ProtocolTemplate.Rmd

# Protocol template {#ProtocolTemplate}

1. Table of contents	
2. List of abbreviations	
3. Abstract	
4. Amendments and Updates	
5. Milestones	
6. Rationale and Background	
7. Study Objectives	
    - Primary Hypotheses	
    - Secondary Hypotheses	
    - Primary Objectives	
    - Secondary Objectives	
8. Research methods	
    - Study Design	
    - Data Source(s)	
    - Study population	
    - Exposures	
    - Outcomes	
    - Covariates	
9. Data Analysis Plan	
    - Calculation of time-at risk	
    - Model Specification	
    - Pooling effect estimates across databases	
    - Analyses to perform	
    - Output	
    - Evidence Evaluation	
10. Study Diagnostics	
    - Sample Size and Study Power	
    - Cohort Comparability 	
    - Systematic Error Assessment 	
11.	Strengths and Limitations of the Research Methods	
12.	Protection of Human Subjects	
13.	Management and Reporting of Adverse Events and Adverse Reactions	
14.	Plans for Disseminating and Communicating Study Results	
15.	Appendix: Negative controls	
16.	References