diff --git a/.infra/prod/values.yaml b/.infra/prod/values.yaml index b4e992de8..1402323f8 100644 --- a/.infra/prod/values.yaml +++ b/.infra/prod/values.yaml @@ -5,7 +5,7 @@ stack: annotations: "eks.amazonaws.com/role-arn": arn:aws:iam::231426846575:role/data_portal_prod_explorer image: - tag: sha-3883f979 + tag: sha-8835a2e0 replicaCount: 3 resources: limits: diff --git a/.infra/staging/values.yaml b/.infra/staging/values.yaml index 807665e0b..3a9039385 100644 --- a/.infra/staging/values.yaml +++ b/.infra/staging/values.yaml @@ -5,7 +5,7 @@ stack: annotations: "eks.amazonaws.com/role-arn": arn:aws:iam::699936264352:role/data_portal_staging_explorer image: - tag: sha-3883f979 + tag: sha-8835a2e0 replicaCount: 1 resources: limits: diff --git a/.release-please-manifest.json b/.release-please-manifest.json index 2c63c0851..11fea0fb2 100644 --- a/.release-please-manifest.json +++ b/.release-please-manifest.json @@ -1,2 +1 @@ -{ -} +{".":"1.0.0"} diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 000000000..9c4f11880 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,272 @@ +# Changelog + +## 1.0.0 (2024-06-27) + + +### Features + +* 70 add portal collection homepage to /config ([#83](https://github.com/chanzuckerberg/single-cell-explorer/issues/83)) ([8e0dd91](https://github.com/chanzuckerberg/single-cell-explorer/commit/8e0dd912eace8f4b9a5f6f369a6279260e59a18d)) +* 88 add dataset_id to the metadata endpoint ([#93](https://github.com/chanzuckerberg/single-cell-explorer/issues/93)) ([ae60d1b](https://github.com/chanzuckerberg/single-cell-explorer/commit/ae60d1bf609b620d1b0b80ab6f1759a0d6e07f4d)) +* Add a Github Action that automatically closes stale PRs. ([#647](https://github.com/chanzuckerberg/single-cell-explorer/issues/647)) ([f15b4db](https://github.com/chanzuckerberg/single-cell-explorer/commit/f15b4dbddf24e637a7e983ddd92ae9f3ce10fee1)) +* add back navbar to all instances regardless of dataset metadata ([#883](https://github.com/chanzuckerberg/single-cell-explorer/issues/883)) ([4ca479d](https://github.com/chanzuckerberg/single-cell-explorer/commit/4ca479d5bf0f5f13dc815a84d4b757d1da6193b7)) +* add cellxgene schema 3.0.0 fields to Standard Categories ([#412](https://github.com/chanzuckerberg/single-cell-explorer/issues/412)) ([b265fcf](https://github.com/chanzuckerberg/single-cell-explorer/commit/b265fcf24d73e90d077cfe84b1120c95e098f53b)) +* add cellxgene schema 3.0.0 fields to Standard Categories ([#412](https://github.com/chanzuckerberg/single-cell-explorer/issues/412)) ([#486](https://github.com/chanzuckerberg/single-cell-explorer/issues/486)) ([6d25ccc](https://github.com/chanzuckerberg/single-cell-explorer/commit/6d25ccc852cc8909c9f2867afc84cba558b1b7df)) +* Add correlation ids to logs to improve debugging ([#606](https://github.com/chanzuckerberg/single-cell-explorer/issues/606)) ([2540fd9](https://github.com/chanzuckerberg/single-cell-explorer/commit/2540fd9b52769d4c3d01f41db06675710a482653)) +* add deployed_version endpoint ([#588](https://github.com/chanzuckerberg/single-cell-explorer/issues/588)) ([64b4979](https://github.com/chanzuckerberg/single-cell-explorer/commit/64b4979cf9f14d9e35a13db3d7d4121a0783f8c8)) +* add DOCUMENTATION_CLICK_NAV for Documentation click ([#546](https://github.com/chanzuckerberg/single-cell-explorer/issues/546)) ([4d456b5](https://github.com/chanzuckerberg/single-cell-explorer/commit/4d456b5f5bf9f82af92455c54a3a2a703c557726)) +* add feature flags to explorer ([#769](https://github.com/chanzuckerberg/single-cell-explorer/issues/769)) ([b50116e](https://github.com/chanzuckerberg/single-cell-explorer/commit/b50116e50571fcb8848e9dd4afa6684b04ae54b7)) +* add geneset initialization ([#803](https://github.com/chanzuckerberg/single-cell-explorer/issues/803)) ([0d204de](https://github.com/chanzuckerberg/single-cell-explorer/commit/0d204de5f1299667e35cc9b1ff3717ede390fc2b)) +* add hotkeys for undo redo and remove buttons ([#467](https://github.com/chanzuckerberg/single-cell-explorer/issues/467)) ([fafc539](https://github.com/chanzuckerberg/single-cell-explorer/commit/fafc53909476efe089362ef64de9e83f973f2e11)) +* add mypy to the server/common/utils directory ([#672](https://github.com/chanzuckerberg/single-cell-explorer/issues/672)) ([39b088d](https://github.com/chanzuckerberg/single-cell-explorer/commit/39b088d610158594827f761472da7ee8ba53d3e9)) +* add new api rule for cellguide cxgs ([#777](https://github.com/chanzuckerberg/single-cell-explorer/issues/777)) ([790682b](https://github.com/chanzuckerberg/single-cell-explorer/commit/790682bf5cb82c124bb0ef35f61f6889fa5b77cd)) +* add publisher_metadata to the dataset metadata endpoint ([#224](https://github.com/chanzuckerberg/single-cell-explorer/issues/224)) ([24ba6e5](https://github.com/chanzuckerberg/single-cell-explorer/commit/24ba6e5e6d22d87481ccca6889964f299cdebf3b)) +* add quick gene lookup functionality ([#2250](https://github.com/chanzuckerberg/single-cell-explorer/issues/2250)) ([82de417](https://github.com/chanzuckerberg/single-cell-explorer/commit/82de4178d99e15c3f00cf4f4e3c3a3b02eb7bbe2)) +* add some structured support for mocking the dataset-metadata endpoint ([#691](https://github.com/chanzuckerberg/single-cell-explorer/issues/691)) ([d95b90d](https://github.com/chanzuckerberg/single-cell-explorer/commit/d95b90d8fcbbe0dabaebad0f4c5c681f1c897970)) +* added add-gene-and-* analytics for issue 275 ([#283](https://github.com/chanzuckerberg/single-cell-explorer/issues/283)) ([21f0739](https://github.com/chanzuckerberg/single-cell-explorer/commit/21f073982c048cc14031b8b70051d2a105a0ef39)) +* **analytics:** 1631 Add analytics ([#249](https://github.com/chanzuckerberg/single-cell-explorer/issues/249)) ([8af586a](https://github.com/chanzuckerberg/single-cell-explorer/commit/8af586a9cdb94d6d1458f9090dcf77495bd81e86)) +* Bump max zoom from 12 to 80 ([#961](https://github.com/chanzuckerberg/single-cell-explorer/issues/961)) ([1859de5](https://github.com/chanzuckerberg/single-cell-explorer/commit/1859de5c44e75ab6b328e0f658afe2873277b9f8)) +* **census-spotlight:** update navbar to new layout ([#677](https://github.com/chanzuckerberg/single-cell-explorer/issues/677)) ([9027420](https://github.com/chanzuckerberg/single-cell-explorer/commit/90274204b15ea3636515ddd7b90a9d375a7ed455)) +* dataset metadata endpoint ([#64](https://github.com/chanzuckerberg/single-cell-explorer/issues/64)) ([6536f05](https://github.com/chanzuckerberg/single-cell-explorer/commit/6536f050f98894008986371892522c972901838c)) +* Deep zoom ([#929](https://github.com/chanzuckerberg/single-cell-explorer/issues/929)) ([164aa76](https://github.com/chanzuckerberg/single-cell-explorer/commit/164aa767604c12f02de4b2e3d88631780cf038e0)) +* differential expression performance improvements ([#234](https://github.com/chanzuckerberg/single-cell-explorer/issues/234)) ([1e9965a](https://github.com/chanzuckerberg/single-cell-explorer/commit/1e9965aa96139e7f3b41ff6035b6dc1dfd5ed91b)) +* diffexp returns two genesets ([#2230](https://github.com/chanzuckerberg/single-cell-explorer/issues/2230)) ([28b526b](https://github.com/chanzuckerberg/single-cell-explorer/commit/28b526b3fc75a04c03dea29093e5de29b5bc6e01)) +* **download:** include a continuous legend in image downloads ([#878](https://github.com/chanzuckerberg/single-cell-explorer/issues/878)) ([c44d9d9](https://github.com/chanzuckerberg/single-cell-explorer/commit/c44d9d9fa56ee20a742cfc47cac3b2238bb116b5)) +* drop int64 fields from cxg_schema in the obs array ([#653](https://github.com/chanzuckerberg/single-cell-explorer/issues/653)) ([7a96def](https://github.com/chanzuckerberg/single-cell-explorer/commit/7a96def62af7201d9d1597f37e3109192c185fcb)) +* enable image capture and download of graph ([#817](https://github.com/chanzuckerberg/single-cell-explorer/issues/817)) ([c00d3ab](https://github.com/chanzuckerberg/single-cell-explorer/commit/c00d3abc2b38c4e097f3debe12da6dc74aef8c89)) +* Enable permissions to support happy shell ([#349](https://github.com/chanzuckerberg/single-cell-explorer/issues/349)) ([acd8932](https://github.com/chanzuckerberg/single-cell-explorer/commit/acd8932ffe09d980d57c7ab50b12b05816aa2709)) +* exclude observation join id from standard and author categories ([#674](https://github.com/chanzuckerberg/single-cell-explorer/issues/674)) ([8661a4e](https://github.com/chanzuckerberg/single-cell-explorer/commit/8661a4e03a78b4a69a2c62f4e83a08d32b6441c1)) +* fix explorer API for handling subpaths in S3 ([#792](https://github.com/chanzuckerberg/single-cell-explorer/issues/792)) ([4ba67ac](https://github.com/chanzuckerberg/single-cell-explorer/commit/4ba67acd5b3f203f68ec332fd2b75c02a421588b)) +* frontend geneset validation ([#2258](https://github.com/chanzuckerberg/single-cell-explorer/issues/2258)) ([b714c18](https://github.com/chanzuckerberg/single-cell-explorer/commit/b714c18e7543d167198d99b82a8a963a27504a9e)) +* gene info cards ([#298](https://github.com/chanzuckerberg/single-cell-explorer/issues/298)) ([8cf1341](https://github.com/chanzuckerberg/single-cell-explorer/commit/8cf1341cf3926631a4f5c71b2b920a8f3ef63e5e)) +* **geneset:** save diff exp result as geneset ([#2216](https://github.com/chanzuckerberg/single-cell-explorer/issues/2216)) ([a4050f1](https://github.com/chanzuckerberg/single-cell-explorer/commit/a4050f10e19f1deb3cc29f9b7b4d85a82cb36863)) +* **img:** capture graph as a image for testing and user download ([#796](https://github.com/chanzuckerberg/single-cell-explorer/issues/796)) ([bb2735f](https://github.com/chanzuckerberg/single-cell-explorer/commit/bb2735fa3489592bf2e973c7644411b449e80265)) +* include a legend image for categorical colorby ([#884](https://github.com/chanzuckerberg/single-cell-explorer/issues/884)) ([332644f](https://github.com/chanzuckerberg/single-cell-explorer/commit/332644f25e8b11a08aa79269bb691550749cb5a7)) +* include localhost and canary env as allowed origins for staging backend ([#71](https://github.com/chanzuckerberg/single-cell-explorer/issues/71)) ([8758ce5](https://github.com/chanzuckerberg/single-cell-explorer/commit/8758ce549cfd524b01bb06c273f791d5abe48328)) +* increase zoom limits by a factor of 4 ([#577](https://github.com/chanzuckerberg/single-cell-explorer/issues/577)) ([db5051d](https://github.com/chanzuckerberg/single-cell-explorer/commit/db5051d404cdb42d459208c64f6e5669952fad1e)) +* move continuous fields to the dataset drawer if there is a single value for all cells ([#918](https://github.com/chanzuckerberg/single-cell-explorer/issues/918)) ([055b24d](https://github.com/chanzuckerberg/single-cell-explorer/commit/055b24d8e68f8f017418414dd7084cf8a9bc24c6)) +* Newsletter Banner ([#601](https://github.com/chanzuckerberg/single-cell-explorer/issues/601)) ([d99f066](https://github.com/chanzuckerberg/single-cell-explorer/commit/d99f06692ceadd328b85091d4a9d801c56bf1ddb)) +* remove author and standard categories for cellguide cxgs and add singletons back ([#795](https://github.com/chanzuckerberg/single-cell-explorer/issues/795)) ([67502f6](https://github.com/chanzuckerberg/single-cell-explorer/commit/67502f68e319d590cc4fd06860122d6fabeefc7c)) +* setup explorer on argus ([#886](https://github.com/chanzuckerberg/single-cell-explorer/issues/886)) ([a6ecee7](https://github.com/chanzuckerberg/single-cell-explorer/commit/a6ecee79c683a182861daa87c4d3f43e9d9b9003)) +* side by side ([#977](https://github.com/chanzuckerberg/single-cell-explorer/issues/977)) ([bf2babc](https://github.com/chanzuckerberg/single-cell-explorer/commit/bf2babc66d36dd57e9dd381bdfe66393b5dfa6bd)) +* Spatial Mode User Story 1 ([#805](https://github.com/chanzuckerberg/single-cell-explorer/issues/805)) ([df7d42d](https://github.com/chanzuckerberg/single-cell-explorer/commit/df7d42d8f225fd16f8a7da299fdc4028ab8ae9cf)) +* spatial refactor ([#852](https://github.com/chanzuckerberg/single-cell-explorer/issues/852)) ([ffd7281](https://github.com/chanzuckerberg/single-cell-explorer/commit/ffd7281b7b96a4cbc0bd0ab0984774ca4c192ed2)) +* **spatial:** analytics ([#974](https://github.com/chanzuckerberg/single-cell-explorer/issues/974)) ([9986a37](https://github.com/chanzuckerberg/single-cell-explorer/commit/9986a379b38553919645b4c71da1220879991f1f)) +* split new cellguide cxg regex into another constant ([#786](https://github.com/chanzuckerberg/single-cell-explorer/issues/786)) ([b0e2793](https://github.com/chanzuckerberg/single-cell-explorer/commit/b0e2793bcb42d0147de2fe1b682032216b9fbb71)) +* **wmg:** 3701 Remove beta tag ([#545](https://github.com/chanzuckerberg/single-cell-explorer/issues/545)) ([4028070](https://github.com/chanzuckerberg/single-cell-explorer/commit/402807059a93faa0cd3575e2830aaa70842f2675)) + + +### Bug Fixes + +* 1001 No download image for minimized panel ([#1004](https://github.com/chanzuckerberg/single-cell-explorer/issues/1004)) ([db0944e](https://github.com/chanzuckerberg/single-cell-explorer/commit/db0944e1944345ef48b16fbadc39a300cfd94a46)) +* 104 dataframe histogram memoization ([#116](https://github.com/chanzuckerberg/single-cell-explorer/issues/116)) ([b0360b8](https://github.com/chanzuckerberg/single-cell-explorer/commit/b0360b89225655e5d9946d04733be2be3ffa6b8f)) +* 156 obsolete browsers ([#159](https://github.com/chanzuckerberg/single-cell-explorer/issues/159)) ([656b63e](https://github.com/chanzuckerberg/single-cell-explorer/commit/656b63ef2fe885d2fa5f339ac9a4b4f492d09969)) +* 270 analytics expand events ([#271](https://github.com/chanzuckerberg/single-cell-explorer/issues/271)) ([6a75d87](https://github.com/chanzuckerberg/single-cell-explorer/commit/6a75d8758e9418c444e9fbbbf4ff5125aa66cbd8)) +* 73 - add 2.0.0 to the recognized FE versions ([#74](https://github.com/chanzuckerberg/single-cell-explorer/issues/74)) ([a16acc9](https://github.com/chanzuckerberg/single-cell-explorer/commit/a16acc9e2b49144668c0ecb43d152260fe406d3b)) +* 84 Do not cache index.html ([#86](https://github.com/chanzuckerberg/single-cell-explorer/issues/86)) ([8bc3e06](https://github.com/chanzuckerberg/single-cell-explorer/commit/8bc3e060b1d8605aa6467703b8f0bc96ba07460b)) +* 858 jason bug 2 ([#948](https://github.com/chanzuckerberg/single-cell-explorer/issues/948)) ([6beebe8](https://github.com/chanzuckerberg/single-cell-explorer/commit/6beebe88033fd1ad86e75fce5f0044bafbc68c47)) +* 936 embedding cell count ([#942](https://github.com/chanzuckerberg/single-cell-explorer/issues/942)) ([65d1281](https://github.com/chanzuckerberg/single-cell-explorer/commit/65d128156b17a70ec15b6b84059352c96ebde2ee)) +* add census link in explorer ([#625](https://github.com/chanzuckerberg/single-cell-explorer/issues/625)) ([202a90f](https://github.com/chanzuckerberg/single-cell-explorer/commit/202a90f2c5ff243c69c0f0abd7258aae8fa566ea)) +* add max_age to immutable caches ([#205](https://github.com/chanzuckerberg/single-cell-explorer/issues/205)) ([52579c5](https://github.com/chanzuckerberg/single-cell-explorer/commit/52579c53dae88253d4fb4b6e87257b9fa008e421)) +* add missing ECS folder ([#526](https://github.com/chanzuckerberg/single-cell-explorer/issues/526)) ([7d91243](https://github.com/chanzuckerberg/single-cell-explorer/commit/7d9124355effe6e9ab073ecb709a2d3d8f146b6e)) +* add placeholder test so suite doesn't fail ([#2233](https://github.com/chanzuckerberg/single-cell-explorer/issues/2233)) ([7ed53c0](https://github.com/chanzuckerberg/single-cell-explorer/commit/7ed53c0f5b5db9efa89890875441258aa49679a4)) +* add screenCap to cached props for diffing during render check ([#835](https://github.com/chanzuckerberg/single-cell-explorer/issues/835)) ([056704f](https://github.com/chanzuckerberg/single-cell-explorer/commit/056704ffc41ccf8a93802d79f855cc33a7409bc7)) +* Add services to happy config ([#409](https://github.com/chanzuckerberg/single-cell-explorer/issues/409)) ([90f976e](https://github.com/chanzuckerberg/single-cell-explorer/commit/90f976eb1de7a94daabc3b0af6198c5ef463a470)) +* Allow Connection to Hubspot ([#633](https://github.com/chanzuckerberg/single-cell-explorer/issues/633)) ([b8f9f5e](https://github.com/chanzuckerberg/single-cell-explorer/commit/b8f9f5e7b016ba4281b3f4bec131da6ecae52f5f)) +* **analytics:** [#262](https://github.com/chanzuckerberg/single-cell-explorer/issues/262) adds event payloads ([#264](https://github.com/chanzuckerberg/single-cell-explorer/issues/264)) ([be75ba1](https://github.com/chanzuckerberg/single-cell-explorer/commit/be75ba174b8b416cc6044bc1d063deb9d1be327e)) +* Assume NavBar is present when calculating height of explorer initially. ([#502](https://github.com/chanzuckerberg/single-cell-explorer/issues/502)) ([92cbcf0](https://github.com/chanzuckerberg/single-cell-explorer/commit/92cbcf0f5d8fb0d9fc0ddc36c059e64c6b12955b)) +* Assume navbar present by default and only remove padding if dataset metadata errors ([#517](https://github.com/chanzuckerberg/single-cell-explorer/issues/517)) ([fde15ae](https://github.com/chanzuckerberg/single-cell-explorer/commit/fde15ae6f8a6aa1fa850eaebaf716eb0c295e6e5)) +* change path for static font files ([#370](https://github.com/chanzuckerberg/single-cell-explorer/issues/370)) ([c93f3b3](https://github.com/chanzuckerberg/single-cell-explorer/commit/c93f3b31f5397d2be5c3bc4150542e17d3299497)) +* collection_url prefix in dataset-metadata ([#140](https://github.com/chanzuckerberg/single-cell-explorer/issues/140)) ([9558db3](https://github.com/chanzuckerberg/single-cell-explorer/commit/9558db346972932d4b759ede44b25cfbd7854a62)) +* Continuous legend properly disappears after coloring by continuous metadata and subsequently coloring by anything else ([#513](https://github.com/chanzuckerberg/single-cell-explorer/issues/513)) ([fa59fa5](https://github.com/chanzuckerberg/single-cell-explorer/commit/fa59fa5a8d6ec651b00fa82edbb47a01b62c6acc)) +* convert sparse numpy matrix to ndarray ([#2271](https://github.com/chanzuckerberg/single-cell-explorer/issues/2271)) ([5f976cc](https://github.com/chanzuckerberg/single-cell-explorer/commit/5f976cc4fc6d8c9a012f2325bd6844c63cf4df0a)) +* Correctly load image underlay when initial layout is spatial ([#859](https://github.com/chanzuckerberg/single-cell-explorer/issues/859)) ([2cace76](https://github.com/chanzuckerberg/single-cell-explorer/commit/2cace76a8ded2ea42034d5a6850491dc90f5863b)) +* dataset metadata response parsing ([#43](https://github.com/chanzuckerberg/single-cell-explorer/issues/43)) ([084dc5c](https://github.com/chanzuckerberg/single-cell-explorer/commit/084dc5c7d24124b46d82bd646ea31dbbd1a1b93d)) +* dataset-metadata private collections call ([#127](https://github.com/chanzuckerberg/single-cell-explorer/issues/127)) ([79e4424](https://github.com/chanzuckerberg/single-cell-explorer/commit/79e4424446eaf20df4e9b8e383f51ed9364bec5c)) +* decrease the topN count explicitly on hosted ([#2320](https://github.com/chanzuckerberg/single-cell-explorer/issues/2320)) ([bbf1950](https://github.com/chanzuckerberg/single-cell-explorer/commit/bbf19506245d5d3d13ce7a3fce8ced65a56601b0)) +* disable FE auth testing on compatibility tests ([#2377](https://github.com/chanzuckerberg/single-cell-explorer/issues/2377)) ([925b785](https://github.com/chanzuckerberg/single-cell-explorer/commit/925b785b1fa6f27ee10e0a265a2a14427d9bf165)) +* disable portion of noisy env screenshots ([#75](https://github.com/chanzuckerberg/single-cell-explorer/issues/75)) ([47b206a](https://github.com/chanzuckerberg/single-cell-explorer/commit/47b206a59bf741155a1cb9e39bf498d81685a03e)) +* Docker-compose specify platform to get around arm vs amd arch mismatches ([#241](https://github.com/chanzuckerberg/single-cell-explorer/issues/241)) ([5c2a4b3](https://github.com/chanzuckerberg/single-cell-explorer/commit/5c2a4b349ea378ab14ab9c627b536c8205cb94eb)) +* **docker:** explicitly install node ([#307](https://github.com/chanzuckerberg/single-cell-explorer/issues/307)) ([c3d4fd8](https://github.com/chanzuckerberg/single-cell-explorer/commit/c3d4fd89f10033b45c968cb5b60aee979263dab6)) +* **docker:** fix script url ([#308](https://github.com/chanzuckerberg/single-cell-explorer/issues/308)) ([a05db9d](https://github.com/chanzuckerberg/single-cell-explorer/commit/a05db9dc8be858780d8026c08ecec24f787a0670)) +* don't run lint with `--fix` on push tests ([#2273](https://github.com/chanzuckerberg/single-cell-explorer/issues/2273)) ([1998c0a](https://github.com/chanzuckerberg/single-cell-explorer/commit/1998c0ad636dc8d03833ecb790281f21e9d9c555)) +* dont cache dataset metadata ([#177](https://github.com/chanzuckerberg/single-cell-explorer/issues/177)) ([b4c4471](https://github.com/chanzuckerberg/single-cell-explorer/commit/b4c44715b7bff6e030c5e8580040794dcf61f09d)) +* e2e base url ([#179](https://github.com/chanzuckerberg/single-cell-explorer/issues/179)) ([3d240c8](https://github.com/chanzuckerberg/single-cell-explorer/commit/3d240c879ffc15e94af196728ffbb609eb7d0f17)) +* eb dir -> ecs dir ([#524](https://github.com/chanzuckerberg/single-cell-explorer/issues/524)) ([847141d](https://github.com/chanzuckerberg/single-cell-explorer/commit/847141d5f72f8a140b3526680e5ad63094251fc2)) +* empty object triggers spatial normalization ([#973](https://github.com/chanzuckerberg/single-cell-explorer/issues/973)) ([b50ccbf](https://github.com/chanzuckerberg/single-cell-explorer/commit/b50ccbfabd1df92e64051be33669fe83e0f77aa1)) +* enable deployment on rdev ([#299](https://github.com/chanzuckerberg/single-cell-explorer/issues/299)) ([10fe915](https://github.com/chanzuckerberg/single-cell-explorer/commit/10fe91592691c30c0e5fc62e3b3a0582a97d39fd)) +* envfile in deploy-happy-stack ([#612](https://github.com/chanzuckerberg/single-cell-explorer/issues/612)) ([1e2e1b2](https://github.com/chanzuckerberg/single-cell-explorer/commit/1e2e1b2612c9f60ef3c778bae288d96ee6eff1a4)) +* exclude specific ontology term id keys ([#953](https://github.com/chanzuckerberg/single-cell-explorer/issues/953)) ([5e9bfec](https://github.com/chanzuckerberg/single-cell-explorer/commit/5e9bfecfb15b779d6f9c8823b886c22eb1dd6e1f)) +* explicitly depend on favicons ([#2143](https://github.com/chanzuckerberg/single-cell-explorer/issues/2143)) ([f36d889](https://github.com/chanzuckerberg/single-cell-explorer/commit/f36d88945542920bbb0ea93312707f0702b9ffe1)) +* **explorer:** bundle images ([#707](https://github.com/chanzuckerberg/single-cell-explorer/issues/707)) ([2c60abf](https://github.com/chanzuckerberg/single-cell-explorer/commit/2c60abf9dbd42da1687f7305f09895ba5a75b2ec)) +* **explorer:** enable Safari and fix bundled image path ([#708](https://github.com/chanzuckerberg/single-cell-explorer/issues/708)) ([80fc7c6](https://github.com/chanzuckerberg/single-cell-explorer/commit/80fc7c63ca4c5b87b34f0a9eb6814456ebe5d6e3)) +* **explorer:** filter out where feature_is_filtered is true ([#684](https://github.com/chanzuckerberg/single-cell-explorer/issues/684)) ([cd045db](https://github.com/chanzuckerberg/single-cell-explorer/commit/cd045db66f6207eedf408e86ed3a888240977de2)) +* fail happy deploy if service does not start successfully ([#663](https://github.com/chanzuckerberg/single-cell-explorer/issues/663)) ([7796ef7](https://github.com/chanzuckerberg/single-cell-explorer/commit/7796ef7c9a2492db04e17d6b7a14968f800f51e5)) +* fix lasso canceling by removing definition checking ([#848](https://github.com/chanzuckerberg/single-cell-explorer/issues/848)) ([188c4de](https://github.com/chanzuckerberg/single-cell-explorer/commit/188c4de8d00b5aabc423cd597d9c92993638f6d9)) +* Fix menubar overflow by removing undo redo, some letters, and umap icon ([#466](https://github.com/chanzuckerberg/single-cell-explorer/issues/466)) ([20251bb](https://github.com/chanzuckerberg/single-cell-explorer/commit/20251bba4708b7a5ee9ddf500db423263d480f0c)) +* fix regex API prefix substitution for dataset selection ([#807](https://github.com/chanzuckerberg/single-cell-explorer/issues/807)) ([bd4f07a](https://github.com/chanzuckerberg/single-cell-explorer/commit/bd4f07a98045ed9317c62dba4078ba5b603c40e5)) +* Fix squished side panel after download ([#1006](https://github.com/chanzuckerberg/single-cell-explorer/issues/1006)) ([ead9c8a](https://github.com/chanzuckerberg/single-cell-explorer/commit/ead9c8ae61b91a8d48e7600158ff3badae09b5db)) +* Fixed bug where continuous legend is appearing for categorical color-bys ([#440](https://github.com/chanzuckerberg/single-cell-explorer/issues/440)) ([fc35d0c](https://github.com/chanzuckerberg/single-cell-explorer/commit/fc35d0c1d68b20af9020440508bbfb684b28edf4)) +* Fixed issue where config was not generating properly due to CXG version upgrade ([#492](https://github.com/chanzuckerberg/single-cell-explorer/issues/492)) ([e0500d7](https://github.com/chanzuckerberg/single-cell-explorer/commit/e0500d7cfdc5aedf220793178ee63fa3138e1f52)) +* Fixes missing breadcrumbs introduced in unified navbar update. ([#465](https://github.com/chanzuckerberg/single-cell-explorer/issues/465)) ([20227b1](https://github.com/chanzuckerberg/single-cell-explorer/commit/20227b1379d599b9dae60aa55f6b43793a1e867f)) +* fixing a bug that occurs when there are more than 1000 categories ([#462](https://github.com/chanzuckerberg/single-cell-explorer/issues/462)) ([f35d88b](https://github.com/chanzuckerberg/single-cell-explorer/commit/f35d88bb7438c18cffd68cc93506a7f9b55cb714)) +* Full fix QuickGene ([#151](https://github.com/chanzuckerberg/single-cell-explorer/issues/151)) ([7eb97f7](https://github.com/chanzuckerberg/single-cell-explorer/commit/7eb97f710663105055d5ddd3af846223084bbf1d)) +* gene info QA changes ([#351](https://github.com/chanzuckerberg/single-cell-explorer/issues/351)) ([24009c5](https://github.com/chanzuckerberg/single-cell-explorer/commit/24009c5e5445f680f81fdafeb9cde2dc64b0f152)) +* hide navbar when seamless not enabled ([#482](https://github.com/chanzuckerberg/single-cell-explorer/issues/482)) ([5901e1e](https://github.com/chanzuckerberg/single-cell-explorer/commit/5901e1e57dffe988075a72d332019100eae3264f)) +* implemented temporary workaround suggested by TileDB. ([#2251](https://github.com/chanzuckerberg/single-cell-explorer/issues/2251)) ([#58](https://github.com/chanzuckerberg/single-cell-explorer/issues/58)) ([4d94a26](https://github.com/chanzuckerberg/single-cell-explorer/commit/4d94a26eed2ad48bdba05f902ced2209c936c2c7)) +* invalidate metadata cache when dataset fails to load ([#87](https://github.com/chanzuckerberg/single-cell-explorer/issues/87)) ([db9f875](https://github.com/chanzuckerberg/single-cell-explorer/commit/db9f875f5e11946948ea34972b3269db84e053bf)) +* linting ([#559](https://github.com/chanzuckerberg/single-cell-explorer/issues/559)) ([79b42e0](https://github.com/chanzuckerberg/single-cell-explorer/commit/79b42e0222afb86fc3a69153696f67fc1c52e6d8)) +* make integration secret non-sensitive ([ebb7d07](https://github.com/chanzuckerberg/single-cell-explorer/commit/ebb7d07a0b06efed5efb1f0fd439c9f8b44ffa1a)) +* make push rdev use happy go client ([#336](https://github.com/chanzuckerberg/single-cell-explorer/issues/336)) ([1b10f5e](https://github.com/chanzuckerberg/single-cell-explorer/commit/1b10f5ed62715ee3ecce1a352765c3a069f4db5d)) +* missing uns array returns error instead of None ([#832](https://github.com/chanzuckerberg/single-cell-explorer/issues/832)) ([f157e0c](https://github.com/chanzuckerberg/single-cell-explorer/commit/f157e0c05fb8d12150587aa1aa0289a62f912328)) +* missing uns array returns error instead on None ([f0d7c62](https://github.com/chanzuckerberg/single-cell-explorer/commit/f0d7c626739e77abd2de9689ad92c80e4f44b380)) +* Modify CSP to Allow Hubspot ([#634](https://github.com/chanzuckerberg/single-cell-explorer/issues/634)) ([c466aff](https://github.com/chanzuckerberg/single-cell-explorer/commit/c466aff255bd0b7469b6970250241a2a923584ee)) +* **navbar:** WMG link ([#449](https://github.com/chanzuckerberg/single-cell-explorer/issues/449)) ([050e1f3](https://github.com/chanzuckerberg/single-cell-explorer/commit/050e1f3da97fede87b09801ed54b5a8d37cb5499)) +* no floating promises ([#946](https://github.com/chanzuckerberg/single-cell-explorer/issues/946)) ([f3d49fd](https://github.com/chanzuckerberg/single-cell-explorer/commit/f3d49fd250c1d36f27d9e2fa2fc24e2b155bcb73)) +* override default so that issues are not marked as stale ([#650](https://github.com/chanzuckerberg/single-cell-explorer/issues/650)) ([af78145](https://github.com/chanzuckerberg/single-cell-explorer/commit/af78145309dddf42b0affec2d26b26a33b32eec4)) +* pin Wekzeug to 2.2.3 ([#595](https://github.com/chanzuckerberg/single-cell-explorer/issues/595)) ([7a9385d](https://github.com/chanzuckerberg/single-cell-explorer/commit/7a9385db96279442988b97c0b84fcaf39f71fe9d)) +* point to local server ([#2274](https://github.com/chanzuckerberg/single-cell-explorer/issues/2274)) ([873b3a2](https://github.com/chanzuckerberg/single-cell-explorer/commit/873b3a2f1f2f643e3fff04ba095b38afc7c8c3c1)) +* reactivate strict slashes ([#789](https://github.com/chanzuckerberg/single-cell-explorer/issues/789)) ([5027bf2](https://github.com/chanzuckerberg/single-cell-explorer/commit/5027bf2b2ee89fac53f14b8ae3eabf074f85df6b)) +* regen package-lock.json file to solve dependency issue in dev ([#301](https://github.com/chanzuckerberg/single-cell-explorer/issues/301)) ([4d58c23](https://github.com/chanzuckerberg/single-cell-explorer/commit/4d58c23a9ecb27c00fc8d96a1e06e962b18ec980)) +* remove empty attribute from config ([#821](https://github.com/chanzuckerberg/single-cell-explorer/issues/821)) ([9a68bdb](https://github.com/chanzuckerberg/single-cell-explorer/commit/9a68bdbb70201fbf1e43f03e300361ef789fd760)) +* remove implicit state toggling for spatial underlay in favor of explicit state setting ([#876](https://github.com/chanzuckerberg/single-cell-explorer/issues/876)) ([a0a3322](https://github.com/chanzuckerberg/single-cell-explorer/commit/a0a332242ea81778d68bb1a1d54e6dde8f3e98c3)) +* remove spaces in param setup ([#2380](https://github.com/chanzuckerberg/single-cell-explorer/issues/2380)) ([3fdf5ca](https://github.com/chanzuckerberg/single-cell-explorer/commit/3fdf5cac9d0f661642b58f637e3e6ee931ed4f3b)) +* remove trailing slash from s3_uri ([#198](https://github.com/chanzuckerberg/single-cell-explorer/issues/198)) ([fdda2f4](https://github.com/chanzuckerberg/single-cell-explorer/commit/fdda2f4ccbd11adfc7af89044eee5ab6712d0d1e)) +* reset gene set colorScale on gene set deletion ([#2264](https://github.com/chanzuckerberg/single-cell-explorer/issues/2264)) ([b8b1d0d](https://github.com/chanzuckerberg/single-cell-explorer/commit/b8b1d0dd9eb6510711f45ff5fd82471e5f71815a)) +* return response caching ([#199](https://github.com/chanzuckerberg/single-cell-explorer/issues/199)) ([844c61f](https://github.com/chanzuckerberg/single-cell-explorer/commit/844c61f5bd701fa0540e67e2e509a722e2fe708d)) +* Revert quickGene partially ([#149](https://github.com/chanzuckerberg/single-cell-explorer/issues/149)) ([2414fd0](https://github.com/chanzuckerberg/single-cell-explorer/commit/2414fd05fd240db54831c08f3f4c38a2f6ada0e9)) +* same category and gene name coloring issues ([#276](https://github.com/chanzuckerberg/single-cell-explorer/issues/276)) ([e96a705](https://github.com/chanzuckerberg/single-cell-explorer/commit/e96a7057575309290a6e07930e25315044bb0074)) +* server/requirements-dev.txt to reduce vulnerabilities ([#2055](https://github.com/chanzuckerberg/single-cell-explorer/issues/2055)) ([09466a5](https://github.com/chanzuckerberg/single-cell-explorer/commit/09466a5c329e41462f35604fed8dabebe59bf6bb)) +* set count to 15 for testing ([#2324](https://github.com/chanzuckerberg/single-cell-explorer/issues/2324)) ([1ebde22](https://github.com/chanzuckerberg/single-cell-explorer/commit/1ebde2213d6dec6f4420715244336d90a468735b)) +* spatial test and dataset ([#881](https://github.com/chanzuckerberg/single-cell-explorer/issues/881)) ([e1ef4a5](https://github.com/chanzuckerberg/single-cell-explorer/commit/e1ef4a5b52fc8da69d1df8b47518a7a1af40cc56)) +* **spatial:** use global api prefix for /spatial/meta calls ([#822](https://github.com/chanzuckerberg/single-cell-explorer/issues/822)) ([2e286ba](https://github.com/chanzuckerberg/single-cell-explorer/commit/2e286ba19c32e0822c56e7c6aebbd4913944a61f)) +* thuang-fix-tsconfig-path ([#2372](https://github.com/chanzuckerberg/single-cell-explorer/issues/2372)) ([fc60b2a](https://github.com/chanzuckerberg/single-cell-explorer/commit/fc60b2acef18bb685b84809c8b3bd351b924c0a7)) +* treat boolean types as categoricals ([#656](https://github.com/chanzuckerberg/single-cell-explorer/issues/656)) ([4b43040](https://github.com/chanzuckerberg/single-cell-explorer/commit/4b4304096c0c3c536225c033f5e3405078b8d318)) +* unit tests and slight refactor ([#877](https://github.com/chanzuckerberg/single-cell-explorer/issues/877)) ([2a3b298](https://github.com/chanzuckerberg/single-cell-explorer/commit/2a3b298b2a0feaf416d30d9677f51ccff05da1b8)) +* update colorTable code so linear scan only happens once ([#328](https://github.com/chanzuckerberg/single-cell-explorer/issues/328)) ([c238e99](https://github.com/chanzuckerberg/single-cell-explorer/commit/c238e99a9a07004b1e0349dd7f71d9b6572d5682)) +* update CSP to allow for image fetching from backend ([#819](https://github.com/chanzuckerberg/single-cell-explorer/issues/819)) ([d3ddc40](https://github.com/chanzuckerberg/single-cell-explorer/commit/d3ddc405cbdb1216de5be97e72cfc9307906562c)) +* update server version to 0.16.7 ([#2276](https://github.com/chanzuckerberg/single-cell-explorer/issues/2276)) ([90da04b](https://github.com/chanzuckerberg/single-cell-explorer/commit/90da04b6c7bffbfe7d155b1edfc5bc90abe4efcc)) +* update spatial url condition ([#967](https://github.com/chanzuckerberg/single-cell-explorer/issues/967)) ([02db419](https://github.com/chanzuckerberg/single-cell-explorer/commit/02db419911df5671dddf5a7ed25c0b7958733a57)) +* upgrade github actions ([#598](https://github.com/chanzuckerberg/single-cell-explorer/issues/598)) ([4e30db8](https://github.com/chanzuckerberg/single-cell-explorer/commit/4e30db883b4addaf95979908c72711ec7e4efccc)) +* upgraded tiledb ([#2251](https://github.com/chanzuckerberg/single-cell-explorer/issues/2251)) ([#44](https://github.com/chanzuckerberg/single-cell-explorer/issues/44)) ([8d21a55](https://github.com/chanzuckerberg/single-cell-explorer/commit/8d21a5553ef33f37224b256fcf3f094efac8d8d7)) +* upgraded tiledb and reverted workaround ([#61](https://github.com/chanzuckerberg/single-cell-explorer/issues/61)) ([#66](https://github.com/chanzuckerberg/single-cell-explorer/issues/66)) ([6841c72](https://github.com/chanzuckerberg/single-cell-explorer/commit/6841c72e15c0039fe430174447e58af3b17577a9)) +* use AppConfig to configure logging for server ([#720](https://github.com/chanzuckerberg/single-cell-explorer/issues/720)) ([1104f80](https://github.com/chanzuckerberg/single-cell-explorer/commit/1104f80f8411399cd4a2417007af16250e9ae9e3)) +* use env specific secret ([#2204](https://github.com/chanzuckerberg/single-cell-explorer/issues/2204)) ([265ccf3](https://github.com/chanzuckerberg/single-cell-explorer/commit/265ccf3682de2bb6bbe6f401f963dddced61d0a7)) +* verify caching headers for dataset-metadata ([#204](https://github.com/chanzuckerberg/single-cell-explorer/issues/204)) ([a188c9e](https://github.com/chanzuckerberg/single-cell-explorer/commit/a188c9e909c31e6b65a16089867a6548624d31e6)) +* wrong integration secret in the rdev environment ([#655](https://github.com/chanzuckerberg/single-cell-explorer/issues/655)) ([89e0acb](https://github.com/chanzuckerberg/single-cell-explorer/commit/89e0acb7669181c5578620276d0321d495552b0f)) +* wrong path in start.sh ([#522](https://github.com/chanzuckerberg/single-cell-explorer/issues/522)) ([ea9f3e4](https://github.com/chanzuckerberg/single-cell-explorer/commit/ea9f3e4299a03c87a3d8cec085a19f1131c5f65e)) + + +### Misc + +* 1210 Add Plausible ([#91](https://github.com/chanzuckerberg/single-cell-explorer/issues/91)) ([70b0439](https://github.com/chanzuckerberg/single-cell-explorer/commit/70b0439474be906ac1b4f6415d771910873a51d5)) +* 717 Add Chromatic and Storybook ([#723](https://github.com/chanzuckerberg/single-cell-explorer/issues/723)) ([3977efd](https://github.com/chanzuckerberg/single-cell-explorer/commit/3977efd8817906c6567fe5cc94aa749aaf65ec1f)) +* 991 Add pan and zoom analytics events ([#992](https://github.com/chanzuckerberg/single-cell-explorer/issues/992)) ([34824b9](https://github.com/chanzuckerberg/single-cell-explorer/commit/34824b9f8b150f4135640fb0965b3def2baba682)) +* add analytics to cg marker gene sets ([#814](https://github.com/chanzuckerberg/single-cell-explorer/issues/814)) ([49f8bc9](https://github.com/chanzuckerberg/single-cell-explorer/commit/49f8bc94fc276614599c23ed06894c2608021d2b)) +* add cellguide to navbar in explorer ([#645](https://github.com/chanzuckerberg/single-cell-explorer/issues/645)) ([2a8496f](https://github.com/chanzuckerberg/single-cell-explorer/commit/2a8496faf3d2ced54c1b87dac43cd1912d88588d)) +* add e2e tests for cellguide cxgs and related features ([#902](https://github.com/chanzuckerberg/single-cell-explorer/issues/902)) ([be168f7](https://github.com/chanzuckerberg/single-cell-explorer/commit/be168f79ac4f3d9aebefbc3f95b1ff6417268b36)) +* Add global type file ([#2363](https://github.com/chanzuckerberg/single-cell-explorer/issues/2363)) ([95ce39f](https://github.com/chanzuckerberg/single-cell-explorer/commit/95ce39f2e9affa3b37bf34d17acc1cf2367bbefe)) +* add happy locking ([#318](https://github.com/chanzuckerberg/single-cell-explorer/issues/318)) ([9d73ec7](https://github.com/chanzuckerberg/single-cell-explorer/commit/9d73ec764a53d7b63cbd55c0e24fd69cb22dced5)) +* add missing config.yaml file ([#312](https://github.com/chanzuckerberg/single-cell-explorer/issues/312)) ([b94d32b](https://github.com/chanzuckerberg/single-cell-explorer/commit/b94d32bd832c4ff24f42d0fc053d20e9cf7efdd7)) +* add schema types ([#2369](https://github.com/chanzuckerberg/single-cell-explorer/issues/2369)) ([26de334](https://github.com/chanzuckerberg/single-cell-explorer/commit/26de334274dad9fdf5d162bdff810055cf176633)) +* add script to patch explorer to find portal rdev stack ([#671](https://github.com/chanzuckerberg/single-cell-explorer/issues/671)) ([1766d30](https://github.com/chanzuckerberg/single-cell-explorer/commit/1766d30a98af05e8c5bb58f879d9a3ed43223ea5)) +* add SECURITY.md file at top level ([#531](https://github.com/chanzuckerberg/single-cell-explorer/issues/531)) ([0b11f8e](https://github.com/chanzuckerberg/single-cell-explorer/commit/0b11f8e23107780130ac441e3fdac3fb3d00167c)) +* Add server timings to gene expression API routes ([#451](https://github.com/chanzuckerberg/single-cell-explorer/issues/451)) ([ded3e0f](https://github.com/chanzuckerberg/single-cell-explorer/commit/ded3e0f78b91f80d12d43dc74767ece57a8b1534)) +* Add timeout to unit test ([#908](https://github.com/chanzuckerberg/single-cell-explorer/issues/908)) ([427c695](https://github.com/chanzuckerberg/single-cell-explorer/commit/427c695d3640cf548dec90f333a41966c92f40c2)) +* add to software catalog ([#649](https://github.com/chanzuckerberg/single-cell-explorer/issues/649)) ([93101f4](https://github.com/chanzuckerberg/single-cell-explorer/commit/93101f4c050e53dba3076d2422b788b24272f69b)) +* Add types for rrecognized version commit ([#81](https://github.com/chanzuckerberg/single-cell-explorer/issues/81)) ([e807dca](https://github.com/chanzuckerberg/single-cell-explorer/commit/e807dcade22db6699a11e6d6d054bedb78822d63)) +* Added tech issue template ([#560](https://github.com/chanzuckerberg/single-cell-explorer/issues/560)) ([65b3890](https://github.com/chanzuckerberg/single-cell-explorer/commit/65b38904383da2c56140f34a0d68490950db18da)) +* Analytics - embedding mode selection event only tracks open event ([#1000](https://github.com/chanzuckerberg/single-cell-explorer/issues/1000)) ([7dcee26](https://github.com/chanzuckerberg/single-cell-explorer/commit/7dcee2662fdf5bbd5f26d58f5bf92ecd054d9063)) +* back merge hotfix ([#157](https://github.com/chanzuckerberg/single-cell-explorer/issues/157)) ([2922f4a](https://github.com/chanzuckerberg/single-cell-explorer/commit/2922f4a78a5cee81576187f6b829c21a55dd9d20)) +* beanstalk cleanup ([#268](https://github.com/chanzuckerberg/single-cell-explorer/issues/268)) ([dbbbb5e](https://github.com/chanzuckerberg/single-cell-explorer/commit/dbbbb5e6af870bad1c4e7485a0c73a5701738937)) +* bump chart to 1.3.0 ([#1009](https://github.com/chanzuckerberg/single-cell-explorer/issues/1009)) ([e0407fe](https://github.com/chanzuckerberg/single-cell-explorer/commit/e0407fe7fa598398ea238edb34280c31d1bcf325)) +* Clean up development guidelines. ([#253](https://github.com/chanzuckerberg/single-cell-explorer/issues/253)) ([baeb431](https://github.com/chanzuckerberg/single-cell-explorer/commit/baeb431a02a10fa2a566e9933cc604ba7c99f99a)) +* clean up documentation and fix broken links. ([#252](https://github.com/chanzuckerberg/single-cell-explorer/issues/252)) ([f6c32b4](https://github.com/chanzuckerberg/single-cell-explorer/commit/f6c32b4a0ad36cf95c808660883b81f771ac1e09)) +* clean up e2eAnnotations.test.ts [#213](https://github.com/chanzuckerberg/single-cell-explorer/issues/213) ([#281](https://github.com/chanzuckerberg/single-cell-explorer/issues/281)) ([85b215b](https://github.com/chanzuckerberg/single-cell-explorer/commit/85b215be66f7e08ba6934ac23ec9bef3a3dfa555)) +* decrease memory usage in staging explorer ([#661](https://github.com/chanzuckerberg/single-cell-explorer/issues/661)) ([7157144](https://github.com/chanzuckerberg/single-cell-explorer/commit/7157144b4601be11580679a4b13e1db78cd4ea72)) +* **deps-dev:** bump express from 4.18.1 to 4.19.2 in /client ([#857](https://github.com/chanzuckerberg/single-cell-explorer/issues/857)) ([8507436](https://github.com/chanzuckerberg/single-cell-explorer/commit/8507436c41a7e5589ba9b7dedbce9ffba61aef73)) +* **deps-dev:** bump follow-redirects from 1.15.2 to 1.15.4 in /client ([#702](https://github.com/chanzuckerberg/single-cell-explorer/issues/702)) ([c6aa2a7](https://github.com/chanzuckerberg/single-cell-explorer/commit/c6aa2a7c53762a7108f71c0315a0506f201d2295)) +* **deps-dev:** bump ip from 2.0.0 to 2.0.1 in /client ([#771](https://github.com/chanzuckerberg/single-cell-explorer/issues/771)) ([b7d377b](https://github.com/chanzuckerberg/single-cell-explorer/commit/b7d377bcdb7e9d453cc9b05c0c59b84642da0b88)) +* **deps:** bump axios from 0.21.1 to 0.21.4 in /client ([#239](https://github.com/chanzuckerberg/single-cell-explorer/issues/239)) ([981cb3e](https://github.com/chanzuckerberg/single-cell-explorer/commit/981cb3e0c59dbe0d2d9fa026a5f4b12612e8cc14)) +* **deps:** bump cross-fetch from 3.1.4 to 3.1.5 in /client ([#248](https://github.com/chanzuckerberg/single-cell-explorer/issues/248)) ([65a525d](https://github.com/chanzuckerberg/single-cell-explorer/commit/65a525d7a1e0969c8e17f7f544c2251d2eba3aa9)) +* **deps:** bump decode-uri-component from 0.2.0 to 0.2.2 in /client ([#543](https://github.com/chanzuckerberg/single-cell-explorer/issues/543)) ([bbf51b0](https://github.com/chanzuckerberg/single-cell-explorer/commit/bbf51b0c05fd6ec82edb15685b23678896c87b17)) +* **deps:** bump follow-redirects from 1.14.1 to 1.14.8 in /client ([#225](https://github.com/chanzuckerberg/single-cell-explorer/issues/225)) ([0961cc9](https://github.com/chanzuckerberg/single-cell-explorer/commit/0961cc9f9e05248c371fde366b24a0e7a5894ef3)) +* **deps:** bump jinja2 from 2.11.2 to 2.11.3 in /hosted ([#185](https://github.com/chanzuckerberg/single-cell-explorer/issues/185)) ([4e2472c](https://github.com/chanzuckerberg/single-cell-explorer/commit/4e2472c8decb7a0d42682096aedf1376a3e829af)) +* **deps:** bump json5 from 2.2.1 to 2.2.3 in /client ([#552](https://github.com/chanzuckerberg/single-cell-explorer/issues/552)) ([19870eb](https://github.com/chanzuckerberg/single-cell-explorer/commit/19870eb729471a9dae73fc22975ab45dff939048)) +* **deps:** bump loader-utils from 2.0.2 to 2.0.4 in /client ([#536](https://github.com/chanzuckerberg/single-cell-explorer/issues/536)) ([23477dd](https://github.com/chanzuckerberg/single-cell-explorer/commit/23477dda09bdb2d0426997f0e586ee4ad93b20c8)) +* **deps:** bump minimist and jimp in /client ([#468](https://github.com/chanzuckerberg/single-cell-explorer/issues/468)) ([901aaa6](https://github.com/chanzuckerberg/single-cell-explorer/commit/901aaa69b852c6473ab2d2444f8bb0a17ac6ba28)) +* **deps:** bump nanoid from 3.1.23 to 3.3.1 in /client ([#238](https://github.com/chanzuckerberg/single-cell-explorer/issues/238)) ([561ba71](https://github.com/chanzuckerberg/single-cell-explorer/commit/561ba7123794406f02519d18ba1da4df3cedca47)) +* **deps:** bump semver-regex from 3.1.2 to 3.1.3 in /client ([#254](https://github.com/chanzuckerberg/single-cell-explorer/issues/254)) ([615ce76](https://github.com/chanzuckerberg/single-cell-explorer/commit/615ce76b7fbbbc599c5bb16ba5c5823377681409)) +* **deps:** bump simple-get from 3.1.0 to 3.1.1 in /client ([#221](https://github.com/chanzuckerberg/single-cell-explorer/issues/221)) ([1838c68](https://github.com/chanzuckerberg/single-cell-explorer/commit/1838c68a5daaae6b40ee396327fb8dc7dcd86b15)) +* **deps:** bump terser from 5.14.1 to 5.14.2 in /client ([#329](https://github.com/chanzuckerberg/single-cell-explorer/issues/329)) ([da05256](https://github.com/chanzuckerberg/single-cell-explorer/commit/da052564549e6e1ac440112e0522db8c18269dbd)) +* **deps:** bump urllib3 from 1.25.9 to 1.26.5 in /hosted ([#186](https://github.com/chanzuckerberg/single-cell-explorer/issues/186)) ([ad883ca](https://github.com/chanzuckerberg/single-cell-explorer/commit/ad883ca0475fa3314bde10c2ae1f8f308907717d)) +* disable e2e debugging code ([#77](https://github.com/chanzuckerberg/single-cell-explorer/issues/77)) ([0624e07](https://github.com/chanzuckerberg/single-cell-explorer/commit/0624e07128cdbb395558a1f05d96c923f2ea1028)) +* downsize dev explorer to 14G ([#620](https://github.com/chanzuckerberg/single-cell-explorer/issues/620)) ([90e6673](https://github.com/chanzuckerberg/single-cell-explorer/commit/90e6673f601168e1afcda65da31c65f16a2656ed)) +* ECS ci/cd ([#251](https://github.com/chanzuckerberg/single-cell-explorer/issues/251)) ([25070e1](https://github.com/chanzuckerberg/single-cell-explorer/commit/25070e187b10fdc9a5b22c3efa7cbcd2a991e6b7)) +* enforce conventional commits ([#996](https://github.com/chanzuckerberg/single-cell-explorer/issues/996)) ([d0d9643](https://github.com/chanzuckerberg/single-cell-explorer/commit/d0d9643600922ba56f59a61bbd77a4131e38436e)) +* **explorer:** enable safari fix browser page ([#704](https://github.com/chanzuckerberg/single-cell-explorer/issues/704)) ([8ebd1a1](https://github.com/chanzuckerberg/single-cell-explorer/commit/8ebd1a1ea4b84321270396db35792df4f1b04994)) +* extract schema types ([#2375](https://github.com/chanzuckerberg/single-cell-explorer/issues/2375)) ([59c475b](https://github.com/chanzuckerberg/single-cell-explorer/commit/59c475b82117e5fbf5d1882ba44a6ab550ece299)) +* Fix double image download analytics event ([#999](https://github.com/chanzuckerberg/single-cell-explorer/issues/999)) ([dc7be25](https://github.com/chanzuckerberg/single-cell-explorer/commit/dc7be25f2472f0605e8bc8c462df3ad6d9605e9e)) +* fix GHA upload syntax ([#767](https://github.com/chanzuckerberg/single-cell-explorer/issues/767)) ([fb15cf0](https://github.com/chanzuckerberg/single-cell-explorer/commit/fb15cf0cb97b636a73dab99256e79a13235f32ef)) +* fix latent lint errors ([#851](https://github.com/chanzuckerberg/single-cell-explorer/issues/851)) ([fe6683e](https://github.com/chanzuckerberg/single-cell-explorer/commit/fe6683e5e16f23735b09e8c7c91ddb309b36d491)) +* fix local development ([#584](https://github.com/chanzuckerberg/single-cell-explorer/issues/584)) ([f52be5a](https://github.com/chanzuckerberg/single-cell-explorer/commit/f52be5a7b4bcdb96831bd59bfa78301167dc0586)) +* gene info e2e testing ([#365](https://github.com/chanzuckerberg/single-cell-explorer/issues/365)) ([5d73e6f](https://github.com/chanzuckerberg/single-cell-explorer/commit/5d73e6f607dd347b29f669774f7734f2f2d53017)) +* happy terraform staging ([#256](https://github.com/chanzuckerberg/single-cell-explorer/issues/256)) ([f5993b9](https://github.com/chanzuckerberg/single-cell-explorer/commit/f5993b9272985275a096ebe8bf810c0b02ee2bd6)) +* increase rdev memory ([#372](https://github.com/chanzuckerberg/single-cell-explorer/issues/372)) ([18f364e](https://github.com/chanzuckerberg/single-cell-explorer/commit/18f364ec90690e13b1942337c586b6337036da3a)) +* increase staging container count to 2 ([#313](https://github.com/chanzuckerberg/single-cell-explorer/issues/313)) ([aa4beab](https://github.com/chanzuckerberg/single-cell-explorer/commit/aa4beab8c92440957a23d32c0f5c0199f60a9142)) +* migrate sds theme to explorer ([#305](https://github.com/chanzuckerberg/single-cell-explorer/issues/305)) ([d247926](https://github.com/chanzuckerberg/single-cell-explorer/commit/d247926904906fe1128b05636abd7c7d22a5b96f)) +* migrate sds to explorer ([#300](https://github.com/chanzuckerberg/single-cell-explorer/issues/300)) ([8720b99](https://github.com/chanzuckerberg/single-cell-explorer/commit/8720b999d946363662ff8dace87bd1a411fc59a8)) +* misc typing ([#849](https://github.com/chanzuckerberg/single-cell-explorer/issues/849)) ([92e478f](https://github.com/chanzuckerberg/single-cell-explorer/commit/92e478f9a9dcb38bf133028e3ffa1989ad46e253)) +* nest common yaml values ([#1008](https://github.com/chanzuckerberg/single-cell-explorer/issues/1008)) ([ddaa9bb](https://github.com/chanzuckerberg/single-cell-explorer/commit/ddaa9bb598dff51169de22d45b2d9696dfdbc80f)) +* **node:** Upgrade to 16 in Dockerfile ([#448](https://github.com/chanzuckerberg/single-cell-explorer/issues/448)) ([208ddb7](https://github.com/chanzuckerberg/single-cell-explorer/commit/208ddb717880985ad9875b0288372f3983d951cc)) +* pin black version to avoid breaking compatibility with click 8 ([#220](https://github.com/chanzuckerberg/single-cell-explorer/issues/220)) ([00a6934](https://github.com/chanzuckerberg/single-cell-explorer/commit/00a6934c51882663ade074d685e20c5620322e7f)) +* PR runs npm run lint ([14d4035](https://github.com/chanzuckerberg/single-cell-explorer/commit/14d40350c0f5d2bb1adeba10e3694c26eecf0f18)) +* prevent subset when 0 cells are selected ([#921](https://github.com/chanzuckerberg/single-cell-explorer/issues/921)) ([1de020b](https://github.com/chanzuckerberg/single-cell-explorer/commit/1de020b759e8b0fabcd8e43fad500f26d6fe7e82)) +* purge autosave from codebase ([#425](https://github.com/chanzuckerberg/single-cell-explorer/issues/425)) ([3a3feba](https://github.com/chanzuckerberg/single-cell-explorer/commit/3a3febaa83f42880fd9e92e2853bdc2bc77582dd)) +* remove debug code ([#768](https://github.com/chanzuckerberg/single-cell-explorer/issues/768)) ([dc02367](https://github.com/chanzuckerberg/single-cell-explorer/commit/dc02367d0159f30a63fd816013e38efe8ee9f911)) +* Remove python happy and references to it ([#315](https://github.com/chanzuckerberg/single-cell-explorer/issues/315)) ([7d60bd0](https://github.com/chanzuckerberg/single-cell-explorer/commit/7d60bd0648aa5c18b7d098b6a44c4c152e7c70ec)) +* remove terms deprecated in schema 3.0.0 from standard categories ([#533](https://github.com/chanzuckerberg/single-cell-explorer/issues/533)) ([fe66b71](https://github.com/chanzuckerberg/single-cell-explorer/commit/fe66b71dccd45322b02ebdbd23151f3a523d3d61)) +* rename codecov to coverage ([#589](https://github.com/chanzuckerberg/single-cell-explorer/issues/589)) ([fd966b9](https://github.com/chanzuckerberg/single-cell-explorer/commit/fd966b9d123ef5008c1ff046cc97a5000990cfd2)) +* replaced deprecated method to open TileDB array ([#56](https://github.com/chanzuckerberg/single-cell-explorer/issues/56)) ([#236](https://github.com/chanzuckerberg/single-cell-explorer/issues/236)) ([4e7bf79](https://github.com/chanzuckerberg/single-cell-explorer/commit/4e7bf790b4dcbb7bf833c1a6671e900703a9ff41)) +* restore logs ([#359](https://github.com/chanzuckerberg/single-cell-explorer/issues/359)) ([3146f19](https://github.com/chanzuckerberg/single-cell-explorer/commit/3146f19aa7d42212ecd3948bc2b27ab52b4d923b)) +* restore path ([#781](https://github.com/chanzuckerberg/single-cell-explorer/issues/781)) ([782d4d1](https://github.com/chanzuckerberg/single-cell-explorer/commit/782d4d100e608a40020351ad63895163512245dd)) +* revert font to roboto condensed ([#394](https://github.com/chanzuckerberg/single-cell-explorer/issues/394)) ([025beb1](https://github.com/chanzuckerberg/single-cell-explorer/commit/025beb186f5d2f718ec6cf7446032e3b59d6aa1c)) +* runtime config ([#310](https://github.com/chanzuckerberg/single-cell-explorer/issues/310)) ([5311344](https://github.com/chanzuckerberg/single-cell-explorer/commit/53113444932c734538bd3be22accdfc7e8a25ac5)) +* set DEPLOYMENT_STAGE in Dockerfile ([#260](https://github.com/chanzuckerberg/single-cell-explorer/issues/260)) ([78f36b5](https://github.com/chanzuckerberg/single-cell-explorer/commit/78f36b53bab4f1be7b85a04ffb2368adf8f1e1d3)) +* set explorer instance count to 3 ([#259](https://github.com/chanzuckerberg/single-cell-explorer/issues/259)) ([eec0310](https://github.com/chanzuckerberg/single-cell-explorer/commit/eec0310708dfbdc99bbd1d9cddb080be8d4dd004)) +* side by side analytics ([#998](https://github.com/chanzuckerberg/single-cell-explorer/issues/998)) ([565e9db](https://github.com/chanzuckerberg/single-cell-explorer/commit/565e9db5ca2bc8c72b3f1ef3e9e390feebd7349b)) +* stage -> staging in the config generation file ([#266](https://github.com/chanzuckerberg/single-cell-explorer/issues/266)) ([b7d16b8](https://github.com/chanzuckerberg/single-cell-explorer/commit/b7d16b8d7681846aca994cff35f0faf138ef6709)) +* staging->prod ([#722](https://github.com/chanzuckerberg/single-cell-explorer/issues/722)) ([9b4210f](https://github.com/chanzuckerberg/single-cell-explorer/commit/9b4210faa378f1184ec3d863d6e0d1fc506cb146)) +* test artifact upload again ([#766](https://github.com/chanzuckerberg/single-cell-explorer/issues/766)) ([49f89f0](https://github.com/chanzuckerberg/single-cell-explorer/commit/49f89f052ae5346777b6e35a7c4f5ff55a119fe1)) +* **ts:** Type the graph, lasso, and some rendering code ([#788](https://github.com/chanzuckerberg/single-cell-explorer/issues/788)) ([91ef413](https://github.com/chanzuckerberg/single-cell-explorer/commit/91ef4138cd83f1dde9691d7ba2ff83e435c79cda)) +* tune Argus configuration ([#1003](https://github.com/chanzuckerberg/single-cell-explorer/issues/1003)) ([a5f014f](https://github.com/chanzuckerberg/single-cell-explorer/commit/a5f014f636d85621ed21be88993fd850e729a607)) +* type centroid util ([#36](https://github.com/chanzuckerberg/single-cell-explorer/issues/36)) ([0721964](https://github.com/chanzuckerberg/single-cell-explorer/commit/07219641465a62b0b329ae86e189886b2cec153b)) +* type general utils ([#2381](https://github.com/chanzuckerberg/single-cell-explorer/issues/2381)) ([08b03ac](https://github.com/chanzuckerberg/single-cell-explorer/commit/08b03ace60f1ea411f98b82622dbf67b23a1cee3)) +* typed cascade reducer ([#426](https://github.com/chanzuckerberg/single-cell-explorer/issues/426)) ([e6967da](https://github.com/chanzuckerberg/single-cell-explorer/commit/e6967da19c138ec4da4d942dbb335bb64da5edda)) +* typed config reducer ([#424](https://github.com/chanzuckerberg/single-cell-explorer/issues/424)) ([d11f8c6](https://github.com/chanzuckerberg/single-cell-explorer/commit/d11f8c6e7b161116beab859349f1f9c98b46e8ea)) +* typed controls reducer ([#418](https://github.com/chanzuckerberg/single-cell-explorer/issues/418)) ([2269ec0](https://github.com/chanzuckerberg/single-cell-explorer/commit/2269ec0fe0cbe064f7310bdc9f5d0a178d190c12)) +* typed genesetsUI reducer ([#423](https://github.com/chanzuckerberg/single-cell-explorer/issues/423)) ([51086b4](https://github.com/chanzuckerberg/single-cell-explorer/commit/51086b48ffa5897f55c557b61cd64103a6b2f70e)) +* update Argus values ([#997](https://github.com/chanzuckerberg/single-cell-explorer/issues/997)) ([c53322c](https://github.com/chanzuckerberg/single-cell-explorer/commit/c53322c82e4108f7633553d3612a75d1d0fd21d0)) +* update BE dependencies ([3d07afd](https://github.com/chanzuckerberg/single-cell-explorer/commit/3d07afd692021e8daab9aea919b4b6ebbdb37e39)) +* update BE dependencies ([#571](https://github.com/chanzuckerberg/single-cell-explorer/issues/571)) ([3d07afd](https://github.com/chanzuckerberg/single-cell-explorer/commit/3d07afd692021e8daab9aea919b4b6ebbdb37e39)) +* update chromatic project dir ([#782](https://github.com/chanzuckerberg/single-cell-explorer/issues/782)) ([49fb0df](https://github.com/chanzuckerberg/single-cell-explorer/commit/49fb0df09b6d732456aa9684e19b1385dcfa6d5f)) +* Update clipping smoke test to ensure categorical data appears properly when clipping ([#456](https://github.com/chanzuckerberg/single-cell-explorer/issues/456)) ([77cf3d8](https://github.com/chanzuckerberg/single-cell-explorer/commit/77cf3d8363f0c35f7fa4c8776eb307a7856f863d)) +* update CXG docs ([#882](https://github.com/chanzuckerberg/single-cell-explorer/issues/882)) ([c5f2ccf](https://github.com/chanzuckerberg/single-cell-explorer/commit/c5f2ccfa42a3ca74bbbf714bb6b71089066cda21)) +* Update deploy GHA artifact upload paths ([#765](https://github.com/chanzuckerberg/single-cell-explorer/issues/765)) ([c24c451](https://github.com/chanzuckerberg/single-cell-explorer/commit/c24c451426ca77fb2f940e740894eab2a10e45f3)) +* update Docker base image to ubuntu 22 ([#586](https://github.com/chanzuckerberg/single-cell-explorer/issues/586)) ([260354e](https://github.com/chanzuckerberg/single-cell-explorer/commit/260354eeb1959d261fd8b30804f4c48ee074eb18)) +* update documentation links ([#353](https://github.com/chanzuckerberg/single-cell-explorer/issues/353)) ([799f002](https://github.com/chanzuckerberg/single-cell-explorer/commit/799f002f06c76de313adc6401689dd42ff2454af)) +* Update e2e test timeout to prevent flaky tests ([#770](https://github.com/chanzuckerberg/single-cell-explorer/issues/770)) ([441cd4c](https://github.com/chanzuckerberg/single-cell-explorer/commit/441cd4c6d09b7422ecea22100e43ee726517362b)) +* update env vars and set up additional ingress rules ([#1007](https://github.com/chanzuckerberg/single-cell-explorer/issues/1007)) ([7e31718](https://github.com/chanzuckerberg/single-cell-explorer/commit/7e317187f749b1e7427a7c25826b908da7665f3d)) +* update env vars to use cloudfront domains ([#1005](https://github.com/chanzuckerberg/single-cell-explorer/issues/1005)) ([10d1638](https://github.com/chanzuckerberg/single-cell-explorer/commit/10d163857bc01311cbcbaa6dbbbee41bbc673402)) +* update happy actions to latest ([#573](https://github.com/chanzuckerberg/single-cell-explorer/issues/573)) ([072ec6b](https://github.com/chanzuckerberg/single-cell-explorer/commit/072ec6b2c904d329de6bb5bb4284e4ae7383b80f)) +* update happy config task launch type ([#651](https://github.com/chanzuckerberg/single-cell-explorer/issues/651)) ([65e5da0](https://github.com/chanzuckerberg/single-cell-explorer/commit/65e5da036d6c65b2bb89f20e9d1d4886a9822166)) +* Update license copyright year ([#557](https://github.com/chanzuckerberg/single-cell-explorer/issues/557)) ([f904ef6](https://github.com/chanzuckerberg/single-cell-explorer/commit/f904ef6f7f1ed45f442b96bf37d891142317f15d)) +* Update spaital analytics ([#990](https://github.com/chanzuckerberg/single-cell-explorer/issues/990)) ([339f7c9](https://github.com/chanzuckerberg/single-cell-explorer/commit/339f7c93c829c75464d8f8eefd5272812cf9e61f)) +* update spatial test dataset ([#862](https://github.com/chanzuckerberg/single-cell-explorer/issues/862)) ([2d76056](https://github.com/chanzuckerberg/single-cell-explorer/commit/2d7605695d2196f63da40c4dd15bc22a8a5ca737)) +* update super-cool-spatial ([#962](https://github.com/chanzuckerberg/single-cell-explorer/issues/962)) ([ab1f6f7](https://github.com/chanzuckerberg/single-cell-explorer/commit/ab1f6f74f9356294ce5abf427761dc17b79f73e0)) +* updating logo ([#389](https://github.com/chanzuckerberg/single-cell-explorer/issues/389)) ([9670366](https://github.com/chanzuckerberg/single-cell-explorer/commit/9670366fec280fa0d5982dcbe5663a469ba635de)) +* upgrade aws provider ([#364](https://github.com/chanzuckerberg/single-cell-explorer/issues/364)) ([f632e82](https://github.com/chanzuckerberg/single-cell-explorer/commit/f632e82a1f17857bb63caa7811e1ccb0c9d9d981)) +* upgrade tiledb to 0.16.5 ([#404](https://github.com/chanzuckerberg/single-cell-explorer/issues/404)) ([f495d09](https://github.com/chanzuckerberg/single-cell-explorer/commit/f495d09dab93c1800f82a33bf4dbd80eb09fd72b)) +* upgrade tiledb to 0.16.5 part 2 ([eeab220](https://github.com/chanzuckerberg/single-cell-explorer/commit/eeab220fed4edc7e90ba19af61c1f50d5788e725)) +* upgrade tiledb to 0.21.4 ([#617](https://github.com/chanzuckerberg/single-cell-explorer/issues/617)) ([99211b2](https://github.com/chanzuckerberg/single-cell-explorer/commit/99211b23ad18b7be692b1f568a7ba42090e0bcdf)) +* use correct roles for staging & prod ([#1002](https://github.com/chanzuckerberg/single-cell-explorer/issues/1002)) ([2a1219e](https://github.com/chanzuckerberg/single-cell-explorer/commit/2a1219e59c12a77c334f593c88785df839e72697)) +* use gunicorn for ecs ([#250](https://github.com/chanzuckerberg/single-cell-explorer/issues/250)) ([8544eb5](https://github.com/chanzuckerberg/single-cell-explorer/commit/8544eb5086fe32d56749081aca8ee19138f439a1))