rapidfuzz not present in bap Python package dependencies

[aksarkar]

bap/setup.py

Line 7 in 44061cd

dependencies = ['biopython','fuzzysearch','click', 'pytest', 'snakemake', 'optparse-pretty', 'multiprocess', 'regex', 'pysam', 'ruamel.yaml', 'biopython']

This lead to a missing dependency in our internally built conda package metadata that wasn't discovered until runtime.

[caleblareau]

thanks! is the fix as simple as adding this to the line that you noted?

[aksarkar]

Yes, that should fix the issue.

The issue also affects the installation instructions given in the wiki, since pip install bap-atac does not pull in rapidfuzz either, and then bap-barcode fails silently.