DESCRIPTION

Package: LSUx
Title: Cut rDNA Sequences Into Domains Using Covariance Models
Version: 0.99.8
Authors@R: 
    person(given = "Brendan",
           family = "Furneaux",
           role = c("aut", "cre"),
           email = "brendan.furneaux@gmail.com",
           comment = c(ORCID = "0000-0003-3522-7363"))
Description: LSUx is a tool to extract domains from rDNA using covariance models
    as implemented in the Infernal package.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports:
    magrittr,
    assertthat,
    Biostrings,
    ShortRead,
    dplyr,
    futile.logger,
    inferrnal (>= 0.99.8),
    IRanges,
    methods,
    purrr,
    rlang,
    stats,
    stringr,
    stringi,
    tibble,
    tidyr,
    tidyselect
Suggests:
    rITSx (>= 0.0.5),
    knitr,
    rmarkdown,
    covr,
    testthat (>= 2.1.0)
RoxygenNote: 7.3.2
biocViews:
    SequenceMatching,
    ThirdPartyClient,
    Metagenomics,
    HiddenMarkovModel,
    DNASeq,
    RNASeq,
    Annotation,
    Alignment,
    MultipleSequenceAlignment
VignetteBuilder: knitr
Remotes:
    brendanf/inferrnal,
    brendanf/rITSx
Depends: 
    R (>= 4.1)
Roxygen: list(markdown = TRUE)