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Label classification (Weka)

Labels in label images can be classified according to their shape and size or to intensity measurements derived from a corresponding intensity image.

How to do label classification

Open your data set. Start the CLIJx-Assistant and follow these steps:

  • Your dataset
    • CLIJx-Assistant Starting point
      • Thresholding (e.g. Otsu)
        • Connected Components Labeling
          • Weka Label Classifier

In the dialog of the classifier, make sure to select the right intensity input image.

<iframe src="images/weka_object_classifier.mp4" width="540" height="260"></iframe> [Download video](images/weka_object_classifier.mp4)

Furthermore, choose the right features, depending on your desired analysis (shape, intensity), by clicking on the "Features..." button:

Image

The model will then be saved to the specified file location when you hit the "Train" button.

Note: For technical reasons, the model files are not compatible with traditional Trainable Weka Segmentation.

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