response: requests.models.Response):", "funcdef": "def"}, "bioimageio_collection_backoffice.requests_utils.put_file_from_url": {"fullname": "bioimageio_collection_backoffice.requests_utils.put_file_from_url", "modulename": "bioimageio_collection_backoffice.requests_utils", "qualname": "put_file_from_url", "kind": "function", "doc": "

    Gets a remote file and pushes it up to a destination

    \n", "signature": "(file_url: str, destination_url: str, params: Dict[str, Any]) -> None:", "funcdef": "def"}, "bioimageio_collection_backoffice.requests_utils.put_file": {"fullname": "bioimageio_collection_backoffice.requests_utils.put_file", "modulename": "bioimageio_collection_backoffice.requests_utils", "qualname": "put_file", "kind": "function", "doc": "

    \n", "signature": "(file_object: _io.BytesIO, url: str, params: Dict[str, Any]):", "funcdef": "def"}, "bioimageio_collection_backoffice.run_dynamic_tests": {"fullname": "bioimageio_collection_backoffice.run_dynamic_tests", "modulename": "bioimageio_collection_backoffice.run_dynamic_tests", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.run_dynamic_tests.yaml": {"fullname": "bioimageio_collection_backoffice.run_dynamic_tests.yaml", "modulename": "bioimageio_collection_backoffice.run_dynamic_tests", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.run_dynamic_tests.get_summary_detail_from_exception": {"fullname": "bioimageio_collection_backoffice.run_dynamic_tests.get_summary_detail_from_exception", "modulename": "bioimageio_collection_backoffice.run_dynamic_tests", "qualname": "get_summary_detail_from_exception", "kind": "function", "doc": "

    \n", "signature": "(name: str, exception: Exception):", "funcdef": "def"}, "bioimageio_collection_backoffice.run_dynamic_tests.run_dynamic_tests": {"fullname": "bioimageio_collection_backoffice.run_dynamic_tests.run_dynamic_tests", "modulename": "bioimageio_collection_backoffice.run_dynamic_tests", "qualname": "run_dynamic_tests", "kind": "function", "doc": "

    \n", "signature": "(\trecord: Union[bioimageio_collection_backoffice.remote_collection.Record, bioimageio_collection_backoffice.remote_collection.RecordDraft],\tweight_format: Optional[Literal['keras_hdf5', 'onnx', 'pytorch_state_dict', 'tensorflow_js', 'tensorflow_saved_model_bundle', 'torchscript']],\tcreate_env_outcome: str,\tconda_env_file: pathlib.Path):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client": {"fullname": "bioimageio_collection_backoffice.s3_client", "modulename": "bioimageio_collection_backoffice.s3_client", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.s3_client.yaml": {"fullname": "bioimageio_collection_backoffice.s3_client.yaml", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.s3_client.Client": {"fullname": "bioimageio_collection_backoffice.s3_client.Client", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client", "kind": "class", "doc": "

    Convenience wrapper around a Minio S3 client

    \n"}, "bioimageio_collection_backoffice.s3_client.Client.__init__": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.__init__", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.__init__", "kind": "function", "doc": "

    \n", "signature": "(\thost: str = 'uk1s3.embassy.ebi.ac.uk',\tbucket: str = 'public-datasets',\tprefix: str = 'testing.bioimage.io/runner/instance',\taccess_key: pydantic.types.SecretStr = SecretStr(''),\tsecret_key: pydantic.types.SecretStr = SecretStr(''),\tmax_bytes_cached: int = 1000000000)"}, "bioimageio_collection_backoffice.s3_client.Client.host": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.host", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.host", "kind": "variable", "doc": "

    S3 host

    \n", "annotation": ": str", "default_value": "'uk1s3.embassy.ebi.ac.uk'"}, "bioimageio_collection_backoffice.s3_client.Client.bucket": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.bucket", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.bucket", "kind": "variable", "doc": "

    S3 bucket

    \n", "annotation": ": str", "default_value": "'public-datasets'"}, "bioimageio_collection_backoffice.s3_client.Client.prefix": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.prefix", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.prefix", "kind": "variable", "doc": "

    S3 prefix ('root folder')

    \n", "annotation": ": str", "default_value": "'testing.bioimage.io/runner/instance'"}, "bioimageio_collection_backoffice.s3_client.Client.access_key": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.access_key", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.access_key", "kind": "variable", "doc": "

    S3 access key

    \n", "annotation": ": pydantic.types.SecretStr", "default_value": "SecretStr('')"}, "bioimageio_collection_backoffice.s3_client.Client.secret_key": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.secret_key", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.secret_key", "kind": "variable", "doc": "

    S3 secret key

    \n", "annotation": ": pydantic.types.SecretStr", "default_value": "SecretStr('')"}, "bioimageio_collection_backoffice.s3_client.Client.max_bytes_cached": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.max_bytes_cached", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.max_bytes_cached", "kind": "variable", "doc": "

    \n", "annotation": ": int", "default_value": "1000000000"}, "bioimageio_collection_backoffice.s3_client.Client.put_and_cache": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_and_cache", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_and_cache", "kind": "function", "doc": "

    \n", "signature": "(self, path: str, file: bytes):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put", "kind": "function", "doc": "

    upload a file(like object)

    \n", "signature": "(\tself,\tpath: str,\tfile_object: Union[_io.BytesIO, BinaryIO],\tlength: Optional[int]) -> None:", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put_pydantic": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_pydantic", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_pydantic", "kind": "function", "doc": "

    upload a json file from a pydantic model

    \n", "signature": "(self, path: str, obj: pydantic.main.BaseModel):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put_json": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_json", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_json", "kind": "function", "doc": "

    upload a json file from a json serializable value

    \n", "signature": "(self, path: str, json_value: Any):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put_yaml": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_yaml", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_yaml", "kind": "function", "doc": "

    upload a yaml file from a yaml serializable value

    \n", "signature": "(self, yaml_value: Any, path: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put_json_string": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_json_string", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_json_string", "kind": "function", "doc": "

    \n", "signature": "(self, path: str, json_str: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.get_file_urls": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.get_file_urls", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.get_file_urls", "kind": "function", "doc": "

    Checks an S3 'folder' for its list of files

    \n", "signature": "(self, path: str = '') -> List[str]:", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.ls": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.ls", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.ls", "kind": "function", "doc": "

    List folder contents, non-recursive, ala ls but no \".\" or \"..\"

    \n", "signature": "(\tself,\tpath: str,\tonly_folders: bool = False,\tonly_files: bool = False) -> Iterator[str]:", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.cp_dir": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.cp_dir", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.cp_dir", "kind": "function", "doc": "

    \n", "signature": "(self, src: str, tgt: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.mv_dir": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.mv_dir", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.mv_dir", "kind": "function", "doc": "

    copy and delete all objects under src to tgt

    \n", "signature": "(self, src: str, tgt: str, *, bypass_governance_mode: bool = False):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.rm_dir": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.rm_dir", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.rm_dir", "kind": "function", "doc": "

    remove all objects under prefix

    \n", "signature": "(self, prefix: str, *, bypass_governance_mode: bool = False):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.rm": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.rm", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.rm", "kind": "function", "doc": "

    \n", "signature": "(self, object: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.load_file": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.load_file", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.load_file", "kind": "function", "doc": "

    Load file

    \n\n
    Returns:
    \n\n
    \n

    file content or None if no object at path was found.

    \n
    \n", "signature": "(self, path: str, /) -> Optional[bytes]:", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.get_file_url": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.get_file_url", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.get_file_url", "kind": "function", "doc": "

    Get the full URL to path

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"bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_config": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_fields": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_config": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_fields": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_config": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_fields": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_config": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_fields": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_config": {"tf": 1}, 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1.4142135623730951}, "bioimageio_collection_backoffice.s3_client.Client.put_pydantic": {"tf": 1}, "bioimageio_collection_backoffice.s3_client.Client.put_json": {"tf": 1.4142135623730951}}, "df": 12}}}}, "g": {"docs": {"bioimageio_collection_backoffice": {"tf": 1.4142135623730951}}, "df": 1, "i": {"docs": {}, "df": 0, "t": {"docs": {}, "df": 0, "h": {"docs": {}, "df": 0, "u": {"docs": {}, "df": 0, "b": {"docs": {"bioimageio_collection_backoffice": {"tf": 2.8284271247461903}}, "df": 1}}}}, "v": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "n": {"docs": {"bioimageio_collection_backoffice": {"tf": 1.7320508075688772}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.folder": {"tf": 1}}, "df": 2}}}}, "t": {"docs": {"bioimageio_collection_backoffice": {"tf": 2.6457513110645907}, "bioimageio_collection_backoffice.db_structure.chat": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.chat.Chat": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.log.Log": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.reserved": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo": {"tf": 1}}, "df": 8}, "o": {"docs": {"bioimageio_collection_backoffice": {"tf": 1.4142135623730951}}, "df": 1}, "r": {"docs": {}, "df": 0, "a": {"docs": {}, "df": 0, "p": {"docs": {}, "df": 0, "h": {"docs": {"bioimageio_collection_backoffice": {"tf": 1}}, "df": 1}}}}, "e": {"docs": {}, "df": 0, "t": {"docs": {"bioimageio_collection_backoffice.remote_collection.RecordConcept.get_published_versions": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_all_compatibility_reports": {"tf": 1}, 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{"bioimageio_collection_backoffice.db_structure.log.LogEntry.run_url": {"tf": 1}}, "df": 1}}, "v": {"1": {"docs": {"bioimageio_collection_backoffice.collection_config.CollectionConfig.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.Author.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.Badge.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.TrainingData.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.CollectionJson.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.collection_json.AllVersions.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.common.Node.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.chat.Message.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.chat.Chat.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.log.Log.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_fields": {"tf": 1}, "bioimageio_collection_backoffice.id_map.IdInfo.model_fields": {"tf": 1}}, "df": 38}, "docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "r": {"docs": {}, "df": 0, "s": {"docs": {}, "df": 0, "i": {"docs": {}, "df": 0, "o": {"docs": {}, "df": 0, "n": {"docs": {"bioimageio_collection_backoffice": {"tf": 2}, "bioimageio_collection_backoffice.db_structure.chat": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.chat.Chat": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.log.Log": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.db_structure.reserved": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.doi": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.doi": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.v": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordConcept": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.get_published_versions": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft_new_version": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.doi": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.remote_collection.RecordDraft": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.folder": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.publish": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.Record": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.Record.version": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.Record.doi": {"tf": 1}}, "df": 20, "s": {"docs": {"bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_collection_json": {"tf": 1}}, "df": 1}}}}}}}, "i": {"docs": {}, "df": 0, "a": {"docs": {"bioimageio_collection_backoffice": 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{"bioimageio_collection_backoffice": {"tf": 1}}, "df": 1}}}}}, "e": {"docs": {}, "df": 0, "n": {"docs": {}, "df": 0, "o": {"docs": {}, "df": 0, "d": {"docs": {}, "df": 0, "o": {"docs": {"bioimageio_collection_backoffice": {"tf": 1.4142135623730951}, "bioimageio_collection_backoffice.backup.backup": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.doi": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.concept_doi": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.Record.doi": {"tf": 1}, "bioimageio_collection_backoffice.remote_collection.Record.concept_doi": {"tf": 1}}, "df": 6}}}}}}, "y": {"docs": {}, "df": 0, "a": {"docs": {}, "df": 0, "m": {"docs": {}, "df": 0, "l": {"docs": {"bioimageio_collection_backoffice": {"tf": 2}, "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_url": {"tf": 1}, "bioimageio_collection_backoffice.s3_client.Client.put_yaml": {"tf": 1.4142135623730951}}, "df": 3}}}, "o": {"docs": {}, "df": 0, "u": {"docs": {"bioimageio_collection_backoffice": {"tf": 1.7320508075688772}}, "df": 1, "r": {"docs": {}, "df": 0, "s": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "l": {"docs": {}, "df": 0, "f": {"docs": {"bioimageio_collection_backoffice": {"tf": 1}}, "df": 1}}}}}}}, "e": {"docs": {}, "df": 0, "t": {"docs": {"bioimageio_collection_backoffice.backup.SkipForNow": {"tf": 1}}, "df": 1}}}, "k": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "p": {"docs": {"bioimageio_collection_backoffice": {"tf": 1}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.update": {"tf": 1}}, "df": 2, "s": {"docs": {"bioimageio_collection_backoffice.db_structure.chat": {"tf": 1}, "bioimageio_collection_backoffice.db_structure.chat.Chat": {"tf": 1}}, "df": 2}}}, "y": {"docs": {"bioimageio_collection_backoffice.s3_client.Client.access_key": {"tf": 1}, "bioimageio_collection_backoffice.s3_client.Client.secret_key": {"tf": 1}}, "df": 2}}}, "q": {"docs": {}, "df": 0, "u": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "r": {"docs": {}, "df": 0, "y": {"docs": {"bioimageio_collection_backoffice.requests_utils.raise_for_status_discretely": {"tf": 1}}, "df": 1}}}}}}}}, "pipeline": ["trimmer"], "_isPrebuiltIndex": true}; + /** pdoc search index */const docs = {"version": "0.9.5", "fields": ["qualname", "fullname", "annotation", "default_value", "signature", "bases", "doc"], "ref": "fullname", "documentStore": {"docs": {"bioimageio_collection_backoffice": {"fullname": "bioimageio_collection_backoffice", "modulename": "bioimageio_collection_backoffice", "kind": "module", "doc": "

    \"internal\n\"collection\n\"backup

    \n\n

    \"last\n\"last\n\"last

    \n\n

    \"ilastik

    \n\n

    \"code

    \n\n

    collection

    \n\n

    This repository is used to manage the resources displayed on bioimage.io.

    \n\n

    Most users will not directly dispatch the workflows defined in this reporitory, but should instead login on bioimage.io and use the front-end to interact with the bioimage.io collection.

    \n\n

    We currently do not have a workflow for direct upload, but publicly available resource packages may be staged with a stage workflow dispatch.

    \n\n

    Maintaining the bioimage.io Collection

    \n\n

    In order to update or add new resources to the bioimage.io collection, they have to undergo review.\nCurrent reviewers are listed in bioimageio_collection_config.json, under section reviewers.

    \n\n

    Reviewer Onboarding

    \n\n
      \n
    1. Open a pull request, adding a person to the list of reviewers, see https://github.com/bioimage-io/collection/pull/75 for an example.\n
        \n
      • one public email address is required
      • \n
      • github id can be found using https://api.github.com/users/<github_username>
      • \n
    2. \n
    3. So the changes can be applied, the service needs to be restored manually. Reach out to the team or leave an issue.
    4. \n
    5. Once the pull request has been merged, the new reviewer can\n
        \n
      • accept resource drafts
      • \n
      • request changes on resource drafts
      • \n
      • upload a new version for any resource
      • \n
    6. \n
    \n\n

    Adding a bioimage.io resource

    \n\n

    A bioimage.io resource is created by a user uploading a _resource package_.\nSuch a _resource package_ could e.g. be a newly uploaded _model package_, or _notebook package_.\nTypically, uploaders would go via bioimage.io/upload.\nAlternatively, any direct link to a downloadable resource package (.zip-file) would work.\nThe latter option is reserved for members of this repository (or the bioimageio org).\nOnce available online the _resource package_ is staged (see Staging section), tested (see Testing section), and reviewed (see Review section).

    \n\n
    graph TD;\n stage[stage]\n test[test]\n cr[request changes]\n publish[accept/publish]\n backup[backup to Zenodo]\n\n stage-->test\n test-->cr\n cr-->stage\n test-->publish\n publish-->backup\n
    \n\n

    Staging

    \n\n

    If the _resource package_ was uploaded via the bioimage.io website, the staging of the new resource draft is initiated automatically by the uploader service.\nOtherwise, given a download URL to a _resource package_, the stage workflow needs to be dispatched manually, or via github api (\"run workflow\")1.

    \n\n

    Staging unpacks the files from the zipped resource package to our public S3.\nOnce unpacked, the staged _resource draft_ is automatically tested (the test workflow is dispatched automatically at the end of the stage workflow).

    \n\n

    Testing

    \n\n

    Staged resource drafts are automatically tested:

    \n\n
      \n
    • Is their metadata valid?
    • \n
    • Can test outputs be reproduced from test inputs?
    • \n
    • Are linked URLs available?
    • \n
    • ...
    • \n
    \n\n

    Tests can also be triggered (via github api or manually) by dispatching the test workflow2.

    \n\n

    Once the tests are completed, the uploader gets a notification via email that their draft is awaiting review; now a reviewer needs to take a look.

    \n\n

    An overview of all pending _resource drafts_ can be found at https://bioimageio-uploader.netlify.app/#/status.\nA _draft_ is identified by its concept id (id from the rdf.yaml).

    \n\n

    Review

    \n\n

    Reviewers should check the models for technical correctness (aided by CI, see Testing section) and contents/metadata of the resource.

    \n\n

    To this end it can be helpful to check the logs displayed at https://bioimageio-uploader.netlify.app/#/status/<concept_id>.\nThere information about automated workflow steps and validation outcome is logged.\nAdditionally an 'error' status may be shown if an exception occured in the GitHub workflow run producing the log.\nTo be able to see all the packaged models along with the 'rdf.yaml' as well as covers and other documentation, go to the draft collection and download the model from there.

    \n\n

    For models, reviewers can use the model documentation as a guide.

    \n\n

    Reviewers can:

    \n\n
      \n
    • _request changes_:\nA contributor is expected to upload an updated (fixed) draft (which overwrites the current draft).\nThis can be done either by the website, or the stage workflow.\nImportant is to keep the id the same.
    • \n
    • _apply minor changes_:\nFor minor changes it is often not necessary to involve the contributor directly.\nSuch changes could be e.g. obvious typos in some of the fields.\nReviewers can apply changes locally to the _resource package_ and re-upload (using the same id), or, given S3 credentials, files could also be changed in place.\nLatter way of changing requires manually triggering the tests (see Testing section).
    • \n
    • _accept_:\nAccepting the _resource draft_ via the web interface triggers the publish workflow, which creates a new unique _resource version_.\nAs a result, the resource is published, the draft deleted and, thus, the _resource_ is available via the bioimage.io website.\nThe backup workflow will upload/publish the _resource version_ to zenodo using the bioimage.io bot account (tagged with backup.bioimage.io).
    • \n
    \n\n

    Add community partner

    \n\n

    To link yourself as a community partner, please create a PR to insert relevant metadata into bioimageio_collection_config.json under \"partners\".\nCheckout ilastik partner entry for an example.

    \n\n

    Add community partner compatibility checks

    \n\n

    Any community partner is invited to add a GitHub Actions workflow in this repo (please make a PR) that generates reports on its software compatibility with new and updated resources in the bioimage.io collection.\nSee ilastik compatibility checks workflow for an example.

    \n\n

    If you are not familiar with GitHub Actions workflows, we can help you to set this up analog to our existing community partner compatibility checks.\nIdeally you can provide a script to create a compatibility report (a relativley simple json file) for a given resource description. see this Python script as an example.

    \n\n
    \n
    \n
      \n
    1. \n

      Parameters to this workflow are bioimage.io resource concept ID (id from the rdf.yaml), and Download URL of the resource package zip-file, which should contain a publicly reachable URL to a _resource package_ .zip-file. 

      \n
    2. \n\n
    3. \n

      Parameters to this workflow are Bioimage.io resource concept ID (id from the rdf.yaml), and Published version or 'draft' (optional, usually draft). 

      \n
    4. \n
    \n
    \n"}, "bioimageio_collection_backoffice.backup": {"fullname": "bioimageio_collection_backoffice.backup", "modulename": "bioimageio_collection_backoffice.backup", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.backup.yaml": {"fullname": "bioimageio_collection_backoffice.backup.yaml", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.backup.SkipForNow": {"fullname": "bioimageio_collection_backoffice.backup.SkipForNow", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "SkipForNow", "kind": "class", "doc": "

    Method or function hasn't been implemented yet.

    \n", "bases": "builtins.NotImplementedError"}, "bioimageio_collection_backoffice.backup.backup": {"fullname": "bioimageio_collection_backoffice.backup.backup", "modulename": "bioimageio_collection_backoffice.backup", "qualname": "backup", "kind": "function", "doc": "

    backup all published resources to their own zenodo records

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    Alias for field number 1

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    Alias for field number 2

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    Alias for field number 3

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    UpdatetableLRU with a limit on the sum of cache entry lengths,\nnot the number of cache entries

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    \n"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.collection_template": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.collection_template", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.collection_template", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.id_parts": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.id_parts", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.id_parts", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.id_parts.IdParts"}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.reviewers": {"fullname": "bioimageio_collection_backoffice.collection_config.CollectionConfig.reviewers", "modulename": "bioimageio_collection_backoffice.collection_config", "qualname": "CollectionConfig.reviewers", "kind": "variable", "doc": "

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    \n\n

    This replaces Model.__fields__ from Pydantic V1.

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    a summary of all collection records

    \n"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner", "kind": "class", "doc": "

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    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.explore_button_text": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.explore_button_text", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.explore_button_text", "kind": "variable", "doc": "

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    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.splash_title": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.splash_title", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.splash_title", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "Partner.model_config", "kind": "variable", "doc": "

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    This replaces Model.__fields__ from Pydantic V1.

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    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

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    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.background_image": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.background_image", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.background_image", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.default_type": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.default_type", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.default_type", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.explore_button_text": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.explore_button_text", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.explore_button_text", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.partners": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.partners", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.partners", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_config.collection_json_template.Partner]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_feature_list": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_feature_list", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.splash_feature_list", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_subtitle": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_subtitle", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.splash_subtitle", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_title": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.splash_title", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.splash_title", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'background_image': FieldInfo(annotation=str, required=True), 'default_type': FieldInfo(annotation=str, required=True), 'explore_button_text': FieldInfo(annotation=str, required=True), 'partners': FieldInfo(annotation=Sequence[Partner], required=True), 'splash_feature_list': FieldInfo(annotation=Sequence[str], required=True), 'splash_subtitle': FieldInfo(annotation=str, required=True), 'splash_title': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionWebsiteConfigTemplate.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate", "kind": "class", "doc": "

    a summary of all collection records

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.authors": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.authors", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.authors", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio.spec.generic.v0_3.Author]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.cite": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.cite", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.cite", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio.spec.generic.v0_3.CiteEntry]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.config": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.config", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.config", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.description": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.description", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.documentation": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.documentation", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.documentation", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.format_version": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.format_version", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.format_version", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio.spec._internal.version_type.Version"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.git_repo": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.git_repo", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.git_repo", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.icon": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.icon", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.icon", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.license": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.license", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.license", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio.spec._internal.license_id.LicenseId"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.name": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.name", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.tags": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.tags", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.tags", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.type": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.type", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.type", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['collection']"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.version": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.version", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.version", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio.spec._internal.version_type.Version"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'authors': FieldInfo(annotation=Sequence[Author], required=True), 'cite': FieldInfo(annotation=Sequence[CiteEntry], required=True), 'config': FieldInfo(annotation=CollectionWebsiteConfigTemplate, required=True), 'description': FieldInfo(annotation=str, required=True), 'documentation': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'format_version': FieldInfo(annotation=Version, required=True), 'git_repo': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'icon': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'license': FieldInfo(annotation=LicenseId, required=True), 'name': FieldInfo(annotation=str, required=True), 'tags': FieldInfo(annotation=Sequence[str], required=True), 'type': FieldInfo(annotation=Literal['collection'], required=True), 'version': FieldInfo(annotation=Version, required=True)}"}, "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.collection_json_template", "qualname": "CollectionJsonTemplate.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.id_parts": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "kind": "module", "doc": "

    describes a file holding all parts to create resource ids

    \n"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry", "kind": "class", "doc": "

    parts to create resource ids for a specific resource type

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.nouns": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.nouns", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.nouns", "kind": "variable", "doc": "

    \n", "annotation": ": Mapping[str, str]"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.adjectives": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.adjectives", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.adjectives", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.get_noun": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.get_noun", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.get_noun", "kind": "function", "doc": "

    \n", "signature": "(self, resource_id: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.validate_concept_id": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.validate_concept_id", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.validate_concept_id", "kind": "function", "doc": "

    \n", "signature": "(self, resource_id: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'nouns': FieldInfo(annotation=Mapping[str, str], required=True), 'adjectives': FieldInfo(annotation=Sequence[str], required=True)}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdPartsEntry.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts", "kind": "class", "doc": "

    parts to create resource ids

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.model", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.dataset": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.dataset", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.dataset", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.notebook": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.notebook", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.notebook", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.get_icon": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.get_icon", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.get_icon", "kind": "function", "doc": "

    \n", "signature": "(self, resource_id: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.select_type": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.select_type", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.select_type", "kind": "function", "doc": "

    \n", "signature": "(\tself,\ttype_: str) -> bioimageio_collection_backoffice.collection_config.id_parts.IdPartsEntry:", "funcdef": "def"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'model': FieldInfo(annotation=IdPartsEntry, required=True), 'dataset': FieldInfo(annotation=IdPartsEntry, required=True), 'notebook': FieldInfo(annotation=IdPartsEntry, required=True)}"}, "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.id_parts.IdParts.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.id_parts", "qualname": "IdParts.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.reviewers": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.id": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.id", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.id", "kind": "variable", "doc": "

    hypha id

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.name": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.name", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.affiliation": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.affiliation", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.affiliation", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.orcid": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.orcid", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.orcid", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.github_user": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.github_user", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.github_user", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.email": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.email", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.email", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_config": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_config", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_fields", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'id': FieldInfo(annotation=str, required=True), 'name': FieldInfo(annotation=str, required=True), 'affiliation': FieldInfo(annotation=str, required=True), 'orcid': FieldInfo(annotation=str, required=True), 'github_user': FieldInfo(annotation=str, required=True), 'email': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewer.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewer.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_config.reviewers.Reviewers": {"fullname": "bioimageio_collection_backoffice.collection_config.reviewers.Reviewers", "modulename": "bioimageio_collection_backoffice.collection_config.reviewers", "qualname": "Reviewers", "kind": "variable", "doc": "

    \n", "default_value": "typing.Sequence[bioimageio_collection_backoffice.collection_config.reviewers.Reviewer]"}, "bioimageio_collection_backoffice.collection_json": {"fullname": "bioimageio_collection_backoffice.collection_json", "modulename": "bioimageio_collection_backoffice.collection_json", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.collection_json.Author": {"fullname": "bioimageio_collection_backoffice.collection_json.Author", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.Author.name": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.name", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.Author.affiliation": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.affiliation", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.affiliation", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.Author.email": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.email", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.email", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.Author.orcid": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.orcid", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.orcid", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.Author.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.Author.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'name': FieldInfo(annotation=str, required=True), 'affiliation': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'email': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'orcid': FieldInfo(annotation=Union[str, NoneType], required=False, default=None)}"}, "bioimageio_collection_backoffice.collection_json.Author.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Author.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Author.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.Badge": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.Badge.icon": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.icon", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.icon", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_json.Badge.label": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.label", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.label", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.Badge.url": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.url", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.url", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_json.Badge.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.Badge.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'icon': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'label': FieldInfo(annotation=str, required=True), 'url': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)])}"}, "bioimageio_collection_backoffice.collection_json.Badge.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Badge.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Badge.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.TrainingData": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.TrainingData.id": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData.id", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.TrainingData.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.TrainingData.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'id': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_json.TrainingData.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.TrainingData.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "TrainingData.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.Uploader": {"fullname": "bioimageio_collection_backoffice.collection_json.Uploader", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Uploader", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.Uploader.name": {"fullname": "bioimageio_collection_backoffice.collection_json.Uploader.name", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Uploader.name", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.Uploader.email": {"fullname": "bioimageio_collection_backoffice.collection_json.Uploader.email", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Uploader.email", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.Uploader.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.Uploader.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Uploader.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.Uploader.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Uploader.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Uploader.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'name': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'email': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_json.Uploader.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.Uploader.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "Uploader.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.authors": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.authors", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.authors", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.Author]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.uploader": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.uploader", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.uploader", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_json.Uploader"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.badges": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.badges", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.badges", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.Badge]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.concept_doi": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.concept_doi", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.concept_doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.covers": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.covers", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.covers", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.created": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.created", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.description": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.description", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.download_count": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.download_count", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.download_count", "kind": "variable", "doc": "

    \n", "annotation": ": Union[Literal['?'], int]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.download_url": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.download_url", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.download_url", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.icon": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.icon", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.icon", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.id": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.id", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.license": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.license", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.license", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.links": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.links", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.links", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.name": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.name", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.nickname_icon": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.nickname_icon", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.nickname_icon", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.nickname": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.nickname", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.nickname", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.rdf_source": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.rdf_source", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.rdf_source", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.root_url": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.root_url", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.root_url", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.tags": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.tags", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.tags", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.training_data": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.training_data", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.training_data", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[bioimageio_collection_backoffice.collection_json.TrainingData]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.type": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.type", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.type", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['application', 'model', 'notebook', 'dataset']"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.source": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.source", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.source", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.status": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.status", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.status", "kind": "variable", "doc": "

    status of the draft (for collection_draft.json only)

    \n", "annotation": ": Union[Annotated[Union[bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus, bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus, bioimageio_collection_backoffice.db_structure.version_info.TestingStatus, bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus, bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus, bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus, bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)], bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus, NoneType]"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'authors': FieldInfo(annotation=Sequence[Author], required=True), 'uploader': FieldInfo(annotation=Uploader, required=True), 'badges': FieldInfo(annotation=Sequence[Badge], required=True), 'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=True), 'covers': FieldInfo(annotation=Sequence[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]], required=True), 'created': FieldInfo(annotation=datetime, required=True), 'description': FieldInfo(annotation=str, required=True), 'download_count': FieldInfo(annotation=Union[Literal['?'], int], required=True), 'download_url': FieldInfo(annotation=Union[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)], NoneType], required=False, default=None), 'icon': FieldInfo(annotation=Union[Annotated[Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)], NoneType], required=False, default=None), 'id': FieldInfo(annotation=str, required=True), 'license': FieldInfo(annotation=Union[str, NoneType], required=True), 'links': FieldInfo(annotation=Sequence[str], required=True), 'name': FieldInfo(annotation=str, required=True), 'nickname_icon': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'nickname': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'rdf_source': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'root_url': FieldInfo(annotation=str, required=True), 'tags': FieldInfo(annotation=Sequence[str], required=False, default=()), 'training_data': FieldInfo(annotation=Union[TrainingData, NoneType], required=False, default=None), 'type': FieldInfo(annotation=Literal['application', 'model', 'notebook', 'dataset'], required=True), 'source': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'status': FieldInfo(annotation=Union[Annotated[Union[UnpackingStatus, UnpackedStatus, TestingStatus, AwaitingReviewStatus, ChangesRequestedStatus, AcceptedStatus, PublishedDraftStatus], Discriminator], ErrorStatus, NoneType], required=False, default=None)}"}, "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionEntry.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionEntry.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionWebsiteConfigTemplate"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.n_resource_versions": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.n_resource_versions", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.n_resource_versions", "kind": "variable", "doc": "

    \n", "annotation": ": Mapping[str, int]"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.resource_types": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.resource_types", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.resource_types", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.n_resources": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.n_resources", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.n_resources", "kind": "variable", "doc": "

    \n", "annotation": ": Mapping[str, int]"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.url_root": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.url_root", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.url_root", "kind": "variable", "doc": "

    \n", "annotation": ": Annotated[pydantic_core._pydantic_core.Url, UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'background_image': FieldInfo(annotation=str, required=True), 'default_type': FieldInfo(annotation=str, required=True), 'explore_button_text': FieldInfo(annotation=str, required=True), 'partners': FieldInfo(annotation=Sequence[Partner], required=True), 'splash_feature_list': FieldInfo(annotation=Sequence[str], required=True), 'splash_subtitle': FieldInfo(annotation=str, required=True), 'splash_title': FieldInfo(annotation=str, required=True), 'n_resource_versions': FieldInfo(annotation=Mapping[str, int], required=True), 'resource_types': FieldInfo(annotation=Sequence[str], required=True), 'n_resources': FieldInfo(annotation=Mapping[str, int], required=True), 'url_root': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)])}"}, "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionWebsiteConfig.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.CollectionJson": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson", "kind": "class", "doc": "

    a summary of all collection records

    \n", "bases": "bioimageio_collection_backoffice.collection_config.collection_json_template.CollectionJsonTemplate"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.collection": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.collection", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.collection", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.CollectionEntry]"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.config": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.config", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_json.CollectionWebsiteConfig"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.created": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.created", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'authors': FieldInfo(annotation=Sequence[Author], required=True), 'cite': FieldInfo(annotation=Sequence[CiteEntry], required=True), 'config': FieldInfo(annotation=CollectionWebsiteConfig, required=True), 'description': FieldInfo(annotation=str, required=True), 'documentation': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'format_version': FieldInfo(annotation=Version, required=True), 'git_repo': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'icon': FieldInfo(annotation=Url, required=True, metadata=[UrlConstraints(max_length=2083, allowed_schemes=['http', 'https'], host_required=None, default_host=None, default_port=None, default_path=None)]), 'license': FieldInfo(annotation=LicenseId, required=True), 'name': FieldInfo(annotation=str, required=True), 'tags': FieldInfo(annotation=Sequence[str], required=True), 'type': FieldInfo(annotation=Literal['collection'], required=True), 'version': FieldInfo(annotation=Version, required=True), 'collection': FieldInfo(annotation=Sequence[CollectionEntry], required=True), 'created': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method)}"}, "bioimageio_collection_backoffice.collection_json.CollectionJson.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.CollectionJson.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "CollectionJson.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.v": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.v", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.v", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.created": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.created", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.doi": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.doi", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.source": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.source", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.source", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.sha256": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.sha256", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.sha256", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'v': FieldInfo(annotation=str, required=True), 'created': FieldInfo(annotation=datetime, required=True), 'doi': FieldInfo(annotation=Union[str, NoneType], required=True), 'source': FieldInfo(annotation=str, required=True), 'sha256': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptVersion.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptVersion.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.concept": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.concept", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.concept", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.type": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.type", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.type", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.concept_doi": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.concept_doi", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.concept_doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.versions": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.versions", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.versions", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.ConceptVersion]"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'concept': FieldInfo(annotation=str, required=True), 'type': FieldInfo(annotation=str, required=True), 'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=True), 'versions': FieldInfo(annotation=Sequence[ConceptVersion], required=True)}"}, "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.ConceptSummary.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "ConceptSummary.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.collection_json.AllVersions": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.collection_json.AllVersions.entries": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions.entries", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions.entries", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.collection_json.ConceptSummary]"}, "bioimageio_collection_backoffice.collection_json.AllVersions.model_config": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions.model_config", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.collection_json.AllVersions.model_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions.model_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'entries': FieldInfo(annotation=Sequence[ConceptSummary], required=True)}"}, "bioimageio_collection_backoffice.collection_json.AllVersions.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.collection_json.AllVersions.model_computed_fields", "modulename": "bioimageio_collection_backoffice.collection_json", "qualname": "AllVersions.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.common": {"fullname": "bioimageio_collection_backoffice.common", "modulename": "bioimageio_collection_backoffice.common", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.common.Node": {"fullname": "bioimageio_collection_backoffice.common.Node", "modulename": "bioimageio_collection_backoffice.common", "qualname": "Node", "kind": "class", "doc": "

    \n", "bases": "pydantic.main.BaseModel"}, "bioimageio_collection_backoffice.common.Node.model_config": {"fullname": "bioimageio_collection_backoffice.common.Node.model_config", "modulename": "bioimageio_collection_backoffice.common", "qualname": "Node.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.common.Node.model_fields": {"fullname": "bioimageio_collection_backoffice.common.Node.model_fields", "modulename": "bioimageio_collection_backoffice.common", "qualname": "Node.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.common.Node.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.common.Node.model_computed_fields", "modulename": "bioimageio_collection_backoffice.common", "qualname": "Node.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.conda_env": {"fullname": "bioimageio_collection_backoffice.conda_env", "modulename": "bioimageio_collection_backoffice.conda_env", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.conda_env.yaml": {"fullname": "bioimageio_collection_backoffice.conda_env.yaml", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.conda_env.SupportedWeightsEntry": {"fullname": "bioimageio_collection_backoffice.conda_env.SupportedWeightsEntry", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "SupportedWeightsEntry", "kind": "variable", "doc": "

    \n", "default_value": "typing.Union[bioimageio.spec.model.v0_4.OnnxWeightsDescr, bioimageio.spec.model.v0_4.PytorchStateDictWeightsDescr, bioimageio.spec.model.v0_4.TensorflowSavedModelBundleWeightsDescr, bioimageio.spec.model.v0_4.TorchscriptWeightsDescr, bioimageio.spec.model.v0_5.OnnxWeightsDescr, bioimageio.spec.model.v0_5.PytorchStateDictWeightsDescr, bioimageio.spec.model.v0_5.TensorflowSavedModelBundleWeightsDescr, bioimageio.spec.model.v0_5.TorchscriptWeightsDescr]"}, "bioimageio_collection_backoffice.conda_env.PipDeps": {"fullname": "bioimageio_collection_backoffice.conda_env.PipDeps", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "PipDeps", "kind": "class", "doc": "

    \n", "bases": "typing.TypedDict"}, "bioimageio_collection_backoffice.conda_env.PipDeps.pip": {"fullname": "bioimageio_collection_backoffice.conda_env.PipDeps.pip", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "PipDeps.pip", "kind": "variable", "doc": "

    \n", "annotation": ": List[str]"}, "bioimageio_collection_backoffice.conda_env.CondaEnv": {"fullname": "bioimageio_collection_backoffice.conda_env.CondaEnv", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "CondaEnv", "kind": "class", "doc": "

    \n", "bases": "typing.TypedDict"}, "bioimageio_collection_backoffice.conda_env.CondaEnv.name": {"fullname": "bioimageio_collection_backoffice.conda_env.CondaEnv.name", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "CondaEnv.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.conda_env.CondaEnv.channels": {"fullname": "bioimageio_collection_backoffice.conda_env.CondaEnv.channels", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "CondaEnv.channels", "kind": "variable", "doc": "

    \n", "annotation": ": List[str]"}, "bioimageio_collection_backoffice.conda_env.CondaEnv.dependencies": {"fullname": "bioimageio_collection_backoffice.conda_env.CondaEnv.dependencies", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "CondaEnv.dependencies", "kind": "variable", "doc": "

    \n", "annotation": ": List[Union[str, bioimageio_collection_backoffice.conda_env.PipDeps]]"}, "bioimageio_collection_backoffice.conda_env.get_conda_env": {"fullname": "bioimageio_collection_backoffice.conda_env.get_conda_env", "modulename": "bioimageio_collection_backoffice.conda_env", "qualname": "get_conda_env", "kind": "function", "doc": "

    \n", "signature": "(\t*,\tentry: Union[bioimageio.spec.model.v0_4.OnnxWeightsDescr, bioimageio.spec.model.v0_4.PytorchStateDictWeightsDescr, bioimageio.spec.model.v0_4.TensorflowSavedModelBundleWeightsDescr, bioimageio.spec.model.v0_4.TorchscriptWeightsDescr, bioimageio.spec.model.v0_5.OnnxWeightsDescr, bioimageio.spec.model.v0_5.PytorchStateDictWeightsDescr, bioimageio.spec.model.v0_5.TensorflowSavedModelBundleWeightsDescr, bioimageio.spec.model.v0_5.TorchscriptWeightsDescr],\tenv_name: str) -> bioimageio_collection_backoffice.conda_env.CondaEnv:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure": {"fullname": "bioimageio_collection_backoffice.db_structure", "modulename": "bioimageio_collection_backoffice.db_structure", "kind": "module", "doc": "

    pydantic models to describe the content of various files\nrelevant for the bioimage.io collection

    \n"}, "bioimageio_collection_backoffice.db_structure.chat": {"fullname": "bioimageio_collection_backoffice.db_structure.chat", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "kind": "module", "doc": "

    <concept_id>/<version>/chat.json keeps a record of version specific comments

    \n"}, "bioimageio_collection_backoffice.db_structure.chat.Message": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.chat.Message.author": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.author", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.author", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.chat.Message.text": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.text", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.text", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.chat.Message.timestamp": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.timestamp", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.timestamp", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.chat.Message.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.chat.Message.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'author': FieldInfo(annotation=str, required=True), 'text': FieldInfo(annotation=str, required=True), 'timestamp': FieldInfo(annotation=datetime, required=False, default=datetime.datetime(2024, 11, 13, 22, 34, 38, 185006))}"}, "bioimageio_collection_backoffice.db_structure.chat.Message.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Message.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Message.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.chat.Chat": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat", "kind": "class", "doc": "

    <concept_id>/<version>/chat.json keeps a record of version specific comments

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'chat.json'"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.messages": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.messages", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.messages", "kind": "variable", "doc": "

    messages

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.db_structure.chat.Message]"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.chat.Chat) -> bioimageio_collection_backoffice.db_structure.chat.Chat:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'messages': FieldInfo(annotation=Sequence[Message], required=False, default_factory=list)}"}, "bioimageio_collection_backoffice.db_structure.chat.Chat.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.chat.Chat.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.chat", "qualname": "Chat.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.compatibility": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport", "kind": "class", "doc": "

    Used to report on the compatibility of resource description\nin the bioimageio collection

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.tool", "kind": "variable", "doc": "

    toolname (including version separated by an underscore)

    \n", "annotation": ": Annotated[str, FieldInfo(annotation=NoneType, required=True, exclude=True, metadata=[_PydanticGeneralMetadata(pattern='^[^_]+_[^_]+$')])]"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool_wo_version": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.tool_wo_version", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.tool_wo_version", "kind": "variable", "doc": "

    assuming a pattern of _

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.status": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.status", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.status", "kind": "variable", "doc": "

    status of this tool for this resource

    \n", "annotation": ": Literal['passed', 'failed', 'not-applicable']"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.error": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.error", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.error", "kind": "variable", "doc": "

    error message if status=='failed'

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.details": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.details", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.details", "kind": "variable", "doc": "

    details to explain the status

    \n", "annotation": ": Any"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.badge": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.badge", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.badge", "kind": "variable", "doc": "

    status badge with a resource specific link to the tool

    \n", "annotation": ": Optional[bioimageio_collection_backoffice.collection_json.Badge]"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.links": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.links", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.links", "kind": "variable", "doc": "

    the checked resource should link these other bioimage.io resources

    \n", "annotation": ": Sequence[str]"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'allow', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'tool': FieldInfo(annotation=str, required=True, exclude=True, metadata=[_PydanticGeneralMetadata(pattern='^[^_]+_[^_]+$')]), 'status': FieldInfo(annotation=Literal['passed', 'failed', 'not-applicable'], required=True), 'error': FieldInfo(annotation=Union[str, NoneType], required=True), 'details': FieldInfo(annotation=Any, required=True), 'badge': FieldInfo(annotation=Union[Badge, NoneType], required=False, default=None), 'links': FieldInfo(annotation=Sequence[str], required=False, default=())}"}, "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "CompatibilityReport.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.error": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.error", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.error", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.name": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.name", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.name", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.status": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.status", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.status", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['passed', 'failed']"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.traceback": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.traceback", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.traceback", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Sequence[str]]"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.warnings": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.warnings", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.warnings", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Mapping[str, Any]]"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'error': FieldInfo(annotation=Union[str, NoneType], required=True), 'name': FieldInfo(annotation=str, required=True), 'status': FieldInfo(annotation=Literal['passed', 'failed'], required=True), 'traceback': FieldInfo(annotation=Union[Sequence[str], NoneType], required=True), 'warnings': FieldInfo(annotation=Union[Mapping[str, Any], NoneType], required=True)}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummaryEntry.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.compatibility.ToolName": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.ToolName", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "ToolName", "kind": "variable", "doc": "

    \n", "default_value": "<class 'str'>"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.status": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.status", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.status", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['passed', 'failed']"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.tests": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.tests", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.tests", "kind": "variable", "doc": "

    \n", "annotation": ": Mapping[str, Sequence[bioimageio_collection_backoffice.db_structure.compatibility.TestSummaryEntry]]"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'status': FieldInfo(annotation=Literal['passed', 'failed'], required=True), 'tests': FieldInfo(annotation=Mapping[str, Sequence[TestSummaryEntry]], required=True)}"}, "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.compatibility.TestSummary.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.compatibility", "qualname": "TestSummary.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.log": {"fullname": "bioimageio_collection_backoffice.db_structure.log", "modulename": "bioimageio_collection_backoffice.db_structure.log", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.message": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.message", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.message", "kind": "variable", "doc": "

    log message

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.details": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.details", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.details", "kind": "variable", "doc": "

    log details

    \n", "annotation": ": Any"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.details_formatted": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.details_formatted", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.details_formatted", "kind": "variable", "doc": "

    log details formatted as markdown

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.timestamp": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.timestamp", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.timestamp", "kind": "variable", "doc": "

    creation of log entry

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.run_url": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.run_url", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.run_url", "kind": "variable", "doc": "

    gh action run url

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'message': FieldInfo(annotation=str, required=False, default=''), 'details': FieldInfo(annotation=Any, required=False, default=None), 'details_formatted': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None)}"}, "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.log.LogEntry.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "LogEntry.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.log.Log": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log", "kind": "class", "doc": "

    <concept_id>/<version>/log.json contains a version specific log

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.log.Log.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'log.json'"}, "bioimageio_collection_backoffice.db_structure.log.Log.log_version": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.log_version", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.log_version", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.log.Log.entries": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.entries", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.entries", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.db_structure.log.LogEntry]"}, "bioimageio_collection_backoffice.db_structure.log.Log.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.log.Log) -> bioimageio_collection_backoffice.db_structure.log.Log:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.log.Log.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.log.Log.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'log_version': FieldInfo(annotation=str, required=False, default='0.1.0'), 'entries': FieldInfo(annotation=Sequence[LogEntry], required=False, default_factory=list)}"}, "bioimageio_collection_backoffice.db_structure.log.Log.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.log.Log.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.log", "qualname": "Log.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.reserved": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "kind": "module", "doc": "

    <concept_id>/<version>/reserved.json allows to reserve a concept id

    \n"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved", "kind": "class", "doc": "

    <concept_id>/<version>/reserved.json allows to reserve a concept id

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'reserved.json'"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.timestamp": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.timestamp", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.timestamp", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.reserved.Reserved) -> bioimageio_collection_backoffice.db_structure.reserved.Reserved:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method)}"}, "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.reserved.Reserved.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.reserved", "qualname": "Reserved.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['unpacking']"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[1]"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=True), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['unpacking'], required=False, default='unpacking'), 'step': FieldInfo(annotation=Literal[1], required=False, default=1)}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackingStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['unpacked']"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.description": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.description", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[2]"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=False, default='staging was successful; awaiting automated tests to start \u23f3'), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['unpacked'], required=False, default='unpacked'), 'step': FieldInfo(annotation=Literal[2], required=False, default=2)}"}, "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "UnpackedStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['testing']"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[3]"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=True), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['testing'], required=False, default='testing'), 'step': FieldInfo(annotation=Literal[3], required=False, default=3)}"}, "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.TestingStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "TestingStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['awaiting review']"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.description": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.description", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[4]"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=False, default='Thank you for your contribution! \ud83d\udcaaOur bioimage.io maintainers will take a look soon. \ud83e\udd92'), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['awaiting review'], required=False, default='awaiting review'), 'step': FieldInfo(annotation=Literal[4], required=False, default=4)}"}, "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AwaitingReviewStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['changes requested']"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[5]"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=True), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['changes requested'], required=False, default='changes requested'), 'step': FieldInfo(annotation=Literal[5], required=False, default=5)}"}, "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ChangesRequestedStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus", "kind": "class", "doc": "

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['accepted']"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.description": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.description", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[5]"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=False, default='This staged version has been accepted by a bioimage.io maintainer and is about to be published.'), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['accepted'], required=False, default='accepted'), 'step': FieldInfo(annotation=Literal[5], required=False, default=5)}"}, "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "AcceptedStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus", "kind": "class", "doc": "

    following AcceptedStatus

    \n", "bases": "_DraftStatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['published']"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.description": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.description", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.description", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[6]"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'description': FieldInfo(annotation=str, required=False, default='published! (this draft will be deleted shortly)'), 'num_steps': FieldInfo(annotation=int, required=False, default=6), 'name': FieldInfo(annotation=Literal['published'], required=False, default='published'), 'step': FieldInfo(annotation=Literal[6], required=False, default=6)}"}, "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "PublishedDraftStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftStatus", "kind": "variable", "doc": "

    \n", "default_value": "typing.Annotated[typing.Union[bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus, bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus, bioimageio_collection_backoffice.db_structure.version_info.TestingStatus, bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus, bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus, bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus, bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)]"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus", "kind": "class", "doc": "

    \n", "bases": "_StatusBase"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.name", "kind": "variable", "doc": "

    \n", "annotation": ": Literal['error']"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.step": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.step", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.step", "kind": "variable", "doc": "

    \n", "annotation": ": Literal[0]"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.message": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.message", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.message", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.traceback": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.traceback", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.traceback", "kind": "variable", "doc": "

    \n", "annotation": ": List[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.during": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.during", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.during", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Annotated[Union[bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus, bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus, bioimageio_collection_backoffice.db_structure.version_info.TestingStatus, bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus, bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus, bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus, bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)]]"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'timestamp': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'run_url': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'name': FieldInfo(annotation=Literal['error'], required=False, default='error'), 'step': FieldInfo(annotation=Literal[0], required=False, default=0), 'message': FieldInfo(annotation=str, required=True), 'traceback': FieldInfo(annotation=List[str], required=True), 'during': FieldInfo(annotation=Union[Annotated[Union[UnpackingStatus, UnpackedStatus, TestingStatus, AwaitingReviewStatus, ChangesRequestedStatus, AcceptedStatus, PublishedDraftStatus], Discriminator], NoneType], required=True)}"}, "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "ErrorStatus.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo", "kind": "class", "doc": "

    <concept_id>/draft/draft.json contains the collection entry metadata

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'draft.json'"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.status": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.status", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.status", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[Annotated[Union[Annotated[Union[bioimageio_collection_backoffice.db_structure.version_info.UnpackingStatus, bioimageio_collection_backoffice.db_structure.version_info.UnpackedStatus, bioimageio_collection_backoffice.db_structure.version_info.TestingStatus, bioimageio_collection_backoffice.db_structure.version_info.AwaitingReviewStatus, bioimageio_collection_backoffice.db_structure.version_info.ChangesRequestedStatus, bioimageio_collection_backoffice.db_structure.version_info.AcceptedStatus, bioimageio_collection_backoffice.db_structure.version_info.PublishedDraftStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)], bioimageio_collection_backoffice.db_structure.version_info.ErrorStatus], Discriminator(discriminator='name', custom_error_type=None, custom_error_message=None, custom_error_context=None)]]"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.created": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.created", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.version_info.DraftInfo) -> bioimageio_collection_backoffice.db_structure.version_info.DraftInfo:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'status': FieldInfo(annotation=Union[Annotated[Union[Annotated[Union[UnpackingStatus, UnpackedStatus, TestingStatus, AwaitingReviewStatus, ChangesRequestedStatus, AcceptedStatus, PublishedDraftStatus], Discriminator], ErrorStatus], Discriminator], NoneType], required=False, default=None), 'created': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method)}"}, "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.DraftInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "DraftInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo", "kind": "class", "doc": "

    <concept_id>/info.json contains the collection entry metadata

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.file_name": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.file_name", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.file_name", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'info.json'"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.created": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.created", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.concept_doi": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.concept_doi", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.concept_doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.doi": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.doi", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.doi", "kind": "variable", "doc": "

    version specific DOI

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.download_count": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.download_count", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.download_count", "kind": "variable", "doc": "

    \n", "annotation": ": Union[int, Literal['?']]"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.get_updated": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.get_updated", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.get_updated", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.version_info.RecordInfo) -> bioimageio_collection_backoffice.db_structure.version_info.RecordInfo:", "funcdef": "def"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'created': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'doi': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'download_count': FieldInfo(annotation=Union[int, Literal['?']], required=False, default='?')}"}, "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.RecordInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "RecordInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.created": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.created", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.created", "kind": "variable", "doc": "

    \n", "annotation": ": datetime.datetime"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.doi": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.doi", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.doi", "kind": "variable", "doc": "

    version specific DOI

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.v": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.v", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.v", "kind": "variable", "doc": "

    version

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'created': FieldInfo(annotation=datetime, required=False, default_factory=builtin_function_or_method), 'doi': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'v': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.concept_doi": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.concept_doi", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.concept_doi", "kind": "variable", "doc": "

    \n", "annotation": ": Optional[str]"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.versions": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.versions", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.versions", "kind": "variable", "doc": "

    \n", "annotation": ": Sequence[bioimageio_collection_backoffice.db_structure.version_info.VersionInfo]"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_config": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_config", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'concept_doi': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'versions': FieldInfo(annotation=Sequence[VersionInfo], required=False, default=())}"}, "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.db_structure.version_info.VersionsInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.db_structure.version_info", "qualname": "VersionsInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.gh_utils": {"fullname": "bioimageio_collection_backoffice.gh_utils", "modulename": "bioimageio_collection_backoffice.gh_utils", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.gh_utils.set_gh_actions_outputs": {"fullname": "bioimageio_collection_backoffice.gh_utils.set_gh_actions_outputs", "modulename": "bioimageio_collection_backoffice.gh_utils", "qualname": "set_gh_actions_outputs", "kind": "function", "doc": "

    \n", "signature": "(**outputs: Union[str, Any]):", "funcdef": "def"}, "bioimageio_collection_backoffice.gh_utils.workflow_dispatch": {"fullname": "bioimageio_collection_backoffice.gh_utils.workflow_dispatch", "modulename": "bioimageio_collection_backoffice.gh_utils", "qualname": "workflow_dispatch", "kind": "function", "doc": "

    \n", "signature": "(workflow_name: str, inputs: Dict[str, Any]):", "funcdef": "def"}, "bioimageio_collection_backoffice.id_map": {"fullname": "bioimageio_collection_backoffice.id_map", "modulename": "bioimageio_collection_backoffice.id_map", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.id_map.IdInfo": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo", "kind": "class", "doc": "

    \n", "bases": "bioimageio_collection_backoffice.common.Node"}, "bioimageio_collection_backoffice.id_map.IdInfo.source": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.source", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.source", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.id_map.IdInfo.sha256": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.sha256", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.sha256", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.id_map.IdInfo.model_config": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.model_config", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.model_config", "kind": "variable", "doc": "

    Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

    \n", "annotation": ": ClassVar[pydantic.config.ConfigDict]", "default_value": "{'extra': 'ignore', 'frozen': True, 'populate_by_name': True, 'revalidate_instances': 'never', 'validate_assignment': True, 'validate_default': False}"}, "bioimageio_collection_backoffice.id_map.IdInfo.model_fields": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.model_fields", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.model_fields", "kind": "variable", "doc": "

    Metadata about the fields defined on the model,\nmapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    \n\n

    This replaces Model.__fields__ from Pydantic V1.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.FieldInfo]]", "default_value": "{'source': FieldInfo(annotation=str, required=True), 'sha256': FieldInfo(annotation=str, required=True)}"}, "bioimageio_collection_backoffice.id_map.IdInfo.model_computed_fields": {"fullname": "bioimageio_collection_backoffice.id_map.IdInfo.model_computed_fields", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdInfo.model_computed_fields", "kind": "variable", "doc": "

    A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

    \n", "annotation": ": ClassVar[Dict[str, pydantic.fields.ComputedFieldInfo]]", "default_value": "{}"}, "bioimageio_collection_backoffice.id_map.IdMap": {"fullname": "bioimageio_collection_backoffice.id_map.IdMap", "modulename": "bioimageio_collection_backoffice.id_map", "qualname": "IdMap", "kind": "variable", "doc": "

    \n", "default_value": "typing.Mapping[str, bioimageio_collection_backoffice.id_map.IdInfo]"}, "bioimageio_collection_backoffice.mailroom": {"fullname": "bioimageio_collection_backoffice.mailroom", "modulename": "bioimageio_collection_backoffice.mailroom", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.mailroom.constants": {"fullname": "bioimageio_collection_backoffice.mailroom.constants", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.mailroom.constants.BOT_EMAIL": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.BOT_EMAIL", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "BOT_EMAIL", "kind": "variable", "doc": "

    \n", "default_value": "'bioimageiobot@gmail.com'"}, "bioimageio_collection_backoffice.mailroom.constants.IMAP_PORT": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.IMAP_PORT", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "IMAP_PORT", "kind": "variable", "doc": "

    \n", "default_value": "993"}, "bioimageio_collection_backoffice.mailroom.constants.SMTP_PORT": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.SMTP_PORT", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "SMTP_PORT", "kind": "variable", "doc": "

    \n", "default_value": "465"}, "bioimageio_collection_backoffice.mailroom.constants.SMTP_SERVER": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.SMTP_SERVER", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "SMTP_SERVER", "kind": "variable", "doc": "

    \n", "default_value": "'smtp.gmail.com'"}, "bioimageio_collection_backoffice.mailroom.constants.STATUS_UPDATE_SUBJECT": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.STATUS_UPDATE_SUBJECT", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "STATUS_UPDATE_SUBJECT", "kind": "variable", "doc": "

    \n", "default_value": "'bioimage.io status update: '"}, "bioimageio_collection_backoffice.mailroom.constants.REPLY_HINT": {"fullname": "bioimageio_collection_backoffice.mailroom.constants.REPLY_HINT", "modulename": "bioimageio_collection_backoffice.mailroom.constants", "qualname": "REPLY_HINT", "kind": "variable", "doc": "

    \n", "default_value": "'\\nPlease do not reply to this email.\\n'"}, "bioimageio_collection_backoffice.mailroom.send_email": {"fullname": "bioimageio_collection_backoffice.mailroom.send_email", "modulename": "bioimageio_collection_backoffice.mailroom.send_email", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.mailroom.send_email.notify_uploader": {"fullname": "bioimageio_collection_backoffice.mailroom.send_email.notify_uploader", "modulename": "bioimageio_collection_backoffice.mailroom.send_email", "qualname": "notify_uploader", "kind": "function", "doc": "

    \n", "signature": "(\trv: Union[bioimageio_collection_backoffice.remote_collection.RecordDraft, bioimageio_collection_backoffice.remote_collection.Record],\tsubject_end: str,\tmsg: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.mailroom.send_email.send_email": {"fullname": "bioimageio_collection_backoffice.mailroom.send_email.send_email", "modulename": "bioimageio_collection_backoffice.mailroom.send_email", "qualname": "send_email", "kind": "function", "doc": "

    \n", "signature": "(subject: str, body: str, recipients: List[str]):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_base": {"fullname": "bioimageio_collection_backoffice.remote_base", "modulename": "bioimageio_collection_backoffice.remote_base", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_base.RemoteBase": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase", "kind": "class", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.__init__": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.__init__", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.__init__", "kind": "function", "doc": "

    \n", "signature": "(client: bioimageio_collection_backoffice.s3_client.Client)"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.client": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.client", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.client", "kind": "variable", "doc": "

    Client to connect to remote storage

    \n", "annotation": ": bioimageio_collection_backoffice.s3_client.Client"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.id": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.id", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.folder": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.folder", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.folder", "kind": "variable", "doc": "

    The S3 (sub)prefix of this resource

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.log": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.log", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.log", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.db_structure.log.Log"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.log_message": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.log_message", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.log_message", "kind": "function", "doc": "

    \n", "signature": "(self, message: str, details: Optional[Any] = None):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_base.RemoteBase.log_error": {"fullname": "bioimageio_collection_backoffice.remote_base.RemoteBase.log_error", "modulename": "bioimageio_collection_backoffice.remote_base", "qualname": "RemoteBase.log_error", "kind": "function", "doc": "

    \n", "signature": "(self, error: Union[Exception, str], details: Optional[Any] = None):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection": {"fullname": "bioimageio_collection_backoffice.remote_collection", "modulename": "bioimageio_collection_backoffice.remote_collection", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.yaml": {"fullname": "bioimageio_collection_backoffice.remote_collection.yaml", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.remote_collection.LEGACY_DOWNLOAD_COUNTS": {"fullname": "bioimageio_collection_backoffice.remote_collection.LEGACY_DOWNLOAD_COUNTS", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "LEGACY_DOWNLOAD_COUNTS", "kind": "variable", "doc": "

    \n", "default_value": "{'affable-shark': 70601, 'ambitious-ant': 5830, 'ambitious-sloth': 12735, 'amiable-crocodile': 2516, 'chatty-frog': 54555, 'conscientious-seashell': 33362, 'courteous-otter': 4519, 'creative-panda': 35927, 'determined-chipmunk': 18747, 'discreet-rooster': 42990, 'easy-going-sauropod': 12717, 'efficient-chipmunk': 3556, 'emotional-cricket': 36653, 'fearless-crab': 39638, 'hiding-blowfish': 41816, 'hiding-tiger': 45822, 'humorous-owl': 40313, 'impartial-shark': 20822, 'impartial-shrimp': 44942, 'independent-shrimp': 23638, 'joyful-deer': 19265, 'kind-seashell': 40486, 'laid-back-lobster': 25850, 'loyal-parrot': 37100, 'loyal-squid': 30836, 'modest-octopus': 8531, 'naked-microbe': 23086, 'nice-peacock': 13995, 'noisy-fish': 12501, 'noisy-hedgehog': 6793, 'non-judgemental-eagle': 36554, 'organized-badger': 39777, 'organized-cricket': 10156, 'passionate-t-rex': 24267, 'pioneering-rhino': 28176, 'placid-llama': 39063, 'polite-pig': 21235, 'powerful-chipmunk': 35455, 'powerful-fish': 31743, 'shivering-raccoon': 34761, 'straightforward-crocodile': 25477, 'thoughtful-turtle': 25874, 'wild-whale': 29530, 'willing-hedgehog': 37772}"}, "bioimageio_collection_backoffice.remote_collection.LEGACY_VERSIONS": {"fullname": "bioimageio_collection_backoffice.remote_collection.LEGACY_VERSIONS", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "LEGACY_VERSIONS", "kind": "variable", "doc": "

    \n", "default_value": "{'10.5281/zenodo.5764892': ['6647674', '6322939'], '10.5281/zenodo.6338614': ['6338615'], '10.5281/zenodo.5869899': ['6647688', '6321179', '5869900'], '10.5281/zenodo.5874741': ['5874742'], '10.5281/zenodo.5914248': ['8186255', '6514622', '6514446', '5914249'], '10.5281/zenodo.6406756': ['6811922', '6811498', '6406757'], '10.5281/zenodo.5874841': ['6630266', '5874842'], '10.5281/zenodo.5749843': ['5888237'], '10.5281/zenodo.6028097': ['6028098'], '10.5281/zenodo.6348084': ['6348085'], '10.5281/zenodo.7261974': ['7782776', '7778377', '7688940', '7546703', '7261975'], '10.5281/zenodo.6028280': ['6647695', '6028281'], '10.5281/zenodo.6200635': ['7702687', '6538890', '6200636'], '10.5281/zenodo.6346511': ['7768142', '7701413', '6346512'], '10.5281/zenodo.6348728': ['6348729'], '10.5281/zenodo.5817052': ['5906839', '5850574'], '10.5281/zenodo.5847355': ['6647683', '6322908'], '10.5281/zenodo.6406803': ['6406804'], '10.5281/zenodo.6200999': ['7690494', '7678300', '6538911', '6224243'], '10.5281/zenodo.6384845': ['7774490', '7701638', '6384846'], '10.5281/zenodo.6383429': ['7774505', '7701632', '6383430'], '10.5281/zenodo.6079314': ['7695872', '7689587', '7688686', '6385590', '6079315'], '10.5281/zenodo.6334383': ['7805067', '7701262', '7697068', '6346500', '6334384'], '10.5281/zenodo.6334881': ['7805026', '7701241', '7696907', '6346477', '6334882'], '10.5281/zenodo.6334777': ['7765026', '7701561', '7696952', '6346524', '6334778'], '10.5281/zenodo.5910854': ['6539073', '5911832'], '10.5281/zenodo.6334583': ['7805434', '7768223', '7701492', '7696919', '6346519', '6334584'], '10.5281/zenodo.6811491': ['6811492'], '10.5281/zenodo.6559474': ['6559475'], '10.5281/zenodo.5910163': ['5942853'], '10.5281/zenodo.6865412': ['6919253'], '10.5281/zenodo.7274275': ['8123818', '7274276'], '10.5281/zenodo.6808325': ['6808413'], '10.5281/zenodo.7315440': ['7315441'], '10.5281/zenodo.7380171': ['7405349'], '10.5281/zenodo.7614645': ['7642674'], '10.5281/zenodo.7772662': ['7781091'], '10.5281/zenodo.7786492': ['7786493'], '10.5281/zenodo.8421755': ['8432366'], '10.5281/zenodo.8064806': ['8073617'], '10.5281/zenodo.6559929': ['6559930'], '10.5281/zenodo.8419845': ['8420081'], '10.5281/zenodo.8420099': ['8420100'], '10.5281/zenodo.8401064': ['8429203', '8401065'], '10.5281/zenodo.8142283': ['8171247'], '10.5281/zenodo.7612115': ['7612152']}"}, "bioimageio_collection_backoffice.remote_collection.P": {"fullname": "bioimageio_collection_backoffice.remote_collection.P", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "P", "kind": "variable", "doc": "

    \n", "default_value": "~P"}, "bioimageio_collection_backoffice.remote_collection.log": {"fullname": "bioimageio_collection_backoffice.remote_collection.log", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "log", "kind": "function", "doc": "

    method decorator to indicate that a method execution should be logged

    \n", "signature": "(\tfunc: Callable[Concatenate[~R, ~P], ~T]) -> Callable[Concatenate[~R, ~P], ~T]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.reviewer_role": {"fullname": "bioimageio_collection_backoffice.remote_collection.reviewer_role", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "reviewer_role", "kind": "function", "doc": "

    method decorator to indicate that a method may only be called by a bioimage.io reviewer

    \n", "signature": "(\tfunc: Callable[Concatenate[~R, str, ~P], ~T]) -> Callable[Concatenate[~R, str, ~P], ~T]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.lock_concept": {"fullname": "bioimageio_collection_backoffice.remote_collection.lock_concept", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "lock_concept", "kind": "function", "doc": "

    method decorator to indicate that a method may only be called by a bioimage.io reviewer

    \n", "signature": "(\tfunc: Callable[Concatenate[~R, ~P], ~T]) -> Callable[Concatenate[~R, ~P], ~T]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.lock_version": {"fullname": "bioimageio_collection_backoffice.remote_collection.lock_version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "lock_version", "kind": "function", "doc": "

    method decorator to indicate that a method may only be called by a bioimage.io reviewer

    \n", "signature": "(\tfunc: Callable[Concatenate[~R, ~P], ~T]) -> Callable[Concatenate[~R, ~P], ~T]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection", "kind": "class", "doc": "

    A representation of a (the) bioimage.io collection

    \n", "bases": "bioimageio_collection_backoffice.remote_base.RemoteBase"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.__init__", "kind": "function", "doc": "

    \n", "signature": "(client: bioimageio_collection_backoffice.s3_client.Client)"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.client": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.client", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.client", "kind": "variable", "doc": "

    Client to connect to remote storage

    \n", "annotation": ": bioimageio_collection_backoffice.s3_client.Client"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.folder": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.folder", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.folder", "kind": "variable", "doc": "

    collection folder is given by the client prefix

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.url": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.url", "kind": "variable", "doc": "

    collection.json url

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.config": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.config", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.config", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.collection_config.CollectionConfig"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.partner_ids": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.partner_ids", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.partner_ids", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_concepts": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_concepts", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_concepts", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.validate_concept_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.validate_concept_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.validate_concept_id", "kind": "function", "doc": "

    check if a concept id follows the defined pattern (not if it exists)

    \n", "signature": "(self, concept_id: str, *, type_: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_concpet_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_concpet_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.generate_concpet_id", "kind": "function", "doc": "

    generate a new, unused concept id

    \n", "signature": "(self, type_: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.reserve_concept_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.reserve_concept_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.reserve_concept_id", "kind": "function", "doc": "

    \n", "signature": "(self, concept_id: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_taken_concept_ids": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_taken_concept_ids", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_taken_concept_ids", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_drafts": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_drafts", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_drafts", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_published_versions": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_published_versions", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_published_versions", "kind": "function", "doc": "

    \n", "signature": "(self) -> List[bioimageio_collection_backoffice.remote_collection.Record]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_collection_json": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.generate_collection_json", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.generate_collection_json", "kind": "function", "doc": "

    generate a json file with an overview of all published resources\n(also generates versions.json files for each research concept)

    \n", "signature": "(self, mode: Literal['published', 'draft'] = 'published') -> None:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_collection_json": {"fullname": "bioimageio_collection_backoffice.remote_collection.RemoteCollection.get_collection_json", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RemoteCollection.get_collection_json", "kind": "function", "doc": "

    \n", "signature": "(self) -> bioimageio_collection_backoffice.collection_json.CollectionJson:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept", "kind": "class", "doc": "

    A representation of a bioimage.io resource\n(not a specific staged or published version of it)

    \n", "bases": "bioimageio_collection_backoffice.remote_base.RemoteBase"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.__init__", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str)"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.collection": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.collection", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.collection", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.remote_collection.RemoteCollection"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.concept_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.concept_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.concept_id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.id", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.draft", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.remote_collection.RecordDraft"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.get_published_versions": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.get_published_versions", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.get_published_versions", "kind": "function", "doc": "

    Get representations of the published version

    \n", "signature": "(self) -> List[bioimageio_collection_backoffice.remote_collection.Record]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft_new_version": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.draft_new_version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.draft_new_version", "kind": "function", "doc": "

    Stage the content at package_url as a new resource version candidate.

    \n", "signature": "(\tself,\tpackage_url: str) -> bioimageio_collection_backoffice.remote_collection.RecordDraft:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordConcept.doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordConcept.doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordConcept.doi", "kind": "variable", "doc": "

    (version unspecific) Zenodo concept DOI of the\nlatest published version of this resource concept

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordBase": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase", "kind": "class", "doc": "

    Base class for a RecordDraft and Record

    \n", "bases": "bioimageio_collection_backoffice.remote_base.RemoteBase, abc.ABC"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.__init__", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str)"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.concept_id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.concept_id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.concept_id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.concept": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.concept", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.concept", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.remote_collection.RecordConcept"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.collection": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.collection", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.collection", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.exists": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.exists", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.exists", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_path": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_path", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.rdf_path", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_rdf": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_rdf", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_rdf", "kind": "function", "doc": "

    \n", "signature": "(self) -> Dict[str, Any]:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_url": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.rdf_url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.rdf_url", "kind": "variable", "doc": "

    rdf.yaml download URL

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.chat": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.chat", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.chat", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.db_structure.chat.Chat"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.add_log_entry": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.add_log_entry", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.add_log_entry", "kind": "function", "doc": "

    add a log entry

    \n", "signature": "(\tself,\tlog_entry: bioimageio_collection_backoffice.db_structure.log.LogEntry):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.extend_log": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.extend_log", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.extend_log", "kind": "function", "doc": "

    extend log file

    \n", "signature": "(\tself,\textension: bioimageio_collection_backoffice.db_structure.log.Log):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.extend_chat": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.extend_chat", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.extend_chat", "kind": "function", "doc": "

    extend chat file

    \n", "signature": "(\tself,\textension: bioimageio_collection_backoffice.db_structure.chat.Chat):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_uploader": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_uploader", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_uploader", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_url": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_file_url", "kind": "function", "doc": "

    \n", "signature": "(self, path: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_urls": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_urls", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_file_urls", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_paths": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_file_paths", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_file_paths", "kind": "function", "doc": "

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_all_compatibility_reports": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_all_compatibility_reports", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_all_compatibility_reports", "kind": "function", "doc": "

    get all compatibility reports

    \n", "signature": "(self, tool: Optional[str] = None):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.get_compatibility_report_path": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.get_compatibility_report_path", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.get_compatibility_report_path", "kind": "function", "doc": "

    \n", "signature": "(self, tool: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordBase.set_compatibility_report": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordBase.set_compatibility_report", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordBase.set_compatibility_report", "kind": "function", "doc": "

    \n", "signature": "(\tself,\treport: bioimageio_collection_backoffice.db_structure.compatibility.CompatibilityReport) -> None:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft", "kind": "class", "doc": "

    A staged resource version

    \n", "bases": "RecordBase"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.__init__", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str)"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.version": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.version", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[str]", "default_value": "'draft'"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.doi", "kind": "variable", "doc": "

    \n", "annotation": ": ClassVar[NoneType]", "default_value": "None"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.folder": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.folder", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.folder", "kind": "variable", "doc": "

    The S3 (sub)prefix of this version\n(sub)prefix, because the client may prefix this prefix

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.id": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.info": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.info", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.info", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.db_structure.version_info.DraftInfo"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.update_info": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.update_info", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.update_info", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.version_info.DraftInfo):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.bioimageio_url": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.bioimageio_url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.bioimageio_url", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.concept_doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.concept_doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.concept_doi", "kind": "variable", "doc": "

    concept DOI of Zenodo record

    \n"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.unpack": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.unpack", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.unpack", "kind": "function", "doc": "

    \n", "signature": "(self, package_url: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.set_testing_status": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.set_testing_status", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.set_testing_status", "kind": "function", "doc": "

    \n", "signature": "(self, description: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.await_review": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.await_review", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.await_review", "kind": "function", "doc": "

    set status to 'awaiting review'

    \n", "signature": "(self):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.request_changes": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.request_changes", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.request_changes", "kind": "function", "doc": "

    \n", "signature": "(self, reviewer: str, reason: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.RecordDraft.publish": {"fullname": "bioimageio_collection_backoffice.remote_collection.RecordDraft.publish", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "RecordDraft.publish", "kind": "function", "doc": "

    mark this staged version candidate as accepted and try to publish it

    \n", "signature": "(\tself,\treviewer: str) -> bioimageio_collection_backoffice.remote_collection.Record:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.Record": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record", "kind": "class", "doc": "

    A representation of a published resource version

    \n", "bases": "RecordBase"}, "bioimageio_collection_backoffice.remote_collection.Record.__init__": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.__init__", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.__init__", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str,\tversion: str)"}, "bioimageio_collection_backoffice.remote_collection.Record.version": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.version", "kind": "variable", "doc": "

    a (semantic) version string

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.Record.id": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.id", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.id", "kind": "variable", "doc": "

    \n", "annotation": ": str"}, "bioimageio_collection_backoffice.remote_collection.Record.doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.doi", "kind": "variable", "doc": "

    version specific DOI of Zenodo record

    \n"}, "bioimageio_collection_backoffice.remote_collection.Record.concept_doi": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.concept_doi", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.concept_doi", "kind": "variable", "doc": "

    concept DOI of Zenodo record

    \n"}, "bioimageio_collection_backoffice.remote_collection.Record.bioimageio_url": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.bioimageio_url", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.bioimageio_url", "kind": "variable", "doc": "

    \n"}, "bioimageio_collection_backoffice.remote_collection.Record.info": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.info", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.info", "kind": "variable", "doc": "

    \n", "annotation": ": bioimageio_collection_backoffice.db_structure.version_info.RecordInfo"}, "bioimageio_collection_backoffice.remote_collection.Record.update_info": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.update_info", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.update_info", "kind": "function", "doc": "

    \n", "signature": "(\tself,\tupdate: bioimageio_collection_backoffice.db_structure.version_info.RecordInfo):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.Record.set_dois": {"fullname": "bioimageio_collection_backoffice.remote_collection.Record.set_dois", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "Record.set_dois", "kind": "function", "doc": "

    \n", "signature": "(self, *, doi: str, concept_doi: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.get_remote_resource_version": {"fullname": "bioimageio_collection_backoffice.remote_collection.get_remote_resource_version", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "get_remote_resource_version", "kind": "function", "doc": "

    \n", "signature": "(\tclient: bioimageio_collection_backoffice.s3_client.Client,\tconcept_id: str,\tversion: Union[int, float, str]):", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.maybe_swap_with_thumbnail": {"fullname": "bioimageio_collection_backoffice.remote_collection.maybe_swap_with_thumbnail", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "maybe_swap_with_thumbnail", "kind": "function", "doc": "

    \n", "signature": "(\tsrc: Union[Any, Dict[Any, Any], List[Any]],\tthumbnails: Mapping[str, str]) -> Any:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.resolve_relative_path": {"fullname": "bioimageio_collection_backoffice.remote_collection.resolve_relative_path", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "resolve_relative_path", "kind": "function", "doc": "

    \n", "signature": "(\tsrc: Union[Any, Dict[Any, Any], List[Any]],\tparsed_root: urllib.parse.SplitResult) -> Any:", "funcdef": "def"}, "bioimageio_collection_backoffice.remote_collection.create_collection_entries": {"fullname": "bioimageio_collection_backoffice.remote_collection.create_collection_entries", "modulename": "bioimageio_collection_backoffice.remote_collection", "qualname": "create_collection_entries", "kind": "function", "doc": "

    create collection entries from a single (draft) record

    \n", "signature": "(\tversions: Sequence[Union[bioimageio_collection_backoffice.remote_collection.Record, bioimageio_collection_backoffice.remote_collection.RecordDraft]]) -> Tuple[List[bioimageio_collection_backoffice.collection_json.CollectionEntry], Mapping[str, bioimageio_collection_backoffice.id_map.IdInfo]]:", "funcdef": "def"}, "bioimageio_collection_backoffice.requests_utils": {"fullname": "bioimageio_collection_backoffice.requests_utils", "modulename": "bioimageio_collection_backoffice.requests_utils", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.requests_utils.raise_for_status_discretely": {"fullname": "bioimageio_collection_backoffice.requests_utils.raise_for_status_discretely", "modulename": "bioimageio_collection_backoffice.requests_utils", "qualname": "raise_for_status_discretely", "kind": "function", "doc": "

    Raises HTTPError, if one occurred,\nbut removes query from url to avoid leaking access tokens, etc.

    \n\n

    adapted from requests.Response.raise_for_status

    \n", "signature": "(response: requests.models.Response):", "funcdef": "def"}, "bioimageio_collection_backoffice.requests_utils.put_file_from_url": {"fullname": "bioimageio_collection_backoffice.requests_utils.put_file_from_url", "modulename": "bioimageio_collection_backoffice.requests_utils", "qualname": "put_file_from_url", "kind": "function", "doc": "

    Gets a remote file and pushes it up to a destination

    \n", "signature": "(file_url: str, destination_url: str, params: Dict[str, Any]) -> None:", "funcdef": "def"}, "bioimageio_collection_backoffice.requests_utils.put_file": {"fullname": "bioimageio_collection_backoffice.requests_utils.put_file", "modulename": "bioimageio_collection_backoffice.requests_utils", "qualname": "put_file", "kind": "function", "doc": "

    \n", "signature": "(file_object: _io.BytesIO, url: str, params: Dict[str, Any]):", "funcdef": "def"}, "bioimageio_collection_backoffice.run_dynamic_tests": {"fullname": "bioimageio_collection_backoffice.run_dynamic_tests", "modulename": "bioimageio_collection_backoffice.run_dynamic_tests", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.run_dynamic_tests.yaml": {"fullname": "bioimageio_collection_backoffice.run_dynamic_tests.yaml", "modulename": "bioimageio_collection_backoffice.run_dynamic_tests", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.run_dynamic_tests.get_summary_detail_from_exception": {"fullname": "bioimageio_collection_backoffice.run_dynamic_tests.get_summary_detail_from_exception", "modulename": "bioimageio_collection_backoffice.run_dynamic_tests", "qualname": "get_summary_detail_from_exception", "kind": "function", "doc": "

    \n", "signature": "(name: str, exception: Exception):", "funcdef": "def"}, "bioimageio_collection_backoffice.run_dynamic_tests.run_dynamic_tests": {"fullname": "bioimageio_collection_backoffice.run_dynamic_tests.run_dynamic_tests", "modulename": "bioimageio_collection_backoffice.run_dynamic_tests", "qualname": "run_dynamic_tests", "kind": "function", "doc": "

    \n", "signature": "(\trecord: Union[bioimageio_collection_backoffice.remote_collection.Record, bioimageio_collection_backoffice.remote_collection.RecordDraft],\tweight_format: Optional[Literal['keras_hdf5', 'onnx', 'pytorch_state_dict', 'tensorflow_js', 'tensorflow_saved_model_bundle', 'torchscript']],\tcreate_env_outcome: str,\tconda_env_file: pathlib.Path):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client": {"fullname": "bioimageio_collection_backoffice.s3_client", "modulename": "bioimageio_collection_backoffice.s3_client", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.s3_client.yaml": {"fullname": "bioimageio_collection_backoffice.s3_client.yaml", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "yaml", "kind": "variable", "doc": "

    \n", "default_value": "<ruyaml.main.YAML object>"}, "bioimageio_collection_backoffice.s3_client.Client": {"fullname": "bioimageio_collection_backoffice.s3_client.Client", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client", "kind": "class", "doc": "

    Convenience wrapper around a Minio S3 client

    \n"}, "bioimageio_collection_backoffice.s3_client.Client.__init__": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.__init__", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.__init__", "kind": "function", "doc": "

    \n", "signature": "(\thost: str = 'uk1s3.embassy.ebi.ac.uk',\tbucket: str = 'public-datasets',\tprefix: str = 'testing.bioimage.io/runner/instance',\taccess_key: pydantic.types.SecretStr = SecretStr(''),\tsecret_key: pydantic.types.SecretStr = SecretStr(''),\tmax_bytes_cached: int = 1000000000)"}, "bioimageio_collection_backoffice.s3_client.Client.host": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.host", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.host", "kind": "variable", "doc": "

    S3 host

    \n", "annotation": ": str", "default_value": "'uk1s3.embassy.ebi.ac.uk'"}, "bioimageio_collection_backoffice.s3_client.Client.bucket": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.bucket", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.bucket", "kind": "variable", "doc": "

    S3 bucket

    \n", "annotation": ": str", "default_value": "'public-datasets'"}, "bioimageio_collection_backoffice.s3_client.Client.prefix": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.prefix", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.prefix", "kind": "variable", "doc": "

    S3 prefix ('root folder')

    \n", "annotation": ": str", "default_value": "'testing.bioimage.io/runner/instance'"}, "bioimageio_collection_backoffice.s3_client.Client.access_key": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.access_key", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.access_key", "kind": "variable", "doc": "

    S3 access key

    \n", "annotation": ": pydantic.types.SecretStr", "default_value": "SecretStr('')"}, "bioimageio_collection_backoffice.s3_client.Client.secret_key": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.secret_key", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.secret_key", "kind": "variable", "doc": "

    S3 secret key

    \n", "annotation": ": pydantic.types.SecretStr", "default_value": "SecretStr('')"}, "bioimageio_collection_backoffice.s3_client.Client.max_bytes_cached": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.max_bytes_cached", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.max_bytes_cached", "kind": "variable", "doc": "

    \n", "annotation": ": int", "default_value": "1000000000"}, "bioimageio_collection_backoffice.s3_client.Client.put_and_cache": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_and_cache", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_and_cache", "kind": "function", "doc": "

    \n", "signature": "(self, path: str, file: bytes):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put", "kind": "function", "doc": "

    upload a file(like object)

    \n", "signature": "(\tself,\tpath: str,\tfile_object: Union[_io.BytesIO, BinaryIO],\tlength: Optional[int]) -> None:", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put_pydantic": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_pydantic", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_pydantic", "kind": "function", "doc": "

    upload a json file from a pydantic model

    \n", "signature": "(self, path: str, obj: pydantic.main.BaseModel):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put_json": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_json", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_json", "kind": "function", "doc": "

    upload a json file from a json serializable value

    \n", "signature": "(self, path: str, json_value: Any):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put_yaml": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_yaml", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_yaml", "kind": "function", "doc": "

    upload a yaml file from a yaml serializable value

    \n", "signature": "(self, yaml_value: Any, path: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.put_json_string": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.put_json_string", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.put_json_string", "kind": "function", "doc": "

    \n", "signature": "(self, path: str, json_str: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.get_file_urls": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.get_file_urls", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.get_file_urls", "kind": "function", "doc": "

    Checks an S3 'folder' for its list of files

    \n", "signature": "(self, path: str = '') -> List[str]:", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.ls": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.ls", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.ls", "kind": "function", "doc": "

    List folder contents, non-recursive, ala ls but no \".\" or \"..\"

    \n", "signature": "(\tself,\tpath: str,\tonly_folders: bool = False,\tonly_files: bool = False) -> Iterator[str]:", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.cp_dir": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.cp_dir", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.cp_dir", "kind": "function", "doc": "

    \n", "signature": "(self, src: str, tgt: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.mv_dir": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.mv_dir", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.mv_dir", "kind": "function", "doc": "

    copy and delete all objects under src to tgt

    \n", "signature": "(self, src: str, tgt: str, *, bypass_governance_mode: bool = False):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.rm_dir": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.rm_dir", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.rm_dir", "kind": "function", "doc": "

    remove all objects under prefix

    \n", "signature": "(self, prefix: str, *, bypass_governance_mode: bool = False):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.rm": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.rm", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.rm", "kind": "function", "doc": "

    \n", "signature": "(self, object: str):", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.load_file": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.load_file", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.load_file", "kind": "function", "doc": "

    Load file

    \n\n
    Returns:
    \n\n
    \n

    file content or None if no object at path was found.

    \n
    \n", "signature": "(self, path: str, /) -> Optional[bytes]:", "funcdef": "def"}, "bioimageio_collection_backoffice.s3_client.Client.get_file_url": {"fullname": "bioimageio_collection_backoffice.s3_client.Client.get_file_url", "modulename": "bioimageio_collection_backoffice.s3_client", "qualname": "Client.get_file_url", "kind": "function", "doc": "

    Get the full URL to path

    \n", "signature": "(self, path: str) -> str:", "funcdef": "def"}, "bioimageio_collection_backoffice.validate_format": {"fullname": "bioimageio_collection_backoffice.validate_format", "modulename": "bioimageio_collection_backoffice.validate_format", "kind": "module", "doc": "

    \n"}, "bioimageio_collection_backoffice.validate_format.validate_format": {"fullname": "bioimageio_collection_backoffice.validate_format.validate_format", "modulename": "bioimageio_collection_backoffice.validate_format", "qualname": "validate_format", "kind": "function", "doc": "

    \n", "signature": "(\trv: Union[bioimageio_collection_backoffice.remote_collection.RecordDraft, bioimageio_collection_backoffice.remote_collection.Record]):", "funcdef": "def"}}, "docInfo": {"bioimageio_collection_backoffice": {"qualname": 0, "fullname": 3, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 1276}, "bioimageio_collection_backoffice.backup": {"qualname": 0, "fullname": 4, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.backup.yaml": {"qualname": 1, "fullname": 5, "annotation": 0, "default_value": 8, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.backup.SkipForNow": {"qualname": 1, "fullname": 5, "annotation": 0, "default_value": 0, "signature": 0, "bases": 2, "doc": 11}, "bioimageio_collection_backoffice.backup.backup": {"qualname": 1, "fullname": 5, "annotation": 0, "default_value": 0, "signature": 29, "bases": 0, "doc": 11}, "bioimageio_collection_backoffice.backup.backup_published_version": {"qualname": 3, "fullname": 7, "annotation": 0, "default_value": 0, "signature": 29, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.backup.rdf_authors_to_metadata_creators": {"qualname": 5, "fullname": 9, "annotation": 0, "default_value": 0, "signature": 700, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.backup.rdf_to_zenodo_metadata": {"qualname": 4, "fullname": 8, "annotation": 0, "default_value": 0, "signature": 782, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.backup.generate_related_identifiers_from_rdf": {"qualname": 5, "fullname": 9, "annotation": 0, "default_value": 0, "signature": 713, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.cache": {"qualname": 0, "fullname": 4, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.cache.Ks": {"qualname": 1, "fullname": 5, "annotation": 0, "default_value": 1, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.cache.CacheInfo": {"qualname": 1, "fullname": 5, "annotation": 0, "default_value": 0, "signature": 0, "bases": 2, "doc": 8}, "bioimageio_collection_backoffice.cache.CacheInfo.__init__": {"qualname": 3, "fullname": 7, "annotation": 0, "default_value": 0, "signature": 44, "bases": 0, "doc": 12}, "bioimageio_collection_backoffice.cache.CacheInfo.hits": {"qualname": 2, "fullname": 6, "annotation": 2, "default_value": 0, "signature": 0, "bases": 0, "doc": 7}, "bioimageio_collection_backoffice.cache.CacheInfo.misses": {"qualname": 2, "fullname": 6, "annotation": 2, "default_value": 0, "signature": 0, "bases": 0, "doc": 7}, "bioimageio_collection_backoffice.cache.CacheInfo.maxsize": {"qualname": 2, "fullname": 6, "annotation": 2, "default_value": 0, "signature": 0, "bases": 0, "doc": 7}, "bioimageio_collection_backoffice.cache.CacheInfo.currsize": {"qualname": 2, "fullname": 6, "annotation": 2, "default_value": 0, "signature": 0, "bases": 0, "doc": 7}, "bioimageio_collection_backoffice.cache.UpdatetableLRU": {"qualname": 1, "fullname": 5, "annotation": 0, "default_value": 0, "signature": 0, "bases": 4, "doc": 13}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.__init__": {"qualname": 3, "fullname": 7, "annotation": 0, "default_value": 0, "signature": 21, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.maxsize": {"qualname": 2, "fullname": 6, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.cache_info": {"qualname": 3, "fullname": 7, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.update": {"qualname": 2, "fullname": 6, "annotation": 0, "default_value": 0, "signature": 85, "bases": 0, "doc": 17}, "bioimageio_collection_backoffice.cache.UpdatetableLRU.pop": {"qualname": 2, "fullname": 6, "annotation": 0, "default_value": 0, "signature": 31, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.cache.SizedValueLRU": {"qualname": 1, "fullname": 5, "annotation": 0, "default_value": 0, "signature": 0, "bases": 8, "doc": 21}, "bioimageio_collection_backoffice.collection_config": {"qualname": 0, "fullname": 5, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.CollectionConfig": {"qualname": 1, "fullname": 6, "annotation": 0, "default_value": 0, "signature": 0, "bases": 5, "doc": 3}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.collection_template": {"qualname": 3, "fullname": 8, "annotation": 10, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.id_parts": {"qualname": 3, "fullname": 8, "annotation": 9, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.reviewers": {"qualname": 2, "fullname": 7, "annotation": 8, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.partners": {"qualname": 2, "fullname": 7, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.load": {"qualname": 2, "fullname": 7, "annotation": 0, "default_value": 0, "signature": 11, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_config": {"qualname": 3, "fullname": 8, "annotation": 4, "default_value": 40, "signature": 0, "bases": 0, "doc": 18}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_fields": {"qualname": 3, "fullname": 8, "annotation": 5, "default_value": 31, "signature": 0, "bases": 0, "doc": 35}, "bioimageio_collection_backoffice.collection_config.CollectionConfig.model_computed_fields": {"qualname": 4, "fullname": 9, "annotation": 5, "default_value": 1, "signature": 0, "bases": 0, "doc": 16}, "bioimageio_collection_backoffice.collection_config.collection_json_template": {"qualname": 0, "fullname": 8, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 8}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner": {"qualname": 1, "fullname": 9, "annotation": 0, "default_value": 0, "signature": 0, "bases": 5, "doc": 3}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.background_image": {"qualname": 3, "fullname": 11, "annotation": 2, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.default_type": {"qualname": 3, "fullname": 11, "annotation": 2, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.explore_button_text": {"qualname": 4, "fullname": 12, "annotation": 2, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.icon": {"qualname": 2, "fullname": 10, "annotation": 33, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.id": {"qualname": 2, "fullname": 10, "annotation": 2, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.logo": {"qualname": 2, "fullname": 10, "annotation": 33, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "bioimageio_collection_backoffice.collection_config.collection_json_template.Partner.name": {"qualname": 2, "fullname": 10, "annotation": 2, "default_value": 0, "signature": 0, "bases": 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