v2.1.25

Hotfix for python typo

v2.1.24

• bugfix: in_dir now passed correctly in illumina.py flowcell_metadata [#63]
• additional flowcell/run metadata is now returned in the json output of illumina.py illumina_demux [#64]

v2.1.23

bump picard 2.22.2 to 2.24.0 (the actual last known working version)

v2.1.22

• hotfix: force Picard version to older 2.22.2 [#61]

v2.1.21

• add jinja2>=2.11.3 [#55]
• switch from picard-slim to full picard for reporting [#58]
• revert picard to v.2.22.2 while we sort out Novaseq bugs [#60]
• parse NextSeq 2000 datestring in RunInfo.xml [#59]
• add illumina.py flowcell_metadata command which infers the sequencer model from the run directory [#57]

v2.1.20

Update picard (new demux speedups), pysam, samtools, zstandard

v2.1.19

• bugfix in outlier barcode report for single-end reads

v2.1.18

• fix how the illumina_demux meta_by_sample array is indexed [#50]

v2.1.17

• add additional metadata output in json format from illumina_demux [#49]

v2.1.16

• update viral-baseimage 0.1.19 -> 0.1.20