From 19d9e13251a546e6e8db09e0bfd9f93325eff15f Mon Sep 17 00:00:00 2001
From: "Craig M. Hamel" <cmhamel32@gmail.com>
Date: Thu, 12 Oct 2023 23:02:57 -0400
Subject: [PATCH 1/5] adding a simple spack build that hopefully once I fix
 some things will bring exodus along with suitesparse with no troubles.

---
 spack.yaml | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)
 create mode 100644 spack.yaml

diff --git a/spack.yaml b/spack.yaml
new file mode 100644
index 0000000..5f3bf5a
--- /dev/null
+++ b/spack.yaml
@@ -0,0 +1,18 @@
+# This is a Spack Environment file.
+#
+# It describes a set of packages to be installed, along with
+# configuration settings.
+spack:
+  # add package specs to the `specs` list
+  specs:
+  - python
+  - py-pip
+  - py-pytest
+  - py-pytest-cov
+  - py-pytest-xdist
+  - py-scikit-sparse
+  - exodusii
+  view: true
+  concretizer:
+    unify: true
+

From 656ff91b0901314f812c428eb8dfa8917903dafb Mon Sep 17 00:00:00 2001
From: "Craig M. Hamel" <cmhamel32@gmail.com>
Date: Fri, 13 Oct 2023 10:18:59 -0400
Subject: [PATCH 2/5] updating spack to a build for exodus that works on ubuntu
 22 with gcc 11.

---
 .gitignore | 7 ++++++-
 spack.yaml | 2 +-
 2 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/.gitignore b/.gitignore
index c449b92..dbb5dcc 100644
--- a/.gitignore
+++ b/.gitignore
@@ -17,4 +17,9 @@ venv/
 
 # IDE files
 .idea/
-.vscode/
\ No newline at end of file
+.vscode/
+
+# outputs from tests
+*.png
+loads
+.coverage
diff --git a/spack.yaml b/spack.yaml
index 5f3bf5a..29b4842 100644
--- a/spack.yaml
+++ b/spack.yaml
@@ -11,7 +11,7 @@ spack:
   - py-pytest-cov
   - py-pytest-xdist
   - py-scikit-sparse
-  - exodusii
+  - exodusii+fortran
   view: true
   concretizer:
     unify: true

From 98edffbb805eb0a3d0f83b51888f3f56243deb6a Mon Sep 17 00:00:00 2001
From: "Craig M. Hamel" <cmhamel32@gmail.com>
Date: Fri, 13 Oct 2023 13:10:02 -0400
Subject: [PATCH 3/5] removing exodus and giving up with that on this attempt.
 That python library is a real nightmare and not shipped properly.

---
 .gitignore | 2 ++
 spack.yaml | 1 -
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/.gitignore b/.gitignore
index dbb5dcc..682140e 100644
--- a/.gitignore
+++ b/.gitignore
@@ -23,3 +23,5 @@ venv/
 *.png
 loads
 .coverage
+spack.lock
+.spack-env/
diff --git a/spack.yaml b/spack.yaml
index 29b4842..8eff1fe 100644
--- a/spack.yaml
+++ b/spack.yaml
@@ -11,7 +11,6 @@ spack:
   - py-pytest-cov
   - py-pytest-xdist
   - py-scikit-sparse
-  - exodusii+fortran
   view: true
   concretizer:
     unify: true

From 80e1db1a309e7dd82372c97788c0c1f08e28552a Mon Sep 17 00:00:00 2001
From: "Craig M. Hamel" <cmhamel32@gmail.com>
Date: Fri, 13 Oct 2023 13:15:36 -0400
Subject: [PATCH 4/5] adding instruction for a spack build to README.md

---
 README.md | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/README.md b/README.md
index bdb5f32..cf5b1fe 100644
--- a/README.md
+++ b/README.md
@@ -124,6 +124,31 @@ pip=/usr/local/opt/python/bin/pip3
 SUITESPARSE_INCLUDE_DIR=$INC SUITESPARSE_LIBRARY_DIR=$LIB $pip install -e . sparse
 ```
 
+## Installation using spack
+Utilizing spack can alleviate some of the steps and headaches encountered in build described above to use spack to build optimism in a development environment, use the following instructions.
+
+If you don't already have spack, you can clone the git repo using the following command
+```
+git clone https://github.com/spack/spack.git
+```
+
+Once you have spack you can do the following in the optimism directory
+```
+source /path/to/spack/share/spack/setup-env.sh
+spack env activate .
+spack concretize -f
+spack install
+```
+
+The above will install all dependencies needed for optimism (including suite sparse and testing dependencies).
+
+Finally, you can install optimism via pip with
+```
+pip install -e .[sparse,test]
+```
+
+Note that in each new terminal you will need to source the ```setup-env.sh``` script from spack and activate the env in the optimism folder.
+
 ## Citing OptimiSM
 
 If you use OptimiSM in your research, please cite

From 7c296e880081f7191bb44156cde5b3f853e8c42a Mon Sep 17 00:00:00 2001
From: cmhamel <31457225+cmhamel@users.noreply.github.com>
Date: Fri, 3 Nov 2023 13:35:01 -0400
Subject: [PATCH 5/5] Update ci-build.yml

Removing 3.7 and adding 3.10
---
 .github/workflows/ci-build.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/ci-build.yml b/.github/workflows/ci-build.yml
index d277bfa..3504ebf 100644
--- a/.github/workflows/ci-build.yml
+++ b/.github/workflows/ci-build.yml
@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.7", "3.8", "3.9"]
+        python-version: ["3.8", "3.9", "3.10"]
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python ${{ matrix.python-version }}