diff --git a/curation/README.rst b/curation/README.rst new file mode 100644 index 0000000..d9aabc4 --- /dev/null +++ b/curation/README.rst @@ -0,0 +1,14 @@ +Curation +======== +1. Generate a PubMed identifier list: + +.. code-block:: sh + + $ cat pubmeds.tsv | cut -f 1 | grep -e "^\d\+$" > pubmeds.txt + + +2. Generate curation sheet and pickles: + +.. code-block:: sh + + $ bel-enrichment from-pmids --pmids pubmeds.txt --output curation.tsv --pickle-file statements.pkl diff --git a/curation/pubmeds.txt b/curation/pubmeds.txt new file mode 100644 index 0000000..41ed8c0 --- /dev/null +++ b/curation/pubmeds.txt @@ -0,0 +1,15 @@ +PubMedID +19969070 +21387008 +25036103 +30063760 +21035514 +28116245 +28124620 +29417334 +26205378 +25407931 +24559646 +25534921 +X +X