From 57895fd74b5c878ae1ee02d3eca34864c3f01c7c Mon Sep 17 00:00:00 2001 From: Danny Park Date: Thu, 29 Apr 2021 21:49:41 -0400 Subject: [PATCH] convert all json map values to strings --- illumina.py | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/illumina.py b/illumina.py index ef5c5a38..01b34d7f 100755 --- a/illumina.py +++ b/illumina.py @@ -255,13 +255,13 @@ def main_illumina_demux(args): 'read_structure':picardOpts['read_structure'], 'indexes':str(samples.indexes), 'run_id':runinfo.get_run_id(), - 'lane':args.lane, - 'flowcell':runinfo.get_flowcell(), - 'lane_count':runinfo.get_lane_count(), - 'surface_count':runinfo.get_surface_count(), - 'swath_count':runinfo.get_swath_count(), - 'tile_count':runinfo.get_tile_count(), - 'total_tile_count':runinfo.tile_count(), + 'lane':str(args.lane), + 'flowcell':str(runinfo.get_flowcell()), + 'lane_count':str(runinfo.get_lane_count()), + 'surface_count':str(runinfo.get_surface_count()), + 'swath_count':str(runinfo.get_swath_count()), + 'tile_count':str(runinfo.get_tile_count()), + 'total_tile_count':str(runinfo.tile_count()), 'sequencer_model':runinfo.infer_sequencer_model(), }, outf, indent=2) @@ -280,7 +280,7 @@ def main_illumina_demux(args): # organize samplesheet metadata as json sample_meta = list(samples.get_rows()) for row in sample_meta: - row['lane'] = args.lane + row['lane'] = str(args.lane) if args.out_meta_by_sample: with open(args.out_meta_by_sample, 'wt') as outf: json.dump(dict((r['sample'],r) for r in sample_meta), outf, indent=2)