diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 00000000..5176ed9c --- /dev/null +++ b/.dockerignore @@ -0,0 +1,331 @@ +### JetBrains template +# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider +# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839 + +# User-specific stuff +.idea/**/workspace.xml +.idea/**/tasks.xml +.idea/**/usage.statistics.xml +.idea/**/dictionaries +.idea/**/shelf + +# Generated files +.idea/**/contentModel.xml + +# Sensitive or high-churn files +.idea/**/dataSources/ +.idea/**/dataSources.ids +.idea/**/dataSources.local.xml +.idea/**/sqlDataSources.xml +.idea/**/dynamic.xml +.idea/**/uiDesigner.xml +.idea/**/dbnavigator.xml + +# Gradle +.idea/**/gradle.xml +.idea/**/libraries + +# Gradle and Maven with auto-import +# When using Gradle or Maven with auto-import, you should exclude module files, +# since they will be recreated, and may cause churn. Uncomment if using +# auto-import. +# .idea/artifacts +# .idea/compiler.xml +# .idea/jarRepositories.xml +# .idea/modules.xml +# .idea/*.iml +# .idea/modules +# *.iml +# *.ipr + +# CMake +cmake-build-*/ + +# Mongo Explorer plugin +.idea/**/mongoSettings.xml + +# File-based project format +*.iws + +# IntelliJ +out/ + +# mpeltonen/sbt-idea plugin +.idea_modules/ + +# JIRA plugin +atlassian-ide-plugin.xml + +# Cursive Clojure plugin +.idea/replstate.xml + +# Crashlytics plugin (for Android Studio and IntelliJ) +com_crashlytics_export_strings.xml +crashlytics.properties +crashlytics-build.properties +fabric.properties + +# Editor-based Rest Client +.idea/httpRequests + +# Android studio 3.1+ serialized cache file +.idea/caches/build_file_checksums.ser + +### Node template +# Logs +logs +*.log +npm-debug.log* +yarn-debug.log* +yarn-error.log* +lerna-debug.log* + +# Diagnostic reports (https://nodejs.org/api/report.html) +report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json + +# Runtime data +pids +*.pid +*.seed +*.pid.lock + +# Directory for instrumented libs generated by jscoverage/JSCover +lib-cov + +# Coverage directory used by tools like istanbul +coverage +*.lcov + +# nyc test coverage +.nyc_output + +# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files) +.grunt + +# Bower dependency directory (https://bower.io/) +bower_components + +# node-waf configuration +.lock-wscript + +# Compiled binary addons (https://nodejs.org/api/addons.html) +build/Release + +# Dependency directories +node_modules/ +jspm_packages/ + +# Snowpack dependency directory (https://snowpack.dev/) +web_modules/ + +# TypeScript cache +*.tsbuildinfo + +# Optional npm cache directory +.npm + +# Optional eslint cache +.eslintcache + +# Microbundle cache +.rpt2_cache/ +.rts2_cache_cjs/ +.rts2_cache_es/ +.rts2_cache_umd/ + +# Optional REPL history +.node_repl_history + +# Output of 'npm pack' +*.tgz + +# Yarn Integrity file +.yarn-integrity + +# dotenv environment variables file +.env +.env.test + +# parcel-bundler cache (https://parceljs.org/) +.cache +.parcel-cache + +# Next.js build output +.next +out + +# Nuxt.js build / generate output +.nuxt +dist + +# Gatsby files +.cache/ +# Comment in the public line in if your project uses Gatsby and not Next.js +# https://nextjs.org/blog/next-9-1#public-directory-support +# public + +# vuepress build output +.vuepress/dist + +# Serverless directories +.serverless/ + +# FuseBox cache +.fusebox/ + +# DynamoDB Local files +.dynamodb/ + +# TernJS port file +.tern-port + +# Stores VSCode versions used for testing VSCode extensions +.vscode-test + +# yarn v2 +.yarn/cache +.yarn/unplugged +.yarn/build-state.yml +.yarn/install-state.gz +.pnp.* + +### Python template +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ +cover/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +.pybuilder/ +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +# .python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# pytype static type analyzer +.pytype/ + +# Cython debug symbols +cython_debug/ + diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 00000000..0f9efb98 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,71 @@ +name: CI + +on: + push: + branches: + - 'main' + - 'releases/**' + pull_request: + branches: + - 'main' + - 'releases/**' + +jobs: + pytest: + name: Backend Pytest Job + strategy: + matrix: + python-version: [ "3.8" ,"3.9", "3.10" ] + runs-on: ubuntu-latest + steps: + #---------------------------------------------- + # check-out repo and set-up python + #---------------------------------------------- + - uses: actions/checkout@v2 + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v2 + with: + python-version: ${{ matrix.python-version }} + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + version: 1.4.1 + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + #---------------------------------------------- + # load cached venv if cache exists + #---------------------------------------------- + - name: Load cached venv + id: cached-poetry-dependencies + uses: actions/cache@v2 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + #---------------------------------------------- + # install dependencies if cache does not exist + #---------------------------------------------- + - name: Install dependencies + if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + run: poetry install --no-interaction --no-root + #---------------------------------------------- + # install your root project, if required + #---------------------------------------------- + - name: Install library + run: poetry install --no-interaction --all-extras + #----------------------------------------- + # Run Pytest + #--------------------------------------- + - name: Run tests + run: | + source .venv/bin/activate + pytest --cov=datachecks --cov-report=xml -p no:warnings ./tests/* + + #----------------------------------------- + # Run Pytest + #--------------------------------------- + - name: Upload coverage to Codecov + uses: codecov/codecov-action@v3 diff --git a/.gitignore b/.gitignore index a61103be..5563cb56 100644 --- a/.gitignore +++ b/.gitignore @@ -124,4 +124,4 @@ processor/runnotebook.ipynb .redis* # Poetry -poetry.lock \ No newline at end of file +#poetry.lock \ No newline at end of file diff --git a/README.md b/README.md index ce145bb9..70519e84 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,11 @@

License - + + Versions + coverage + coverage + Status

## What is `datachecks`? diff --git a/datachecks/core/datasource/base.py b/datachecks/core/datasource/base.py new file mode 100644 index 00000000..c7b5935a --- /dev/null +++ b/datachecks/core/datasource/base.py @@ -0,0 +1,103 @@ +# Copyright 2022-present, the Waterdip Labs Pvt. Ltd. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from abc import ABC, abstractmethod +from dataclasses import asdict +from enum import Enum +from sqlite3 import Connection +from typing import Dict, Any, List, Union + +from opensearchpy import OpenSearch +from sqlalchemy import URL, create_engine, text + + +class DataSource(ABC): + """ + Abstract class for data sources + """ + def __init__( + self, + data_source_name: str, + data_connection: Dict + ): + self.data_source_name: str = data_source_name + self.data_connection: Dict = data_connection + + def connect(self) -> Any: + """ + Connect to the data source + """ + raise NotImplementedError("connect method is not implemented") + + def is_connected(self) -> bool: + """ + Check if the data source is connected + """ + raise NotImplementedError("is_connected method is not implemented") + + +class SearchIndexDataSource(DataSource): + """ + Abstract class for search index data sources + """ + def __init__( + self, + data_source_name: str, + data_connection: Dict + ): + super().__init__(data_source_name, data_connection) + + self.client = None + + def query_get_document_count(self, index_name: str, filter: str = None) -> int: + """ + Get the document count + :param index_name: name of the index + :param filter: optional filter + :return: count of documents + """ + raise NotImplementedError("query_get_document_count method is not implemented") + + +class SQLDatasource(DataSource): + """ + Abstract class for SQL data sources + """ + def __init__( + self, + data_source_name: str, + data_source_properties: Dict + ): + super().__init__(data_source_name, data_source_properties) + + self.connection: Union[Connection, None] = None + + def is_connected(self) -> bool: + """ + Check if the data source is connected + """ + return self.connection is not None + + def query_get_row_count(self, table: str, filter: str = None) -> int: + """ + Get the document count + :param index_name: name of the index + :param filter: optional filter + :return: count of documents + """ + query = "SELECT COUNT(*) FROM {}".format(table) + if filter: + query += " WHERE {}".format(filter) + + return self.connection.execute(text(query)).fetchone()[0] diff --git a/datachecks/core/datasource/data_source.py b/datachecks/core/datasource/data_source.py deleted file mode 100644 index 736bfeab..00000000 --- a/datachecks/core/datasource/data_source.py +++ /dev/null @@ -1,232 +0,0 @@ -# Copyright 2022-present, the Waterdip Labs Pvt. Ltd. -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -from abc import ABC, abstractmethod -from dataclasses import asdict -from enum import Enum -from sqlite3 import Connection -from typing import Dict, Any, List, Union - -from opensearchpy import OpenSearch -from sqlalchemy import URL, create_engine, text - -from datachecks.core.configuration.configuration import DataSourceConfiguration - - -class DataSource(ABC): - """ - Abstract class for data sources - """ - def __init__( - self, - data_source_name: str, - data_connection: Dict - ): - self.data_source_name: str = data_source_name - self.data_connection: Dict = data_connection - - def connect(self) -> Any: - """ - Connect to the data source - """ - raise NotImplementedError("connect method is not implemented") - - def is_connected(self) -> bool: - """ - Check if the data source is connected - """ - raise NotImplementedError("is_connected method is not implemented") - - -class SearchIndexDataSource(DataSource): - """ - Abstract class for search index data sources - """ - def __init__( - self, - data_source_name: str, - data_connection: Dict - ): - super().__init__(data_source_name, data_connection) - - self.client = None - - def query_get_document_count(self, index_name: str, filter: str = None) -> int: - """ - Get the document count - :param index_name: name of the index - :param filter: optional filter - :return: count of documents - """ - raise NotImplementedError("query_get_document_count method is not implemented") - - -class OpenSearchSearchIndexDataSource(SearchIndexDataSource): - """ - OpenSearch data source - """ - def __init__( - self, - data_source_name: str, - data_connection: Dict - ): - super().__init__(data_source_name, data_connection) - - def connect(self) -> OpenSearch: - """ - Connect to the data source - """ - - auth = (self.data_connection.get('username'), self.data_connection.get('password')) - host = self.data_connection.get('host') - port = int(self.data_connection.get('port')) - self.client = OpenSearch( - hosts=[{'host': host, 'port': port}], - http_auth=auth, - use_ssl=True, - verify_certs=False, - ca_certs=False - ) - return self.client - - def is_connected(self) -> bool: - """ - Check if the data source is connected - """ - return self.client.ping() - - def query_get_document_count(self, index_name: str, filter: str = None) -> int: - """ - Get the document count - :param index_name: name of the index - :param filter: optional filter - """ - response = self.client.count(index=index_name, body=filter) - - return response['count'] - - -class SQLDatasource(DataSource): - """ - Abstract class for SQL data sources - """ - def __init__( - self, - data_source_name: str, - data_source_properties: Dict - ): - super().__init__(data_source_name, data_source_properties) - - self.connection: Union[Connection, None] = None - - def is_connected(self) -> bool: - """ - Check if the data source is connected - """ - return self.connection is not None - - def query_get_row_count(self, table: str, filter: str = None) -> int: - """ - Get the document count - :param index_name: name of the index - :param filter: optional filter - :return: count of documents - """ - query = "SELECT COUNT(*) FROM {}".format(table) - if filter: - query += " WHERE {}".format(filter) - - return self.connection.execute(text(query)).fetchone()[0] - - -class PostgresSQLDatasource(SQLDatasource): - - def __init__( - self, - data_source_name: str, - data_source_properties: Dict - ): - super().__init__(data_source_name, data_source_properties) - - def connect(self) -> Any: - """ - Connect to the data source - """ - url = URL.create( - drivername="postgresql", - username=self.data_connection.get('username'), - password=self.data_connection.get('password'), - host=self.data_connection.get('host'), - port=self.data_connection.get('port'), - database=self.data_connection.get('database') - ) - engine = create_engine(url) - self.connection = engine.connect() - return self.connection - - -class DataSourceManager: - """ - Data source manager. - This class is responsible for managing the data sources. - - """ - def __init__(self, config: List[DataSourceConfiguration]): - self.data_source_configs: List[DataSourceConfiguration] = config - self.data_sources: Dict[str, DataSource] = {} - self._initialize_data_sources() - - def _initialize_data_sources(self): - """ - Initialize the data sources - :return: - """ - for data_source_config in self.data_source_configs: - self.data_sources[data_source_config.name] = self.create_data_source(data_source_config=data_source_config) - self.data_sources[data_source_config.name].connect() - - @staticmethod - def create_data_source(data_source_config: DataSourceConfiguration) -> DataSource: - """ - Create a data source - :param data_source_config: data source configuration - :return: data source - """ - if data_source_config.type == 'opensearch': - return OpenSearchSearchIndexDataSource( - data_source_name=data_source_config.name, - data_connection=asdict(data_source_config.connection_config), - ) - elif data_source_config.type == 'postgres': - return PostgresSQLDatasource( - data_source_name=data_source_config.name, - data_source_properties=asdict(data_source_config.connection_config) - ) - else: - raise ValueError(f"Unsupported data source type: {data_source_config.type}") - - def get_data_source(self, data_source_name: str) -> DataSource: - """ - Get a data source - :param data_source_name: - :return: - """ - return self.data_sources[data_source_name] - - def get_data_source_names(self) -> List[str]: - """ - Get the data source names - :return: - """ - return list(self.data_sources.keys()) diff --git a/datachecks/core/datasource/manager.py b/datachecks/core/datasource/manager.py new file mode 100644 index 00000000..e43d3c2f --- /dev/null +++ b/datachecks/core/datasource/manager.py @@ -0,0 +1,63 @@ +from dataclasses import asdict +from typing import List, Dict + +from datachecks.core.configuration.configuration import DataSourceConfiguration +from datachecks.core.datasource.base import DataSource +from datachecks.core.datasource.opensearch import OpenSearchSearchIndexDataSource +from datachecks.core.datasource.postgres import PostgresSQLDatasource + + +class DataSourceManager: + """ + Data source manager. + This class is responsible for managing the data sources. + + """ + def __init__(self, config: List[DataSourceConfiguration]): + self.data_source_configs: List[DataSourceConfiguration] = config + self.data_sources: Dict[str, DataSource] = {} + self._initialize_data_sources() + + def _initialize_data_sources(self): + """ + Initialize the data sources + :return: + """ + for data_source_config in self.data_source_configs: + self.data_sources[data_source_config.name] = self.create_data_source(data_source_config=data_source_config) + self.data_sources[data_source_config.name].connect() + + @staticmethod + def create_data_source(data_source_config: DataSourceConfiguration) -> DataSource: + """ + Create a data source + :param data_source_config: data source configuration + :return: data source + """ + if data_source_config.type == 'opensearch': + return OpenSearchSearchIndexDataSource( + data_source_name=data_source_config.name, + data_connection=asdict(data_source_config.connection_config), + ) + elif data_source_config.type == 'postgres': + return PostgresSQLDatasource( + data_source_name=data_source_config.name, + data_source_properties=asdict(data_source_config.connection_config) + ) + else: + raise ValueError(f"Unsupported data source type: {data_source_config.type}") + + def get_data_source(self, data_source_name: str) -> DataSource: + """ + Get a data source + :param data_source_name: + :return: + """ + return self.data_sources[data_source_name] + + def get_data_source_names(self) -> List[str]: + """ + Get the data source names + :return: + """ + return list(self.data_sources.keys()) diff --git a/datachecks/core/datasource/opensearch.py b/datachecks/core/datasource/opensearch.py new file mode 100644 index 00000000..f3d9f33d --- /dev/null +++ b/datachecks/core/datasource/opensearch.py @@ -0,0 +1,50 @@ +from typing import Dict + +from opensearchpy import OpenSearch + +from datachecks.core.datasource.base import SearchIndexDataSource + + +class OpenSearchSearchIndexDataSource(SearchIndexDataSource): + """ + OpenSearch data source + """ + def __init__( + self, + data_source_name: str, + data_connection: Dict + ): + super().__init__(data_source_name, data_connection) + + def connect(self) -> OpenSearch: + """ + Connect to the data source + """ + + auth = (self.data_connection.get('username'), self.data_connection.get('password')) + host = self.data_connection.get('host') + port = int(self.data_connection.get('port')) + self.client = OpenSearch( + hosts=[{'host': host, 'port': port}], + http_auth=auth, + use_ssl=True, + verify_certs=False, + ca_certs=False + ) + return self.client + + def is_connected(self) -> bool: + """ + Check if the data source is connected + """ + return self.client.ping() + + def query_get_document_count(self, index_name: str, filter: str = None) -> int: + """ + Get the document count + :param index_name: name of the index + :param filter: optional filter + """ + response = self.client.count(index=index_name, body=filter) + + return response['count'] \ No newline at end of file diff --git a/datachecks/core/datasource/postgres.py b/datachecks/core/datasource/postgres.py new file mode 100644 index 00000000..0f02048f --- /dev/null +++ b/datachecks/core/datasource/postgres.py @@ -0,0 +1,31 @@ +from typing import Dict, Any + +from sqlalchemy import create_engine, URL + +from datachecks.core.datasource.base import SQLDatasource + + +class PostgresSQLDatasource(SQLDatasource): + + def __init__( + self, + data_source_name: str, + data_source_properties: Dict + ): + super().__init__(data_source_name, data_source_properties) + + def connect(self) -> Any: + """ + Connect to the data source + """ + url = URL.create( + drivername="postgresql", + username=self.data_connection.get('username'), + password=self.data_connection.get('password'), + host=self.data_connection.get('host'), + port=self.data_connection.get('port'), + database=self.data_connection.get('database') + ) + engine = create_engine(url) + self.connection = engine.connect() + return self.connection diff --git a/datachecks/core/inspect.py b/datachecks/core/inspect.py index 18a2a2a1..3228afe7 100644 --- a/datachecks/core/inspect.py +++ b/datachecks/core/inspect.py @@ -14,8 +14,8 @@ from typing import List, Dict from datachecks.core.configuration.configuration import Configuration -from datachecks.core.datasource.data_source import DataSourceManager -from datachecks.core.metric.metric import MetricManager +from datachecks.core.datasource.manager import DataSourceManager +from datachecks.core.metric.manager import MetricManager class Inspect: diff --git a/datachecks/core/metric/metric.py b/datachecks/core/metric/base.py similarity index 76% rename from datachecks/core/metric/metric.py rename to datachecks/core/metric/base.py index 33933da6..967c2d41 100644 --- a/datachecks/core/metric/metric.py +++ b/datachecks/core/metric/base.py @@ -18,8 +18,9 @@ from enum import Enum from typing import Dict, List -from datachecks.core.configuration.configuration import MetricConfiguration as MetricConfigurationV1 -from datachecks.core.datasource.data_source import DataSource, SearchIndexDataSource, DataSourceManager, SQLDatasource +from datachecks.core.configuration.configuration import MetricConfiguration +from datachecks.core.datasource.base import DataSource, SearchIndexDataSource, SQLDatasource +from datachecks.core.datasource.manager import DataSourceManager class MetricsType(str, Enum): @@ -201,45 +202,3 @@ def _generate_metric_value(self): ) else: raise ValueError("Invalid data source type") - - -class MetricManager: - - def __init__( - self, - metric_config: Dict[str, List[MetricConfigurationV1]], - data_source_manager: DataSourceManager - ): - self.data_source_manager = data_source_manager - self.metrics = {} - self._build_metrics(config=metric_config) - - def _build_metrics(self, config: Dict[str, List[MetricConfigurationV1]]): - for data_source, metric_list in config.items(): - for metric_config in metric_list: - if metric_config.metric_type == MetricsType.DOCUMENT_COUNT: - - metric = DocumentCountMetrics( - name=metric_config.name, - data_source=self.data_source_manager.get_data_source(data_source), - filter=asdict(metric_config.filter), - index_name=metric_config.index - ) - self.metrics[metric.metric_identity] = metric - elif metric_config.metric_type == MetricsType.ROW_COUNT: - metric = RowCountMetrics( - name=metric_config.name, - data_source=self.data_source_manager.get_data_source(data_source), - filter=asdict(metric_config.filter), - table_name=metric_config.table - ) - self.metrics[metric.metric_identity] = metric - else: - raise ValueError("Invalid metric type") - - @property - def get_metrics(self): - return self.metrics - - def get_metric(self, metric_identity: str): - return self.metrics.get(metric_identity, None) diff --git a/datachecks/core/metric/manager.py b/datachecks/core/metric/manager.py new file mode 100644 index 00000000..10858caf --- /dev/null +++ b/datachecks/core/metric/manager.py @@ -0,0 +1,48 @@ +from dataclasses import asdict +from typing import Dict, List + +from datachecks.core.configuration.configuration import MetricConfiguration +from datachecks.core.datasource.manager import DataSourceManager +from datachecks.core.metric.base import MetricsType, DocumentCountMetrics, RowCountMetrics + + +class MetricManager: + + def __init__( + self, + metric_config: Dict[str, List[MetricConfiguration]], + data_source_manager: DataSourceManager + ): + self.data_source_manager = data_source_manager + self.metrics = {} + self._build_metrics(config=metric_config) + + def _build_metrics(self, config: Dict[str, List[MetricConfiguration]]): + for data_source, metric_list in config.items(): + for metric_config in metric_list: + if metric_config.metric_type == MetricsType.DOCUMENT_COUNT: + + metric = DocumentCountMetrics( + name=metric_config.name, + data_source=self.data_source_manager.get_data_source(data_source), + filter=asdict(metric_config.filter), + index_name=metric_config.index + ) + self.metrics[metric.metric_identity] = metric + elif metric_config.metric_type == MetricsType.ROW_COUNT: + metric = RowCountMetrics( + name=metric_config.name, + data_source=self.data_source_manager.get_data_source(data_source), + filter=asdict(metric_config.filter), + table_name=metric_config.table + ) + self.metrics[metric.metric_identity] = metric + else: + raise ValueError("Invalid metric type") + + @property + def get_metrics(self): + return self.metrics + + def get_metric(self, metric_identity: str): + return self.metrics.get(metric_identity, None) diff --git a/docker-compose.yaml b/docker-compose.yaml index 68ac9a41..a3dfd53b 100644 --- a/docker-compose.yaml +++ b/docker-compose.yaml @@ -1,14 +1,14 @@ version: '3' services: - opensearch-node1: # This is also the hostname of the container within the Docker network (i.e. https://opensearch-node1/) + dc-opensearch: # This is also the hostname of the container within the Docker network (i.e. https://dc-opensearch/) image: opensearchproject/opensearch:latest # Specifying the latest available image - modify if you want a specific version - container_name: opensearch-node1 + container_name: dc-opensearch environment: - cluster.name=opensearch-cluster # Name the cluster - - node.name=opensearch-node1 # Name the node that will run in this container - - discovery.seed_hosts=opensearch-node1,opensearch-node2 # Nodes to look for when discovering the cluster - - cluster.initial_cluster_manager_nodes=opensearch-node1,opensearch-node2 # Nodes eligible to serve as cluster manager + - node.name=dc-opensearch # Name the node that will run in this container + - discovery.seed_hosts=dc-opensearch # Nodes to look for when discovering the cluster + - cluster.initial_cluster_manager_nodes=dc-opensearch # Nodes eligible to serve as cluster manager - bootstrap.memory_lock=true # Disable JVM heap memory swapping - "OPENSEARCH_JAVA_OPTS=-Xms512m -Xmx512m" # Set min and max JVM heap sizes to at least 50% of system RAM ulimits: @@ -19,50 +19,18 @@ services: soft: 65536 # Maximum number of open files for the opensearch user - set to at least 65536 hard: 65536 volumes: - - opensearch-data1:/usr/share/opensearch/data # Creates volume called opensearch-data1 and mounts it to the container + - opensearch-data:/usr/share/opensearch/data # Creates volume called opensearch-data and mounts it to the container ports: - 9201:9200 # REST API - 9601:9600 # Performance Analyzer networks: - opensearch-net # All of the containers will join the same Docker bridge network - opensearch-node2: - image: opensearchproject/opensearch:latest # This should be the same image used for opensearch-node1 to avoid issues - container_name: opensearch-node2 - environment: - - cluster.name=opensearch-cluster - - node.name=opensearch-node2 - - discovery.seed_hosts=opensearch-node1,opensearch-node2 - - cluster.initial_cluster_manager_nodes=opensearch-node1,opensearch-node2 - - bootstrap.memory_lock=true - - "OPENSEARCH_JAVA_OPTS=-Xms512m -Xmx512m" - ulimits: - memlock: - soft: -1 - hard: -1 - nofile: - soft: 65536 - hard: 65536 - volumes: - - opensearch-data2:/usr/share/opensearch/data - networks: - - opensearch-net - opensearch-dashboards: - image: opensearchproject/opensearch-dashboards:latest # Make sure the version of opensearch-dashboards matches the version of opensearch installed on other nodes - container_name: opensearch-dashboards - ports: - - 5601:5601 # Map host port 5601 to container port 5601 - expose: - - "5601" # Expose port 5601 for web access to OpenSearch Dashboards - environment: - OPENSEARCH_HOSTS: '["https://opensearch-node1:9200","https://opensearch-node2:9200"]' # Define the OpenSearch nodes that OpenSearch Dashboards will query - networks: - - opensearch-net - postgres: + dc-postgres: container_name: postgres_container image: postgres environment: - POSTGRES_USER: postgres - POSTGRES_PASSWORD: changeme + POSTGRES_USER: dbuser + POSTGRES_PASSWORD: dbpass PGDATA: /data/postgres volumes: - postgres:/data/postgres @@ -71,20 +39,6 @@ services: networks: - postgres restart: unless-stopped - postgres1: - container_name: postgres_container1 - image: postgres - environment: - POSTGRES_USER: postgres - POSTGRES_PASSWORD: changeme - PGDATA: /data/postgres - volumes: - - postgres:/data/postgres - ports: - - "5430:5432" - networks: - - postgres - restart: unless-stopped networks: opensearch-net: @@ -92,6 +46,5 @@ networks: driver: bridge volumes: - opensearch-data1: - opensearch-data2: + opensearch-data: postgres: \ No newline at end of file diff --git a/example/run_datachecks.py b/example/run_datachecks.py index f90ed3ba..e8803e5e 100644 --- a/example/run_datachecks.py +++ b/example/run_datachecks.py @@ -4,9 +4,14 @@ if __name__ == "__main__": + + #Reding Config File configuration: Configuration = load_configuration('config.yaml') + # Generating Metrics metrics = Inspect(configuration).start() - for m in metrics: - print(m) - requests.post('https://localhost:9201/example_indices/_doc', json=m, auth=("admin", "admin"), verify=False) + + # Sending to ELK + for metric in metrics: + print(metric) + requests.post('https://localhost:9201/example_indices/_doc', json=metric, auth=("admin", "admin"), verify=False) diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 00000000..cac97ff6 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,887 @@ +# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. + +[[package]] +name = "attrs" +version = "23.1.0" +description = "Classes Without Boilerplate" +category = "dev" +optional = false +python-versions = ">=3.7" +files = [ + {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"}, + {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"}, +] + +[package.extras] +cov = ["attrs[tests]", "coverage[toml] (>=5.3)"] +dev = ["attrs[docs,tests]", "pre-commit"] +docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", 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(>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] +test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezer (>=0.4.6)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=67.8)", "time-machine (>=2.9)"] + +[extras] +opensearch = ["opensearch-py"] +postgresql = ["psycopg2", "sqlalchemy"] + +[metadata] +lock-version = "2.0" +python-versions = ">=3.8,<4.0" +content-hash = "0a7578a54956507d7e21d2eca9393784dda2f6f8fbbaa8ece8da8dbc781a7f3b" diff --git a/pyproject.toml b/pyproject.toml index efcdea2d..d9f66718 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,10 +26,18 @@ packages = [{ include = "datachecks" }] python = ">=3.8,<4.0" click = "^8.1.5" pyyaml = "^6.0" +requests = "^2.31.0" opensearch-py = { version="^2.2.0", optional=true } sqlalchemy = { version="^2.0.19", optional=true } psycopg2 = { version="^2.9.6", optional=true } +[tool.poetry.group.dev.dependencies] +pytest = "^7.1.3" +pytest-docker = "^2.0.0" +pytest-mock = "^3.10.0" +mongomock = "^4.1.2" +pre-commit = "^2.20.0" +pytest-cov = "^4.0.0" [tool.poetry.extras] # When adding, update also: README + dev deps just above diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 00000000..5e055f03 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,42 @@ +import os + +import pytest + +from opensearchpy import OpenSearch + + +def is_opensearch__responsive(host, port): + try: + client = OpenSearch( + hosts=[{'host': host, 'port': port}], + http_auth=("admin", "admin"), + use_ssl=True, + verify_certs=False, + ca_certs=False + ) + status = client.ping() + client.close() + except ConnectionError: + status = False + return status + + +@pytest.fixture(scope="session") +def docker_compose_file(pytestconfig): + base_directory = os.path.dirname(os.path.abspath(__file__)).replace("tests", "") + return os.path.join(base_directory, "docker-compose.yaml") + + +@pytest.fixture(scope="session") +def opensearch_client(docker_ip, docker_services) -> OpenSearch: + port = docker_services.port_for("dc-opensearch", 9200) + docker_services.wait_until_responsive( + timeout=60.0, pause=20, check=lambda: is_opensearch__responsive(host=docker_ip, port=port) + ) + return OpenSearch( + hosts=[{'host': docker_ip, 'port': port}], + http_auth=("admin", "admin"), + use_ssl=True, + verify_certs=False, + ca_certs=False + ) diff --git a/tests/test_databases_availability.py b/tests/test_databases_availability.py new file mode 100644 index 00000000..26dcb342 --- /dev/null +++ b/tests/test_databases_availability.py @@ -0,0 +1,5 @@ +from opensearchpy import OpenSearch + + +def test_opensearch_available(opensearch_client: OpenSearch): + assert opensearch_client.ping()