-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathhow_it_works.html
120 lines (115 loc) · 7.78 KB
/
how_it_works.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="stylesheet" href="./styles.css">
<link rel="preconnect" href="https://fonts.googleapis.com">
<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
<link href="https://fonts.googleapis.com/css2?family=Roboto:wght@100;300;400;500;700&display=swap" rel="stylesheet">
<link rel="icon" href="./images/just_dna_seq.png">
<link href="https://fonts.googleapis.com/css2?family=Chakra+Petch:ital,wght@0,300;0,400;0,500;0,600;0,700;1,300;1,400;1,500;1,600;1,700&family=Merriweather:ital,wght@0,300;0,400;0,700;0,900;1,300;1,400;1,700;1,900&family=Oswald:[email protected]&family=Rajdhani:wght@300;400;500;600;700&display=swap" rel="stylesheet">
<script src="./scripts.js" defer></script>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
<title>Just DNA-Seq</title>
</head>
<body>
<!-- Top Navigation Menu -->
<div class="topnav">
<a href="#home" class="active"> </a>
<!-- Navigation links (hidden by default) -->
<div id="myLinks">
<a class="main-links" href="./index.html#just-dna-seq" class="header-element">Just-DNA-Seq:</a>
<ul>
<li><a href="./index.html#tutorial">Tutorial</a></li>
<li><a href="./index.html#report">Report example</a></li>
<li><a href="./index.html#modules">Modules</a></li>
<li><a href="./index.html#team" class="header-element">About team</a></li>
</ul>
<a class="main-links" href="./how_it_works.html" class="header-element">How it works</a>
<a class="main-links" href="./why_just_dna.html" class="header-element">Why Just-DNA-Seq?</a>
<a class="main-links" href="https://arxiv.org/abs/2403.19087" target=”_blank” class="header-element">Our paper</a>
<a class="main-links" href="https://github.com/dna-seq" target=”_blank” class="header-element">Github</a>
<a class="main-links" href="https://just-dna-seq.readthedocs.io/en/oakvar/" target=”_blank” class="header-element">Documentation</a>
<a class="main-links" href="https://longevity-genie.github.io/" target=”_blank” class="header-element">Longevity-Genie project</a>
<p>Register on our platform:</p>
<a href="http://agingkills.eu:8081/index.html#" target=”_blank”><div class="login">Login/Sign in</div></a>
<p class="details">Use our demo account:</p>
<p class="details"><b>login:</b> <i>[email protected]</i></p>
<p class="details"><b>password: </b><i>123456</i></p>
<!-- <div class="gitcoin gitcoin2">
<a class="gitcoin-a" href="https://explorer.gitcoin.co/#/round/42161/39/20" target=”_blank” >Support us on <span style="text-decoration: underline;">GitCoin!</span></a>
</div> -->
</div>
<!-- "Hamburger menu" / "Bar icon" to toggle the navigation links -->
<a href="javascript:void(0);" class="icon1" onclick="myFunction()">
<i class="fa fa-bars"></i>
</a>
</div>
<div class="sidenav">
<!-- <div class="gitcoin">
<a class="gitcoin-a" href="https://explorer.gitcoin.co/#/round/42161/39/20" target=”_blank” >Support us on <span style="text-decoration: underline;">GitCoin!</span></a>
</div> -->
<a class="main-links" href="./index.html#just-dna-seq" class="header-element">Just-DNA-Seq:</a>
<ul>
<li><a href="./index.html#tutorial">Tutorial</a></li>
<li><a href="./index.html#report">Report example</a></li>
<li><a href="./index.html#modules">Modules</a></li>
<li><a href="./index.html#team" class="header-element">About team</a></li>
</ul>
<a class="main-links" href="./how_it_works.html" class="header-element">How it works</a>
<a class="main-links" href="./why_just_dna.html" class="header-element">Why Just-DNA-Seq?</a>
<a class="main-links" href="https://arxiv.org/abs/2403.19087" target=”_blank” class="header-element">Our paper</a>
<a class="main-links" href="https://github.com/dna-seq" target=”_blank” class="header-element">Github</a>
<a class="main-links" href="https://just-dna-seq.readthedocs.io/en/oakvar/" target=”_blank” class="header-element">Documentation</a>
<a class="main-links" href="https://longevity-genie.github.io/" target=”_blank” class="header-element">Longevity-Genie project</a>
<p>Register on our platform:</p>
<a href="http://agingkills.eu:8081/index.html#" target=”_blank”><div class="login">Login/Sign in</div></a>
<p class="details">Use our demo account:</p>
<p class="details"><b>login:</b> <i>[email protected]</i></p>
<p class="details"><b>password: </b><i>123456</i></p>
</div>
<div class="main">
<div id="toTop">
<section class="line arrow">
</section>
<section class="bodypart arrow">
</section>
</div>
<div class="container">
<div class="not">
<h2 id="how" class="how">How it works</h2>
<section class="white white-how">
<p>The Just DNA-Seq platform consists of OakVar (Open-source Genomic Variant Analysis Platform) modules, bioinformatics pipelines, and additional libraries. One can realign and annotate the genome of interest employing Just DNA-Seq tools to retrieve information about variants associated with age-related diseases or major life threatening risks and longevity-associated variants present in genome.</p>
</section>
</div>
<div class="not intro">
<section class="white white-intro">
<p>Just DNA-Seq is a set of open-source libraries and pipelines designed to help you with:</p>
<ul class="outer">
<li>realigning your raw genome reads and doing variant calling using the latest tools and <a href="https://github.com/dna-seq/dna-seq">Bioinformatic pipelines</a></li>
<li>annotating your own genome using <a href="https://github.com/dna-seq/oakvar-longevity">longevity OakVar plugin</a> with:
<ul>
<li>known longevity, cancer risks</li>
<li>known drug interactions</li>
<li>cardio hereditary diseases risks</li>
<li>coronary artery disease risks variations</li>
</ul>
</li>
<li>getting a comprehensive and transparent open-source report, inclusive of all previously mentioned information as well as polygenic health risk predictions and personal recommendations related to longevity.</li>
</ul>
</section>
</div>
</div>
<footer>
<div class="footer-container">
<a href="https://github.com/dna-seq/" class="link1" target="_blank" rel="noopener noreferrer"><li>Our Github </li></a>
<a href="https://gitcoin.co/grants/4048/just-dna-seq" class="link2" target="_blank" rel="noopener noreferrer"><li>Our Gitcoin </li></a>
<a href="https://twitter.com/just_dna_seq" class="link3" target="_blank" rel="noopener noreferrer"><li>Our Twitter </li></a>
<a href="https://www.youtube.com/channel/UCKJPXRJgi4Rxh9Lb1G_9SZw" class="link4" target="_blank" rel="noopener noreferrer"><li>Our YouTube </li></a>
<a href="https://discord.com/invite/5WU6aSANXy" class="link5" target="_blank" rel="noopener noreferrer"><li> Our Discord</li></a>
</div>
</footer>
</div>
</body>