NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(add_derep_names,derep)
S3method(add_derep_names,list)
S3method(cluster_consensus,XStringSet)
S3method(cluster_consensus,character)
S3method(dadamap,derep)
S3method(dadamap,list)
S3method(extract_region,ShortRead)
S3method(extract_region,XStringSet)
S3method(extract_region,character)
S3method(extract_region,list)
S3method(seqhash,XStringSet)
S3method(seqhash,character)
S3method(summarize_sread,ShortReadQ)
S3method(summarize_sread,list)
export(add_derep_names)
export(cluster_consensus)
export(combine_bigmaps)
export(combine_derep)
export(dadamap)
export(extract_region)
export(has_alphabet)
export(map_or_consensus)
export(map_to_best_asv)
export(reconstruct)
export(seqhash)
export(summarize_sread)
import(utils)
importClassesFrom(Biostrings,DNAStringSet)
importClassesFrom(Biostrings,QualityScaledDNAStringSet)
importClassesFrom(Biostrings,QualityScaledXStringSet)
importClassesFrom(ShortRead,ShortRead)
importClassesFrom(ShortRead,ShortReadQ)
importFrom(assertthat,assert_that)
importFrom(futile.logger,flog.debug)
importFrom(futile.logger,flog.info)
importFrom(futile.logger,flog.namespace)
importFrom(futile.logger,flog.trace)
importFrom(magrittr,"%>%")
importFrom(rlang,.data)
importFrom(stringr,str_c)
importFrom(stringr,str_extract)
importFrom(stringr,str_replace)
importFrom(tibble,tibble)