Our group works at the interface of computer science, biology, and mathematics by applying computational approaches to the seas of data in biomedical research. One of the main interests of our group is the development of technologies to make large-scale computational approaches accessible and more collaborative to a wider scientific audience. Our recent web-based technology, Cell Collective, enables scientists from across the globe to construct and simulate large-scale computational models of biological systems in a highly collaborative fashion. This software enables biomedical researchers to study the dynamics of biological systems (e.g., cells) under both healthy and diseased conditions. Cell Collective provides a unique environment for real-time, interactive simulations to enable users to analyze and visualize the multitude of effects a disease-related malfunction can have on the rest of the cell. Over the last couple of years, Cell Collective has also made its way into classrooms, where students in life sciences courses can learn about biological processes by building, simulating, breaking, and re-building computational models of these processes. Cell Collective now supports about 2,000 students/year in introductory life sciences courses in 10+ universities.
Other technologies developed by our organization include cost-effective mobile disease monitoring devices, interactive on-line tissue sample analysis, an interactive statistical analysis platform for teaching life sciences students about data analysis, etc.
Our group consists of computer scientists, biochemists, biologists, bioinformaticians, as well as mathematicians, creating an unique environment of diverse skills, integrated by a single interest point.
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We would like to know who you are and how you think. Incorporate the following into your application:
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Your information 1a. Name, email, and website (optional)
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Brief background: education and relevant work experience
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Your programming interests and strengths 3a. What are your languages of choice? 3b. Any prior experience with open source development? 3c. What do you want to learn this summer?
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Your interest and background in biology, bioinformatics, or computational biology. 4a. Any prior exposure to biology or bioinformatics? (Not required but helpful) 4b. Any interest in learning a bit of biology this summer?
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Your ideas for a project (an original idea or one expanded from our Ideas Page) 5a. Provide as much detail as possible 5b. Strong applicants include an implementation plan and timeline (hint!) 5c. Refer to and link to other projects or products that illustrate your ideas 5d. Identify possible hurdles and questions that will require more research/planning
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Your commitment this summer 6a. When do your classes and exams finish? 6b. Do you have any other school-related activities scheduled during the coding period? 6c. Do you have a full- or part-time job or internship this summer? 6d. How many hours per week do have available for GSoC?
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Submit your application through the GSoC Site as explained here: https://google.github.io/gsocguides/student/