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I do have the retinotopy.fmriprep repo (with_slicetiming branch) installed as a submodule named fmriprep under cneuromod-things/retinotopy, but my install is messy (I made changes to the stimuli sub-submodule that I can't push). Might be simplest to remove and reinstall cleanly.
I can't see the retinotopy.fmriprep repo on the cneuromod github (is it private?). I worked from the with_slicetiming branch, would it make sense to merge it into main? Or leave it as-is?
I also can't see the fmriprep/sourcedata/retinotopy submodule which should point to the cneuromod.retinotopy repo on github; my current version on beluga points to a detached head at 1758b9f. Can we validate that this is up-to-date (both the links within the cneuromod-things repo, and the ones between repos on github)?
Can we also validate that cneuromod.retinotopy contains *events.tsv files under each sub-0*/ses-0*/func folder that contain trialwise metrics? I do have local .tsv files under cneuromod-things/retinotopy/fmriprep/sourcedada/retinotopy, some are local files and other are symbolic links (not sure why).
Apparently I modified my local fmriprep/sourcedata/retinotopy/stimuli sub-submodule but failed to update the head that the submodule points toward. Might be worth reinstalling fmriprep/sourcedata/retinotopy/ (cneuromod.retinotopy) and making sure its stimuli submodule points to the right branch from retino.stimuli (with the aperture masks).
Once the nested repo structure (fmriprep/sourcedata/retinotopy/stimuli) is validated on github, perhaps reinstall retinotopy.fmriprep as a submodule called fmriprep under cneuromod-things/retinotopy to replace the old one.
The text was updated successfully, but these errors were encountered:
I do have the
retinotopy.fmriprep
repo (with_slicetiming
branch) installed as a submodule namedfmriprep
undercneuromod-things/retinotopy
, but my install is messy (I made changes to thestimuli
sub-submodule that I can't push). Might be simplest to remove and reinstall cleanly.retinotopy.fmriprep
repo on the cneuromod github (is it private?). I worked from thewith_slicetiming
branch, would it make sense to merge it intomain
? Or leave it as-is?fmriprep/sourcedata/retinotopy
submodule which should point to thecneuromod.retinotopy
repo on github; my current version on beluga points to a detached head at1758b9f
. Can we validate that this is up-to-date (both the links within the cneuromod-things repo, and the ones between repos on github)?cneuromod.retinotopy
contains*events.tsv
files under eachsub-0*/ses-0*/func
folder that contain trialwise metrics? I do have local .tsv files undercneuromod-things/retinotopy/fmriprep/sourcedada/retinotopy
, some are local files and other are symbolic links (not sure why).fmriprep/sourcedata/retinotopy/stimuli
sub-submodule but failed to update the head that the submodule points toward. Might be worth reinstallingfmriprep/sourcedata/retinotopy/
(cneuromod.retinotopy
) and making sure itsstimuli
submodule points to the right branch fromretino.stimuli
(with the aperture masks).fmriprep/sourcedata/retinotopy/stimuli
) is validated on github, perhaps reinstallretinotopy.fmriprep
as a submodule calledfmriprep
undercneuromod-things/retinotopy
to replace the old one.The text was updated successfully, but these errors were encountered: