Schema #9

	name: schema-ci

	on:
	push:
	branches:
	- "main"
	paths:
	- "missense_kinase_toolkit/schema/**"
	pull_request:
	branches:
	- "main"
	paths:
	- "missense_kinase_toolkit/schema/**"
	schedule:
	- cron: "0 0 * * 0"

	jobs:
	test:
	name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: [macOS-latest, ubuntu-latest, windows-latest]
	python-version: ["3.10", "3.11"]

	steps:
	- uses: actions/checkout@v3

	- name: Additional info about the build
	shell: bash
	run: \|
	uname -a
	df -h
	ulimit -a

	- uses: mamba-org/setup-micromamba@v1
	with:
	micromamba-version: '1.5.10-0'
	environment-file: devtools/conda-envs/test_env.yaml
	environment-name: schema_test
	create-args: >-
	python=${{ matrix.python-version }}

	- name: Install package
	shell: bash -l {0}
	run: \|
	python -m pip install -e ./missense_kinase_toolkit/schema --no-deps
	micromamba list

	- name: Run tests
	shell: bash -l {0}
	run: \|
	set -e
	pytest \
	-v \
	--cov-report=xml \
	--color=yes \
	--cov=missense_kinase_toolkit/schema \
	missense_kinase_toolkit/schema/mkt/schema/tests/

	- name: Upload coverage reports to Codecov
	uses: codecov/[email protected]
	with:
	fail_ci_if_error: false # optional (default = false)
	file: ./coverage.xml
	flags: schema # optional
	name: codecov-${{ matrix.os }}-py${{ matrix.python-version }}
	token: ${{ secrets.CODECOV_TOKEN }} # required
	verbose: true # optional (default = false)

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