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Nextflow

Nextflow

Nextflow is a workflow management tool commonly used for biological pipelines.

To see what version of nextflow is available run

$ module avail nextflow

nextflow/23.10.0

To run nextflow load both nextflow and openjdk

$ module load nextflow
$ module load openjdk/17.0.8.1_1

As an example you can run 1_helloworld.nf which prints hello world to the screen.

$ nextflow run 1_helloworld.nf

For a more thorough documentation and explanation of nextflow see our workshop at https://docs.rcd.clemson.edu/training/workshop_catalog/nextflow/online_material_part1/.