cws-thesis.tex

\documentclass[chap]{thesis}
%indent subsequent lines of captions
\usepackage[labelsep=period,justification=centering]{caption}
%bold caption (needed with caption package to restore boldface.)
\renewcommand{\captionfont}{\bfseries}
%notes to self in color
\usepackage{color}
%Dan: sorts citations like [5, 3, 15] -> [3, 5, 15] !
% -- courtesy of Dan Ibanez
\usepackage{cite}
%Dan: fixes the "numbering starts in the list of figures" problem !
%http://tex.stackexchange.com/questions/36304/ignore-citations-in-captions-in-list-of-figures-when-numbering
%http://ctan.mackichan.com/bibliography/bibtex/contrib/doc/btxFAQ.pdf%
% -- courtesy of Dan Ibanez
\usepackage{notoccite}
%math
\usepackage{amsmath}
\usepackage{amssymb}
%figures - convert eps to pdf files for pdflatex
\usepackage{graphicx}
\usepackage{epstopdf}
%algorithms and pseudo code
\usepackage{algorithm}
\usepackage[noend]{algpseudocode}
%fancy captions for figures
\usepackage{subcaption}
%units for parma tables
\usepackage{siunitx}
%formatting control
\usepackage{placeins}
%import tex and associated files from sub-dirs
\usepackage{import}
%Inferior PDF viewers (Adobe Acrobat lol) create red/green
%blocking around links.
%When using hyperref, but you can't just tell OGE their PDF
%viewers are terrible.
%When submitting your thesis, comment out hyperref
% -- courtesy of Dan Ibanez
\usepackage{hyperref}
%verbatim code listings
\usepackage{listings}
\lstset{language={},basicstyle=\footnotesize\ttfamily}

%The IEEE 2016 Editorial Style Manual does not allow breaks after the ':' char
% so we add it to the default 'url.sty' list of nobreak chars.
\renewcommand*{\UrlNoBreaks}{\do\(\do\[\do\{\do\<\do\:}%

%The IEEE 2016 Editorial Style Manual uses 'Fig.' instead of 'Figure'
\renewcommand{\figurename}{Fig.}

% Attribution of previously published work
% -- courtesy of Justin Lapre
% note, I had to disable the 'alt.interword.spacing' in the IEEE bst file
% https://github.com/SCOREC/scorec-refs/commit/a35abe0e1fe55786c983c65e532636b2beb85a06
% to avoid problems with urls in references
\makeatletter
\def\blfootnote{\xdef\@thefnmark{}\@footnotetext}
\makeatother
\usepackage{bibentry}
\nobibliography*

%formatting parma tables {
\newcolumntype{F}[2]{
  S[table-format=#1.#2,round-integer-to-decimal,round-mode=places,round-precision=#2]%
}
\newcolumntype{E}[3]{
  S[table-format=#1.#2,round-mode=places,round-precision=#2,table-figures-exponent=#3]%
}
%end table formatting }

\begin{document}
\include{title-phd}
\include{ack}
\include{abstract}
\include{intro}
\include{parma}
\include{workflows}
\include{inmem}
\include{applications}
\include{conclusion}
\include{rpibib}
\include{appendix}
\end{document}