diff --git a/master/.doctrees/apidoc/yadg.extractors.eclab.common.doctree b/master/.doctrees/apidoc/yadg.extractors.eclab.common.doctree index 54420898..4fb9100c 100644 Binary files a/master/.doctrees/apidoc/yadg.extractors.eclab.common.doctree and b/master/.doctrees/apidoc/yadg.extractors.eclab.common.doctree differ diff --git a/master/.doctrees/apidoc/yadg.extractors.eclab.doctree b/master/.doctrees/apidoc/yadg.extractors.eclab.doctree index a9595459..0f6efe59 100644 Binary files a/master/.doctrees/apidoc/yadg.extractors.eclab.doctree and b/master/.doctrees/apidoc/yadg.extractors.eclab.doctree differ diff --git a/master/.doctrees/environment.pickle b/master/.doctrees/environment.pickle index 1e88a524..80f7b948 100644 Binary files a/master/.doctrees/environment.pickle and b/master/.doctrees/environment.pickle differ diff --git a/master/.doctrees/version.5_1.doctree b/master/.doctrees/version.5_1.doctree index 9d23bcb7..6890abe2 100644 Binary files a/master/.doctrees/version.5_1.doctree and b/master/.doctrees/version.5_1.doctree differ diff --git a/master/.doctrees/version.doctree b/master/.doctrees/version.doctree index 1d740cb0..1bd525d1 100644 Binary files a/master/.doctrees/version.doctree and b/master/.doctrees/version.doctree differ diff --git a/master/_sources/version.5_1.rst.txt b/master/_sources/version.5_1.rst.txt index 8431b067..199b8d90 100644 --- a/master/_sources/version.5_1.rst.txt +++ b/master/_sources/version.5_1.rst.txt @@ -34,7 +34,8 @@ Bug fixes in ``yadg-5.1`` include: - Fixed incorrect parsing of units in the :mod:`yadg.extractors.ezchrom.asc` parser. Now, the ``25 μV`` unit will be correctly replaced by just ``μV`` (without modifying data), which can be understood by :mod:`pint`. - Added several new I-range values to :mod:`yadg.extractors.eclab` parsers. Now, I-range values up to 130 are supported. - Fixed incorrect column name (``Energy`` to ``|Energy|``) in :mod:`yadg.extractors.eclab.mpr`. - - Removed column renaming for ``Analog IN 1`` and ``Analog IN 2`` to maintain consistency within :mod:`yadg.extractors.eclab` + - Removed column renaming for ``Analog IN 1`` and ``Analog IN 2`` to maintain consistency within :mod:`yadg.extractors.eclab`. + - Reworked parsing of ``.mpt`` file headers in :mod:`yadg.extractors.eclab.mpt`. The parser is now more stable, and the original labels are used without renaming. .. _concat_lab: https://tu.berlin/en/concat diff --git a/master/apidoc/yadg.extractors.eclab.common.html b/master/apidoc/yadg.extractors.eclab.common.html index 5b09269d..1a060c11 100644 --- a/master/apidoc/yadg.extractors.eclab.common.html +++ b/master/apidoc/yadg.extractors.eclab.common.html @@ -67,7 +67,6 @@
  • yadg.extractors.eclab.common.mpt_columns module
  • yadg.extractors.eclab.common.techniques module @@ -149,27 +148,6 @@

    eclabtechniques: Parameters for implemented techniques.The module also implements resolution determination for parameters of techniques, in get_resolution().

    -
    -
    -yadg.extractors.eclab.common.techniques.technique_params(technique: str, settings: list[str]) → tuple[str, list]
    -

    Constructs the parameter names for different techniques.

    -
    -
    Parameters:
    -
      -

    • technique – The full name of the technique.

      • -

    • settings – The list of settings from the start of an .mpt or .mps file.

      • -
    -
    -
    Returns:
    -

    The short technique name and a full list of technique parameter -names depending on what is present in the file.

    -
    -
    Return type:
    -

    tuple[str, list]

    -
    -
    -
    -
    yadg.extractors.eclab.common.techniques.param_from_key(param: str, key: int | str, to_str: bool = True) → str | float
    diff --git a/master/apidoc/yadg.extractors.eclab.html b/master/apidoc/yadg.extractors.eclab.html index 7fc175d5..f084fb22 100644 --- a/master/apidoc/yadg.extractors.eclab.html +++ b/master/apidoc/yadg.extractors.eclab.html @@ -92,6 +92,8 @@
  • Schema
  • Notes on file structure
  • Metadata
    • +
  • process_settings()
    • +
  • process_params()
  • process_header()
  • process_data()
  • extract()
    • @@ -153,7 +155,6 @@

    Subpackagesyadg.extractors.eclab.common.mpt_columns module

  • yadg.extractors.eclab.common.techniques module @@ -647,8 +648,19 @@

    MetadataThe mapping between metadata parameters between .mpr and .mpt files is not yet complete.

    -

    Code author: Nicolas Vetsch

    +

    Code author: Nicolas Vetsch, +Peter Kraus

    +
    +
    +yadg.extractors.eclab.mpt.process_settings(lines: list[str]) → dict[str, str]
    +
    + +
    +
    +yadg.extractors.eclab.mpt.process_params(technique: str, lines: list[str], locale: str) → dict[str, Any]
    +
    +
    yadg.extractors.eclab.mpt.process_header(lines: list[str], timezone: str, locale: str) → tuple[dict, list, dict]
    diff --git a/master/apidoc/yadg.extractors.html b/master/apidoc/yadg.extractors.html index 019b1c35..eb9394b4 100644 --- a/master/apidoc/yadg.extractors.html +++ b/master/apidoc/yadg.extractors.html @@ -280,6 +280,8 @@

    SubpackagesSchema

  • Notes on file structure
  • Metadata
    • +
  • process_settings()
    • +
  • process_params()
  • process_header()
  • process_data()
  • extract()
    • diff --git a/master/genindex.html b/master/genindex.html index 2df2a4da..9dc974e2 100644 --- a/master/genindex.html +++ b/master/genindex.html @@ -572,13 +572,19 @@

    P

  • process_modules() (in module yadg.extractors.eclab.mpr)
  • process_options() (in module yadg.extractors.touchstone.snp) +
    • +
  • process_params() (in module yadg.extractors.eclab.mpt)
  • process_row() (in module yadg.extractors.basic.csv)
  • process_schema() (in module yadg.core)
  • process_settings() (in module yadg.extractors.eclab.mpr) + +
    • @@ -653,18 +659,16 @@

    S

    T

    - + diff --git a/master/objects.inv b/master/objects.inv index 48c8cab7..8488cf0b 100644 Binary files a/master/objects.inv and b/master/objects.inv differ diff --git a/master/searchindex.js b/master/searchindex.js index 17b7b55f..a148e997 100644 --- a/master/searchindex.js +++ b/master/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"Acknowledgements": [[22, "acknowledgements"]], "Citing yadg": [[18, "citing-yadg"]], "Contributors": [[22, "contributors"]], "Dataschema from presets": [[26, "dataschema-from-presets"]], "Dataschema validation": [[21, "dataschema-validation"]], "Dataschema version updater": [[26, "dataschema-version-updater"]], "Developer documentation": [[19, "developer-documentation"]], "Extractor mode": [[26, "extractor-mode"]], "Formatting": [[19, "formatting"]], "How to use yadg": [[26, "how-to-use-yadg"]], "Implementing new features": [[19, "implementing-new-features"]], "Key features of yadg": [[21, "key-features-of-yadg"]], "Locale support": [[21, 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26], "xlsx": [0, 2], "xml": 13, "xo": 6, "xout": [12, 27, 30], "xp": [0, 2, 27, 29], "xpstrace": [27, 29, 30], "xr": 9, "xrd": [0, 2], "xrdml": [0, 2], "xy": [0, 2], "y": [1, 3, 10, 11, 14, 15], "y_titl": 15, "y_unit": [14, 15], "yadg": 19, "yaml": 26, "ye": 0, "year": 15, "yet": [6, 18, 26], "yield": [27, 32], "you": [6, 10, 17, 18, 22, 26, 27, 31, 32], "your": [0, 21], "z": [15, 27, 33], "zenodo": [27, 33], "zero": [6, 27, 30], "zip": [0, 2, 26, 27, 30], "zir": [6, 7], "zoom_end": 15, "zoom_start": 15, "\u03b3": 11, "\u03bcv": [27, 33]}, "titles": ["yadg package", "yadg.dgutils package", "yadg.extractors package", "agilent: For Agilent chromatograms", "basic: For tabulated data", "drycal: For MesaLabs Drycal Pro data", "eclab: For BioLogic data files", "yadg.extractors.eclab.common package", "empalc: For Empa\u2019s LC data", "example: For yadg testing", "ezchrom: For EZChrom chromatograms", "fhimcpt: For MCPT set-up at FHI", "fusion: For Fusion chromatograms", "panalytical: For Panalytical XRD data", "phi: For Phi XPS data", "quadstar: For Quadstar MS data", "tomato: For tomato outputs", "touchstone: For Touchstone VNA files", "Citing yadg", "Developer documentation", "<no title>", "Key features of yadg", "yadg: yet another datagram", "yadgdatagram", "yadgdataschema", "yadg objects", "How to use yadg", "yadg version history", "yadg version 3.1.0", "yadg version 4.0.1", "yadg version 4.1.0", "yadg version 4.2", "yadg version 5.0", "yadg version 5.1"], "titleterms": {"": 8, "0": [27, 28, 29, 30, 32], "1": [27, 28, 29, 30, 33], "2": [27, 31], "3": [27, 28], "4": [27, 29, 30, 31], "5": [27, 32, 33], "For": [3, 4, 5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17], "acknowledg": 22, "agil": 3, "anoth": 22, "asc": 10, "basic": 4, "biolog": 6, "btool": 1, "ch": 3, "chromatogram": [3, 10, 12], "cite": 18, "common": [5, 7, 13], "contributor": 22, "core": 0, "csv": [3, 4, 5, 8, 11, 12, 13], "dat": 10, "data": [4, 5, 6, 8, 13, 14, 15], "datagram": [22, 23, 25], "dataschema": 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"contributors"]], "Dataschema from presets": [[26, "dataschema-from-presets"]], "Dataschema validation": [[21, "dataschema-validation"]], "Dataschema version updater": [[26, "dataschema-version-updater"]], "Developer documentation": [[19, "developer-documentation"]], "Extractor mode": [[26, "extractor-mode"]], "Formatting": [[19, "formatting"]], "How to use yadg": [[26, "how-to-use-yadg"]], "Implementing new features": [[19, "implementing-new-features"]], "Key features of yadg": [[21, "key-features-of-yadg"]], "Locale support": [[21, "locale-support"]], "Metadata": [[3, "metadata"], [3, "id3"], [3, "id7"], [4, "metadata"], [5, "metadata"], [5, "id3"], [5, "id7"], [6, "metadata"], [6, "id4"], [8, "metadata"], [8, "id3"], [9, "metadata"], [10, "metadata"], [10, "id3"], [11, "metadata"], [11, "id3"], [12, "metadata"], [12, "id3"], [12, "id6"], [13, "metadata"], [13, "id3"], [13, "id8"], [14, "metadata"], [15, "metadata"], [16, "metadata"], [17, "metadata"]], "Metadata-only extraction": [[26, "metadata-only-extraction"]], "Notes on file structure": [[3, "notes-on-file-structure"], [6, "notes-on-file-structure"], [6, "id3"], [10, "notes-on-file-structure"], [13, "notes-on-file-structure"], [13, "id4"], [13, "id9"], [14, "notes-on-file-structure"], [15, "notes-on-file-structure"], [16, "notes-on-file-structure"], [17, "notes-on-file-structure"]], "Papers related to yadg": [[18, "papers-related-to-yadg"]], "Parser mode": [[26, "parser-mode"]], "Schema": [[3, "schema"], [3, "id2"], [3, "id6"], [4, "schema"], [5, "schema"], [5, "id2"], [5, "id6"], [6, "schema"], [6, "id2"], [8, "schema"], [8, "id2"], [9, "schema"], [10, "schema"], [10, "id2"], [11, "schema"], [11, "id2"], [12, "schema"], [12, "id2"], [12, "id5"], [13, "schema"], [13, "id2"], [13, "id7"], [14, "schema"], [15, "schema"], [16, "schema"], [17, "schema"]], "Subpackages": [[0, "subpackages"], [2, "subpackages"], [6, "subpackages"]], "TODO": [[6, null], [14, null]], "Testing": [[19, "testing"]], "Timestamping": 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    yadg version 5.1yadg.extractors.ezchrom.asc parser. Now, the 25 μV unit will be correctly replaced by just μV (without modifying data), which can be understood by pint.

  • Added several new I-range values to yadg.extractors.eclab parsers. Now, I-range values up to 130 are supported.

  • Fixed incorrect column name (Energy to |Energy|) in yadg.extractors.eclab.mpr.

    • -

  • Removed column renaming for Analog IN 1 and Analog IN 2 to maintain consistency within yadg.extractors.eclab

    • +

  • Removed column renaming for Analog IN 1 and Analog IN 2 to maintain consistency within yadg.extractors.eclab.

    • +

  • Reworked parsing of .mpt file headers in yadg.extractors.eclab.mpt. The parser is now more stable, and the original labels are used without renaming.

    • diff --git a/master/version.html b/master/version.html index 87704cf2..b3833d70 100644 --- a/master/version.html +++ b/master/version.html @@ -152,7 +152,8 @@

    yadg version 5.1yadg.extractors.ezchrom.asc parser. Now, the 25 μV unit will be correctly replaced by just μV (without modifying data), which can be understood by pint.

  • Added several new I-range values to yadg.extractors.eclab parsers. Now, I-range values up to 130 are supported.

  • Fixed incorrect column name (Energy to |Energy|) in yadg.extractors.eclab.mpr.

    • -

  • Removed column renaming for Analog IN 1 and Analog IN 2 to maintain consistency within yadg.extractors.eclab

    • +

  • Removed column renaming for Analog IN 1 and Analog IN 2 to maintain consistency within yadg.extractors.eclab.

    • +

  • Reworked parsing of .mpt file headers in yadg.extractors.eclab.mpt. The parser is now more stable, and the original labels are used without renaming.