v3.6.0

What's Changed

• adding aspect qualifier enums by @EvanDietzMorris in #1380
• update name for gtrx infores source to match BTE's name. by @sierra-moxon in #1384
• reorder id_prefixes for small molecule, fixes #1375 by @sierra-moxon in #1376
• Update infores_catalog.yaml by @beasleyjonm in #1389
• PFCOR->PFOCR by @sierra-moxon in #1385
• Bump certifi from 2023.5.7 to 2023.7.22 by @dependabot in #1382
• Created new class GeneAffectsChemicalAssociation with qualifiers by @RichardBruskiewich in #1388
• Cx infores edits by @colleenXu in #1391
• Update understanding-the-model.md by @pabloDumas in #1394
• Fix answer appraiser infores by @maximusunc in #1396
• Chemical prefixes - propagate id_prefixes down the chemical entity hierarchy by @sierra-moxon in #1398
• Bump urllib3 from 2.0.2 to 2.0.6 by @dependabot in #1397
• Fix foodb prefixes by @cbizon in #1399
• Update xref URL for infores:arax in infores_catalog.yaml by @saramsey in #1403
• add pydantic-v2 model by @glass-ships in #1404
• Bump urllib3 from 2.0.2 to 2.0.7 by @dependabot in #1400
• add semantic map to STY:T167, fixes #1370 by @sierra-moxon in #1406
• Add qualifier to Association by @kevinschaper in #1407
• Bump urllib3 from 2.0.2 to 2.0.7 by @dependabot in #1409
• Adds deprecated as a node property slot added to biolink:Entity by @kevinschaper in #1421
• Update infores_catalog.yaml by @karafecho in #1422
• Update infores_catalog.yaml by @karafecho in #1423
• bump release to pre-doc change, 3.6.0 release, regenerate pydantic models by @sierra-moxon in #1427

New Contributors

• @pabloDumas made their first contribution in #1394
• @maximusunc made their first contribution in #1396
• @saramsey made their first contribution in #1403
• @glass-ships made their first contribution in #1404

Full Changelog: v3.5.4...v3.6.0

v3.5.4

What's Changed

• adding infores for MolePro new data source. by @sierra-moxon in #1377
• many URL updates in the infores catalog to conform with Translator wiki requirements.

Full Changelog: v3.5.3...v3.5.4

v3.5.3

What's Changed

• fix: chemical-affects-gene-association aspect qualifier range by @colleenXu in #1362
• add association slot annotation to support graphs slot, add 'semmed agreement count' as an association slot by @sierra-moxon in #1364
• Adds synonym to named thing, removes it from gene by @kevinschaper in #1369
• Update domain and range of gene condition association by @nicholsn in #1367
• Bump certifi from 2023.5.7 to 2023.7.22 by @dependabot in #1365

Full Changelog: v3.5.2...v3.5.3

v3.5.2

What's Changed

• refactor exclusion list code to remove predicate 'humn', fix t-codes by @sierra-moxon in #1358
• Exlusion list by @sierra-moxon in #1359
• more infores updates by @sierra-moxon in #1360

Full Changelog: v3.5.1...v3.5.2

v3.5.1

What's Changed

• a few new entries for the infores catalog by @EvanDietzMorris in #1350
• fix duplicated 'deprecated' syntax by @sierra-moxon in #1349
• Semmed exclusion yaml by @sierra-moxon in #1356
• Information resource updates - per TAQA curation by @sierra-moxon in #1357

Full Changelog: v3.5.0...v3.5.1

v3.5.0

What's Changed

• Adding xref for Text Mining KP by @edgargaticaCU in #1332
• Update MolePro xref in infores catalog by @vdancik in #1334
• Fix broken link in guidelines/README.md by @Daniel-Mietchen in #1336
• update BTE link in infores catalog by @andrewsu in #1337
• Add "full name" slot to the "named thing" slot list by @kevinschaper in #1335
• log odds ratio 95 ci by @CaseyTa in #1340
• Update dataset iri mappings by @nicholsn in #1338
• Stop gap changes to infores_catalog.yaml including knowledge_level and agent_type fields by @sierra-moxon in #1331
• Update BTE link to point to Translator wiki page by @andrewsu in #1342
• add simple script to extract infores resources without URLs or with g… by @sierra-moxon in #1343
• Updated infores catalog according to spreadsheet curation by @sierra-moxon in #1345
• fix : in url by @sierra-moxon in #1346
• Update infores_catalog.yaml by @karafecho in #1347

New Contributors

• @Daniel-Mietchen made their first contribution in #1336
• @nicholsn made their first contribution in #1338

Full Changelog: v3.4.3...v3.5.0

v3.4.3

What's Changed

• add 'in taxon label' as a slot on 'thing with taxon' by @kevinschaper in #1329

Full Changelog: v3.4.2...v3.4.3

v3.4.2

What's Changed

• Remove infores import by @sierra-moxon in #1327

Full Changelog: v3.4.1...v3.4.2

v3.4.1

Full Changelog: v3.4.0...v3.4.1

v3.4.0

What's Changed

• add properties for clinical wg per request in 1301, fixes #1301 by @sierra-moxon in #1317
• mappings for attribute server work by @sierra-moxon in #1316
• remove reachable from enum by @sierra-moxon in #1322
• Bump requests from 2.28.2 to 2.31.0 by @dependabot in #1319
• adding causitive and correlated gene to disease associations, fixes #1320, fixes #1321 by @sierra-moxon in #1323
• Bump requests from 2.28.2 to 2.31.0 by @dependabot in #1324
• update linkml version, update in prep for a release by @sierra-moxon in #1325
• partially fixes Feedback #178 by @sierra-moxon in #1318

Full Changelog: v3.3.4...v3.4.0