DESCRIPTION

Package: scIRcom
Title: A toolkit for single-cell immune receptor profiling
Version: 1.7.0
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "chinure@163.com"))
Description: scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages. It also allows for general analysis of single-cell clonotype information without the use of expression information. The package functions as a wrapper for Startrac and powerTCR R packages.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.1
biocViews: Software, ImmunoOncology, SingleCell, Classification, Annotation, Sequencing
Depends: 
	ggplot2, 
	R (>= 4.0)
Imports: 
	stringdist,
	dplyr,
	reshape2,  
	ggalluvial,
	stringr, 
	vegan, 
	powerTCR, 
	SingleCellExperiment,
	SummarizedExperiment,
	plyr,
	parallel,
	doParallel,
	methods,
	utils, 
	rlang,
	igraph,
	ggraph,
	tidygraph,
	SeuratObject
Suggests: 
	knitr, 
	rmarkdown, 
	BiocStyle,  
	circlize, 
	scales, 
	Seurat,
	scater
VignetteBuilder: knitr