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N bases prevent classification of reads #37

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bounlu opened this issue Feb 1, 2024 · 0 comments
Open

N bases prevent classification of reads #37

bounlu opened this issue Feb 1, 2024 · 0 comments

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@bounlu
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bounlu commented Feb 1, 2024

When using xenome classify, if the reads in the FASTQ file include N, those reads go to neither, which may be a lot. Does it mean there is an identical sequence matching algorithm behind rather than an alignment process that cannot handle with N bases?
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