Releases: davidlougheed/strkit
Releases · davidlougheed/strkit
Version 0.15.0 alpha 12
Version 0.15.0 alpha 11
Version 0.15.0 alpha 10
Version 0.15.0 alpha 9
Version 0.15.0 alpha 8
Version 0.15.0 alpha 7
- feat!: only allow one BAM file + port more code to Rust
- feat(call)!: max reads param
- perf(call): early-skip loci with >3 reads with extremely poor (slow) alignment
- fix(call): bad logic for pure SNV peak assignment read threshold
- chore(call): eliminate abs min read threshold for SNV incorporation
- perf(call): small optimizations for lambdas
- Logging:
Full Changelog: v0.15.0-alpha.6...v0.15.0-alpha.7
Version 0.15.0 alpha 6
Version 0.15.0 alpha 5
- feat(call): output motif and ref copy num in VCF
- feat(call): output peak assign method in VCF
- feat(call): join/remap synonymous phase sets
- fix(call): vcf output with missed calls
- fix(call): don't output duplicate SNV alleles
- fix(call): handle empty allele with a warning
- fix(call): better contig format detection for snvs
- fix(call): use best representative sequence as a pseudo-consensus
- chore(call): set timeout on locks as a failsafe
- perf(call): use Rust component for cigar pair decoding
- perf(call): switch to strkit_rust_ext/numpy arrays for coords/consensus
Full Changelog: v0.15.0-alpha.4...v0.15.0-alpha.5