NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(extract_LSU,MultipleAlignment)
S3method(extract_LSU,character)
S3method(extract_rf_region,XString)
S3method(extract_rf_region,character)
S3method(map_position,MultipleAlignment)
S3method(map_position,character)
S3method(protect_names,ShortRead)
S3method(protect_names,character)
S3method(protect_names,default)
S3method(repair_unmatched_secondary_structure,BString)
S3method(repair_unmatched_secondary_structure,character)
export(find_amplicon)
export(find_primer)
export(gap_fill)
export(lsux)
export(merge_5_8S)
export(repair_unmatched_secondary_structure)
export(truncate_alignment)
importClassesFrom(Biostrings,DNAStringSet)
importClassesFrom(Biostrings,QualityScaledDNAStringSet)
importClassesFrom(Biostrings,QualityScaledXStringSet)
importClassesFrom(ShortRead,ShortRead)
importClassesFrom(ShortRead,ShortReadQ)
importFrom(dplyr,.data)
importFrom(magrittr,"%$%")
importFrom(magrittr,"%>%")