diff --git a/cryosparc/job.py b/cryosparc/job.py index 6cd38c8a..71e3ddfc 100644 --- a/cryosparc/job.py +++ b/cryosparc/job.py @@ -106,7 +106,6 @@ def refresh(self): self._doc = self.cs.cli.get_job(self.project_uid, self.uid) # type: ignore return self - @property def dir(self) -> PurePosixPath: """ Get the path to the job directory. diff --git a/cryosparc/project.py b/cryosparc/project.py index 20809d9b..9b874afd 100644 --- a/cryosparc/project.py +++ b/cryosparc/project.py @@ -46,7 +46,6 @@ def refresh(self): self._doc = self.cs.cli.get_project(self.uid) # type: ignore return self - @property def dir(self) -> PurePosixPath: """ Get the path to the project directory. diff --git a/docs/examples/connect_series_to_class3D.ipynb b/docs/examples/connect_series_to_class3D.ipynb index 53be514c..43f8b9e0 100644 --- a/docs/examples/connect_series_to_class3D.ipynb +++ b/docs/examples/connect_series_to_class3D.ipynb @@ -61,7 +61,7 @@ "desired_volume_series = 0\n", "\n", "series_path = var3Ddisp_job.load_output(f\"series_{desired_volume_series}\")[\"series/path\"][0]\n", - "series_path = str(project.dir / series_path)" + "series_path = str(project.dir() / series_path)" ] }, { diff --git a/docs/examples/cryolo.ipynb b/docs/examples/cryolo.ipynb index e7f6b5f5..f1d1e34a 100644 --- a/docs/examples/cryolo.ipynb +++ b/docs/examples/cryolo.ipynb @@ -312,7 +312,7 @@ " \"--train_image_folder train_image \"\n", " \"--train_annot_folder train_annot\"\n", " ).split(\" \"),\n", - " cwd=job.dir,\n", + " cwd=job.dir(),\n", ")" ] }, @@ -337,7 +337,7 @@ "source": [ "job.subprocess(\n", " \"cryolo_train.py -c config_cryolo.json -w 5 -g 0 -e 15\".split(\" \"),\n", - " cwd=job.dir,\n", + " cwd=job.dir(),\n", " mute=True,\n", " checkpoint=True,\n", " checkpoint_line_pattern=r\"Epoch \\d+/\\d+\", # e.g., \"Epoch 42/200\"\n", @@ -364,7 +364,7 @@ "job.mkdir(\"boxfiles\")\n", "job.subprocess(\n", " \"cryolo_predict.py -c config_cryolo.json -w cryolo_model.h5 -i full_data -g 0 -o boxfiles -t 0.3\".split(\" \"),\n", - " cwd=job.dir,\n", + " cwd=job.dir(),\n", " mute=True,\n", " checkpoint=True,\n", ")" @@ -395,7 +395,7 @@ "\n", " starfile_name = micrograph_name.rsplit(\".\", 1)[0] + \".star\"\n", " starfile_path = \"boxfiles/STAR/\" + starfile_name\n", - " locations = star.read(job.dir / starfile_path)[\"\"]\n", + " locations = star.read(job.dir() / starfile_path)[\"\"]\n", " center_x = locations[\"rlnCoordinateX\"] / width\n", " center_y = locations[\"rlnCoordinateY\"] / height\n", "\n", diff --git a/docs/examples/delete-rejected-exposures.ipynb b/docs/examples/delete-rejected-exposures.ipynb index a90fa40e..9da36ed5 100644 --- a/docs/examples/delete-rejected-exposures.ipynb +++ b/docs/examples/delete-rejected-exposures.ipynb @@ -53,7 +53,7 @@ "from pathlib import Path\n", "\n", "project = cs.find_project(\"P251\")\n", - "project_dir = Path(project.dir)" + "project_dir = Path(project.dir())" ] }, {