README.Rmd

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output: github_document
---
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```{r setup, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```
# rITSx

This package is an interface to the
[ITSx](http://microbiology.se/software/itsx/) command-line utility from R.

## Installation

You can install the development version from [GitHub](https://github.com/) with:

``` r
# install.packages("devtools")
devtools::install_github("brendanf/rITSx")
```

The ITSx tool must be installed in order for `rITSx` to work. 
For current installation instructions, see http://microbiology.se/software/itsx/.

## Use