From f46ca20fa99c7e4bc6f11abbf1e420235faf3de0 Mon Sep 17 00:00:00 2001
From: Paul Jonas Jost <70631928+PaulJonasJost@users.noreply.github.com>
Date: Mon, 5 Feb 2024 18:22:19 +0100
Subject: [PATCH] Remove flake8-black (#1303)

* Remove flake8-black due to no updates and running black separately already.

* Solved B038 error on flake8

* Added to CHANGELOG.rst

* Updated Changelog
---
 CHANGELOG.rst                 | 3 ++-
 pypesto/visualize/profiles.py | 8 ++++----
 tox.ini                       | 1 -
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index cefa08edd..db393cf34 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -10,7 +10,7 @@ Release notes
 -------------------
 
 * General
-    * Stabilize tests (#1240, #1254, #1300, #1302)
+    * Stabilize tests (#1240, #1254, #1300, #1302, #1303)
     * Update type annotations and documentations (#1239, #1248, #1255, #1258, #1251, #1268, #1275)
     * GHA/Codeowner changes (#1260, #1261, #1259, #1262, #1285)
     * Update utility functions (#1243)
@@ -25,6 +25,7 @@ Release notes
 * Select
     * Allow for hierarchical problems (#1241)
     * custom minimize method (#1264)
+    * Set estimated parameters in petab_select.Models (#1287)
 * Hierarchical
     * Log space startpoint sampling (#1242)
     * Support for box constraints on offset and scaling parameters (#1238)
diff --git a/pypesto/visualize/profiles.py b/pypesto/visualize/profiles.py
index f2077ceef..8069f38e9 100644
--- a/pypesto/visualize/profiles.py
+++ b/pypesto/visualize/profiles.py
@@ -493,15 +493,15 @@ def process_profile_indices(
 
     # get the profiles, which should be plotted and sanitize, if not plottable
     if profile_indices is None:
-        profile_indices = list(plottable_indices)
+        profile_indices_ret = list(plottable_indices)
     else:
+        profile_indices_ret = list(profile_indices)
         for ind in profile_indices:
             if ind not in plottable_indices:
-                profile_indices = list(profile_indices)
-                profile_indices.remove(ind)
+                profile_indices_ret.remove(ind)
                 warn(
                     'Requested to plot profile for parameter index %i, '
                     'but profile has not been computed.' % ind
                 )
 
-    return profile_indices
+    return profile_indices_ret
diff --git a/tox.ini b/tox.ini
index c1fec3cab..ba32fe490 100644
--- a/tox.ini
+++ b/tox.ini
@@ -157,7 +157,6 @@ deps =
     flake8-colors >= 0.1.9
     flake8-comprehensions >= 3.10.0
     flake8-print >= 5.0.0
-    flake8-black >= 0.3.3
     flake8-isort >= 4.0.2
     flake8-docstrings >= 1.6.0
 commands =