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Lengths.py: SyntaxError: invalid syntax #1

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iwangguoping opened this issue Mar 1, 2022 · 0 comments

iwangguoping commented Mar 1, 2022

It's because the line 19:
print function: missed brackets and should be:
print(record.id + "\t" + repr(len(seq)))

Meanwhile:
line 9 should be at some line

from Bio import SeqIO

from optparse import OptionParser

parser = OptionParser()
parser.add_option("-i", "--inputfile", dest="ifilename",help="fasta file", metavar="FILE")

(options, args) = parser.parse_args()

minqual = 20

handle = open(options.ifilename, "rU")
for record in SeqIO.parse(handle, "fasta"):
	seq = record.seq
	
	print(record.id + "\t" + repr(len(seq)))
handle.close()

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