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Hi, I am unable to load the geosketch module using the reticulate library in R. I ran both the reticulate and rsvd libraries, but I obtain the error: Error in py_module_import(module, convert = convert) ...
  • esehovic
  • 1
  • Opened 
    on Oct 17, 2024
  • #18

There s an error raising with numpy=2.0: AttributeError: ptp was removed from the ndarray class in NumPy 2.0. Use np.ptp(arr, ...) instead.
  • alexandregrimaldi
  • 1
  • Opened 
    on Sep 17, 2024
  • #17

I tried to install geosketch and replicate the mouse visualziation data as in the readme. After some issues with packages and installing (which ill not get into too) i ran and got this error Could not ...
  • danieled-csail
  • 2
  • Opened 
    on Jan 25, 2024
  • #16

Expected behavior During subsequent runs, I would expect to find different random seeds being used making it rare to see the same cell in multiple samples from adata. Observed behavior For several sketch ...
  • dburkhardt
  • 5
  • Opened 
    on Mar 2, 2021
  • #12

/usr/lib/python3.8/site-packages/sklearn/utils/deprecation.py:143: FutureWarning: The sklearn.cluster.k_means_ module is deprecated in version 0.22 and will be removed in version 0.24. The corresponding ...
  • dburkhardt
  • 2
  • Opened 
    on Mar 1, 2021
  • #11

Hey there, I m trying to generate identical results by using geosketch. But it seems that the result is hard to be replicated. I used set.seed() but it did not work. How could I make it? Joey
  • IMJoeyZhu
  • 1
  • Opened 
    on Oct 27, 2020
  • #9

Hi, I think this is a great method and I try to use it in my project. But when I ran the codes from example.R file, I noticed that sketch.indices can start from 0 and end at 999 (if there are 1000 cells ...
  • jcyang34
  • 2
  • Opened 
    on Jun 18, 2020
  • #8

I am looking at the data underlying Figure 2C, and I noticed that for the adult mouse brain data set, the macrophages are not actually the rarest cell type. They are something like the third-most rare ...
  • wsnoble
  • 2
  • Opened 
    on Nov 28, 2019
  • #7

Hi, I have been playing around with geosketch with the aim of speeding up the creation of large single cell reference panoramas with scanorama. I am using the first 20 components from PCA (in the Seurat ...
  • gdagstn
  • 2
  • Opened 
    on Nov 1, 2019
  • #6

I am seeing a mismatch between the count of rarest cell type reported in the paper and the one in the data tar file. The paper says In particular, we focused on 28 293T cells (0.66% of the total number ...
  • wsnoble
  • 1
  • Opened 
    on Sep 25, 2019
  • #5
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