.travis.yml

# Sample .travis.yml for R projects

language: r
r: bioc-devel
dist: trusty
sudo: required

matrix:
  include:
   - os: linux
     r: release
   - os: linux
     r: devel
     env: R_CODECOV=true
     
r_binary_packages: 
  - BiocStyle
  - lme4
  - GGally
  - ggplot2
  - reshape2
  - data.table
  - knitr
  - stringr
  - NMF
  - rsvd
  - RColorBrewer

before_install:
  - R -e 'install.packages("devtools")'
  - tlmgr install index

install:
  - R -e 'devtools::install_deps(dep = T,type="source")'

bioc_packages:
  - GSEABase
  - limma
  - TxDb.Hsapiens.UCSC.hg19.knownGene

cache: 
  packages: TRUE
  
warnings_are_errors: false 

use_bioc: true

bioc_required: true

env:
 global:
   - CRAN: http://cran.rstudio.com

notifications:
  email:
    on_success: change
    on_failure: change
    
after_success:
  -  if [[ "${R_CODECOV}" ]]; then R -e 'covr::codecov()'; fi