DESCRIPTION

Package: claman
Type: Package
Title: Streamlined Analysis of Metabolomics and Lipidomics Data
Version: 1.0.0
Authors@R: c(
    person(
      given = "Sean",
      family = "Hackett",
      email = "sean@calicolabs.com",
      role = c("aut", "cre"),
      comment = c(ORCID = "0000-0002-9553-4341")
      ),
    person(
      given = "Phil",
      family = "Seitzer",
      email = "phillipseitzer@calicolabs.com",
      role = "aut"
      ),
    person(
      given = "Alireza",
      family = "Delfarah",
      email = "delfarah@calicolabs.com",
      role = "aut"
      ),
    person(
      given = "Calico Life Sciences LLC",
      role = c("cph", "fnd")
      )
    )
Maintainer: Sean Hackett <sean@calicolabs.com>
Description: Provides a suite of methods for processing and visualizing LC-MS data.
    (1) Converting mzrollDB SQL objects into mzroll_list summaries of peaks (measurements), samples and peakgroups (features).
    (2) Adding metadata about experimental design to samples.
    (3) Normalizing and filtering abundances.
    (4) Exploratory visualization using heatmaps.
    (5) Basic feature-wise statistical analysis using regression.
    (6) Summary plots of metabolite/lipids of interest.
License: MIT + file LICENSE
Depends: R (>= 3.1.0)
Imports: broom,
    checkmate,
    DBI,
    debugr,
    dplyr,
    ggplot2,
    glue,
    purrr,
    readr,
    reshape2,
    rlang,
    romic (>= 1.0.6),
    RSQLite,
    stringr,
    tibble,
    tidyr (>= 1.0.0)
Suggests: dbplyr,
    fgsea,
    grDevices,
    hexbin,
    kableExtra,
    knitr,
    lubridate,
    plotly,
    qvalue,
    rmarkdown,
    testthat
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
VignetteBuilder: knitr