Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

updates to bican_biolink and context #141

Open
djarecka opened this issue Jan 19, 2025 · 0 comments
Open

updates to bican_biolink and context #141

djarecka opened this issue Jan 19, 2025 · 0 comments
Assignees

Comments

@djarecka
Copy link
Collaborator

In order to proper change bican_biolink and context, there should be multiple changes:

  • bican_biolink_edit GA: should be triggered either by the changes in the yaml file or the changes to utils/bican_biolink_edit
  • changing utils/bican_biolink_edit.py so it removes type and use category only and maps to rdf:type
  • changing [genome_generate_other_formats.yaml](https://github.com/brain-bican/models/blob/main/.github/workflows/genome_generate_other_formats.yaml) (and others) to be triggered either by changes to the main yaml file or to the models they import
  • genome_generate_other_formats.yaml (and others) should start using the new reusable workflow with linkml 1.8.6, since it works fine for generating other formats
  • create additional script that edits context file to add category: @type (check more with linkml generator)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants