issues Search Results · repo:brianhie/geosketch language:Python
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inbrianhie/geosketch (press backspace or delete to remove)Hi,
I am unable to load the geosketch module using the reticulate library in R. I ran both the reticulate and rsvd
libraries, but I obtain the error:
Error in py_module_import(module, convert = convert) ...
esehovic
- 1
- Opened on Oct 17, 2024
- #18
There s an error raising with numpy=2.0: AttributeError: ptp was removed from the ndarray class in NumPy 2.0. Use
np.ptp(arr, ...) instead.
alexandregrimaldi
- 1
- Opened on Sep 17, 2024
- #17
I tried to install geosketch and replicate the mouse visualziation data as in the readme.
After some issues with packages and installing (which ill not get into too) i ran and got this error Could not ...
danieled-csail
- 2
- Opened on Jan 25, 2024
- #16
Expected behavior During subsequent runs, I would expect to find different random seeds being used making it rare to see
the same cell in multiple samples from adata.
Observed behavior For several sketch ...
dburkhardt
- 5
- Opened on Mar 2, 2021
- #12
/usr/lib/python3.8/site-packages/sklearn/utils/deprecation.py:143: FutureWarning: The sklearn.cluster.k_means_ module is deprecated in version 0.22 and will be removed in version 0.24. The corresponding ...
dburkhardt
- 2
- Opened on Mar 1, 2021
- #11
Hey there,
I m trying to generate identical results by using geosketch. But it seems that the result is hard to be replicated. I
used set.seed() but it did not work. How could I make it?
Joey
IMJoeyZhu
- 1
- Opened on Oct 27, 2020
- #9
Hi,
I think this is a great method and I try to use it in my project.
But when I ran the codes from example.R file, I noticed that sketch.indices can start from 0 and end at 999 (if there
are 1000 cells ...
jcyang34
- 2
- Opened on Jun 18, 2020
- #8
I am looking at the data underlying Figure 2C, and I noticed that for the adult mouse brain data set, the macrophages
are not actually the rarest cell type. They are something like the third-most rare ...
wsnoble
- 2
- Opened on Nov 28, 2019
- #7
Hi,
I have been playing around with geosketch with the aim of speeding up the creation of large single cell reference
panoramas with scanorama.
I am using the first 20 components from PCA (in the Seurat ...
gdagstn
- 2
- Opened on Nov 1, 2019
- #6
I am seeing a mismatch between the count of rarest cell type reported in the paper and the one in the data tar file. The
paper says
In particular, we focused on 28 293T cells (0.66% of the total number ...
wsnoble
- 1
- Opened on Sep 25, 2019
- #5
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