diff --git a/main.nf b/main.nf index 1679f1e..153372c 100755 --- a/main.nf +++ b/main.nf @@ -137,7 +137,7 @@ process step2 { if [ "${FILETYPE}" == "BAM" ]; then mv done_wget/*.bam* "done_wget/${SAMPLE}.bam" - elif [ "${FILETYPE}" == "GZ1" ] || [ [ "${FILETYPE}" == "GZ2" ]; then + elif [ "${FILETYPE}" == "GZ1" ] || [ "${FILETYPE}" == "GZ2" ]; then echo "need to do move fastqs to correct extension too but need to see how fastqs are passed to metadata" echo "that could change how this process works for fastqs" fi