diff --git a/2.TCGA-process.ipynb b/2.TCGA-process.ipynb index 7fee656..f43e72f 100644 --- a/2.TCGA-process.ipynb +++ b/2.TCGA-process.ipynb @@ -227,15 +227,6 @@ "snp_mutation_df.sample_id.nunique()" ] }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "##### Mutations counts by type\n", - "\n", - "Notice that mutation type codes are not standardized. For example, `5_prime_UTR_variant`, `5'UTR`, `UTR_5_PRIME` all refer to the same type of mutation." - ] - }, { "cell_type": "code", "execution_count": 7, @@ -367,6 +358,7 @@ } ], "source": [ + "# Mutations counts by type\n", "snp_mutation_df.effect.value_counts().reset_index()" ] },