diff --git a/README.rst b/README.rst index 3c3e8fae3..381b599bd 100644 --- a/README.rst +++ b/README.rst @@ -35,7 +35,7 @@ free to give it a go:: # once the installation is finished, enable the conda environment as requested by the installation script # NB: you probably want to automate this by adding the instructions below to your .bashrc - source /conda-install/etc/profile.d/conda.sh cgat-f + source /conda-install/etc/profile.d/conda.sh conda activate base conda activate cgat-f diff --git a/doc/InstallingPipelines.rst b/doc/InstallingPipelines.rst index 477c74fbd..5f79dbea3 100644 --- a/doc/InstallingPipelines.rst +++ b/doc/InstallingPipelines.rst @@ -42,7 +42,7 @@ Here are the steps:: # once the installation is finished, enable the conda environment as requested by the installation script: # NB: you probably want to automate this by adding the instructions below to your .bashrc - source /conda-install/etc/profile.d/conda.sh cgat-f + source /conda-install/etc/profile.d/conda.sh conda activate base conda activate cgat-f diff --git a/install-CGAT-tools.sh b/install-CGAT-tools.sh index b5e113b74..2ce9e0f44 100755 --- a/install-CGAT-tools.sh +++ b/install-CGAT-tools.sh @@ -396,7 +396,7 @@ if [[ -z ${TRAVIS_INSTALL} ]] ; then echo " The code successfully installed!" echo echo " To activate the CGAT environment type: " - echo " $ source $CONDA_INSTALL_DIR/etc/profile.d/conda.sh $CONDA_INSTALL_ENV" + echo " $ source $CONDA_INSTALL_DIR/etc/profile.d/conda.sh" echo " $ conda activate base" echo " $ conda activate $CONDA_INSTALL_ENV" [[ $INSTALL_PRODUCTION ]] && echo " cgatflow --help"