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Handle more date formats from RunInfo.xml #79

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dpark01 opened this issue Dec 13, 2022 · 0 comments
Open

Handle more date formats from RunInfo.xml #79

dpark01 opened this issue Dec 13, 2022 · 0 comments

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@dpark01
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dpark01 commented Dec 13, 2022

The new NovaSeq 6000 at Redeemer's University produces a different RunInfo.xml compared to those at the Broad Institute. They are getting this error from our illumina_demux step:

arrow.parser.ParserError: The date string seen in RunInfo.xml ('2022-11-11T21:19:06Z') did not match known Illumina formats: ['YYMMDD', 'YYYYMMDD', 'M/D/YYYY h:mm:ss A']

We will need to update our code to handle that date string.

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