index.json

{
    "00_preface.md": "Preface",
    "01_overview": [
        "1. Overview",
        {
            "01_challange.md": "1.1 Challenge in Connecting EEG MEG to Neural Circuits ",
            "02_using_hnn.md": "1.2 How HNN solve the Challenge by Bridging Scales",
            "03_sample_workflow.md": "1.3 Overview of the Simulation Workflow"
        }
    ],
    "02_background": [
        "2. Background",
        {
            "01_biophysical_modeling.md": "2.1 Challenge in Connecting EEG MEG to Neural Circuits ",
            "02_signal_origins.md": "2.2 The Origins of Source Localize MEG/EEG Primary Currents",
            "03_glossary.md": "2.3 Glossary of Terms"
        }
    ],
    "03_assumptions": [
        "3. Assumptions and Validation",
        {
            "01_template_model.md": "3.1 Template Model",
            "02_cortical_column_structure.md": "3.2 Cortical Column Structure",
            "03_primary_electric_currents.md": "3.3 Primary Electrical Currents",
            "04_neuron_morphology.md": "3.4 Neuron Morphology and Physiology",
            "05_synaptic_connectivity.md": "3.5 Synaptic Connectivity",
            "06_evoked_rhythmic_inputs.md": "3.6 Evoked and Rhythmic Driving Inputs",
            "07_tonic_noisy.md": "3.7 Tonic and Noisy Driving Inputs"
        }
    ],
    "04_using_hnn": [
        "4. Using HNN",
        {
            "01_installation.md": "4.1 Installation",
            "02_network_parameters.md": "4.2 Network Parameters",
            "03_drive_parameters.md": "4.3 Drive Parameters",
            "04_loading_data.md": "4.4 Loading Data",
            "05_running_simulations.md": "4.5 Running Simulations",
            "06_plotting_firing_patterns.md": "4.6 Plotting Firing Patterns",
            "07_recording_lfp.md": "4.7 Recording and Plotting LFP",
            "08_animating_simulations.md": "4.8 Animating Simulations",
            "09_more_visualizations.md": "4.9 Additional Visualizations",
            "10_parallelizing.md": "4.10 Running Parallel Simulations",
            "11_optimization.md": "4.11 Optimizing Evoked Responses and Rhythms",
            "12_batch_simulation.md": "4.12 Running Batch Simulations"
        }
    ],
    "05_erps": [
        "5. Simulating ERPs",
        {
            "01_overview_of_erps.md": "2.1 Review of ERPs"
        }
    ],
    "06_alpha_beta": [
        "6. Simulating Alpha/Beta Rhythms",
        {}
    ],
    "07_gamma": [
        "7. Simulating Gamma Rhythms",
        {}
    ],
    "08_data_to_simulation": [
        "8. From Data to Simulation",
        {}
    ],
    "09_feature_demos": [
        "9. Feature Demos",
        {}
    ]
}