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DESCRIPTION
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Package: sear
Title: Simple (effin') enrichment analysis in R
Version: 1.0
Authors@R: person("Casey", "Shannon", email = "[email protected]", role = c("aut", "cre"))
Description: A package for simple enrichment analysis using: 1.MSigDB:
Subramanian, Aravind, et al. "Gene set enrichment analysis: a knowledge-based
approach for interpreting genome-wide expression profiles." Proceedings of the
National Academy of Sciences of the United States of America 102.43 (2005):
15545-15550. 2.Blood Transciptome Modules (BTM): Li, Shuzhao, et al. "Molecular
signatures of antibody responses derived from a systems biology study of five
human vaccines." Nature immunology 15.2 (2014): 195-204 3.Tissue Enrichment:
Benita, Yair, et al. "Gene enrichment profiles reveal T-cell development,
differentiation, and lineage-specific transcription factors including ZBTB25 as
a novel NF-AT repressor." Blood 115.26 (2010): 5376-5384.
Depends:
R (>= 4.1)
License: GPL-3 | file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Imports:
dplyr,
purrr,
tibble,
magrittr,
RColorBrewer,
stats,
utils
Suggests:
testthat,
networkD3
RoxygenNote: 7.2.3