diff --git a/README.md b/README.md index fa4b356..131381a 100644 --- a/README.md +++ b/README.md @@ -2,14 +2,14 @@ # ECNet: scalable, retrainable and deployable machine learning projects for fuel property prediction -[![GitHub version](https://badge.fury.io/gh/tjkessler%2FECNet.svg)](https://badge.fury.io/gh/tjkessler%2FECNet) +[![GitHub version](https://badge.fury.io/gh/ecrl%2FECNet.svg)](https://badge.fury.io/gh/ecrl%2FECNet) [![PyPI version](https://badge.fury.io/py/ecnet.svg)](https://badge.fury.io/py/ecnet) [![status](http://joss.theoj.org/papers/f556afbc97e18e1c1294d98e0f7ff99f/status.svg)](http://joss.theoj.org/papers/f556afbc97e18e1c1294d98e0f7ff99f) -[![GitHub license](https://img.shields.io/badge/license-MIT-blue.svg)](https://raw.githubusercontent.com/TJKessler/ECNet/master/LICENSE.txt) +[![GitHub license](https://img.shields.io/badge/license-MIT-blue.svg)](https://raw.githubusercontent.com/ECRL/ECNet/master/LICENSE.txt) [![Documentation Status](https://readthedocs.org/projects/ecnet/badge/?version=latest)](https://ecnet.readthedocs.io/en/latest/?badge=latest) [![Build Status](https://dev.azure.com/uml-ecrl/package-management/_apis/build/status/ECRL.ECNet?branchName=master)](https://dev.azure.com/uml-ecrl/package-management/_build/latest?definitionId=1&branchName=master) -**ECNet** is an open source Python package for creating scalable, retrainable and deployable machine learning projects with a focus on fuel property prediction. An ECNet __project__ is considered a collection of __pools__, where each pool contains a neural network that has been selected from a group of __candidate__ neural networks. Candidates are selected to represent pools based on their ability to optimize certain learning criteria (for example, performing optimially on unseen data). Each pool contributes a prediction derived from input data, and these predictions are averaged to calculate the project's final prediction. Using multiple pools allows a project to learn from a variety of learning and validation sets, which can reduce the project's prediction error. Projects can be saved and reused at a later time allowing additional training and deployable predictive models. +**ECNet** is an open source Python package for creating scalable, retrainable and deployable machine learning projects with a focus on fuel property prediction. An ECNet __project__ is considered a collection of __pools__, where each pool contains a neural network that has been selected from a group of __candidate__ neural networks. Candidates are selected to represent pools based on their ability to optimize certain learning criteria (for example, performing optimially on unseen data). Each pool contributes a prediction derived from input data, and these predictions are averaged to calculate the project's final prediction. Using multiple pools allows a project to learn from a variety of learning and validation sets, which can reduce the project's prediction error. Projects can be saved and reused at a later time allowing additional training and deployable predictive models. [T. Sennott et al.](https://doi.org/10.1115/ICEF2013-19185) have shown that neural networks can be applied to cetane number prediction with relatively little error. ECNet provides scientists an open source tool for predicting key fuel properties of potential next-generation biofuels, reducing the need for costly fuel synthesis and experimentation. @@ -17,7 +17,7 @@

-Using ECNet, [T. Kessler et al.](https://doi.org/10.1016/j.fuel.2017.06.015) have increased the generalizability of neural networks to predict the cetane number for a variety of molecular classes represented in our [cetane number database](https://github.com/TJKessler/ECNet/tree/master/databases), and have increased the accuracy of neural networks for predicting the cetane number of underrepresented molecular classes through targeted database expansion. +Using ECNet, [T. Kessler et al.](https://doi.org/10.1016/j.fuel.2017.06.015) have increased the generalizability of neural networks to predict the cetane number for a variety of molecular classes represented in our [cetane number database](https://github.com/ECRL/ECNet/tree/master/databases), and have increased the accuracy of neural networks for predicting the cetane number of underrepresented molecular classes through targeted database expansion. Future plans for ECNet include: - distributed candidate training for GPU's @@ -34,4 +34,4 @@ To contribute to ECNet, make a pull request. Contributions should include tests To report problems with the software or feature requests, file an issue. When reporting problems, include information such as error messages, your OS/environment and Python version. -For additional support/questions, contact Travis Kessler (travis.j.kessler@gmail.com), Hernan Gelaf-Romer (hernan_gelafromer@student.uml.edu) and/or John Hunter Mack (Hunter_Mack@uml.edu). +For additional support/questions, contact Travis Kessler (Travis_Kessler@student.uml.edu) and/or John Hunter Mack (Hunter_Mack@uml.edu). diff --git a/databases/ysi_database_v2.0.csv b/databases/ysi_database_v2.0.csv new file mode 100644 index 0000000..fe5a9ab --- /dev/null +++ b/databases/ysi_database_v2.0.csv @@ -0,0 +1,568 @@ 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+UMLYSI0118,L,methylcyclopentadiene dimer,CC1=CC2C3CC(C=C3C)C2C1,aromatic,C12H16,26472-00-4,n/a,UML,"2,5-Dimethyl-3a,4,7,7a-tetrahydro-1H-4,7-methanoindene",189.2,160.28,5.724285714,16.2144,27.0688,18.0912,31.3216,0.579085714,0.966742857,0.646114286,1.118628571,0.212121212,28,12,2,30,14,2,16,0,0,2,0,0,16,12,0,0,0,0,0,0,0,0,0,0,0,0,57.14285714,42.85714286,0,0,0,8,4,0,0,1,0,3,6,15,9,3,0.833333333,0.6,1.5,1,0.333333333,0,0,3,1,0,1,1,0,0,0,0,0,0,0,50.86746032,20.31468254,0,27.35595238,31.84166667,0,0,0,72,96,96,72,147.9,100.89537,90,115,115,90,181.42,122.127534,6,5.5,2.444444444,1.930555556,15,22,1.732050808,9.364262454,2,2.182247272,0.326785826,24,6,1.095212214,15,39.92749394,2.865679887,5.04396036,1,56,4.666666667,0.722222222,3.944444444,22,76,18,1.784159128,6,2.575757576,10,7.818181818,842,981,823,1094,11.48837398,125,2005,6.939271861,2.041538241,0.769135656,1.180565739,0.612202381,0.369022236,0.217957935,0.115229759,0.405138889,0.547453704,3.429166667,11.50008972,19.66666667,1.638888889,9.47471524,9.09023137,0.0547249,0.00140602,0.000971876,0.000348592,7.138888889,4.503609527,2.012098496,7.72E-06,0.005747693,0.002252721,0,5,0.729573959,2.708050201,4.290459441,5.198497031,6.142037406,7.072421901,8.017307508,8.954027759,9.897922094,10.83693034,11.78000934,3.36729583,0,4.762173935,3.433987204,6.343880434,5.860786223,8.026496939,8.002694162,9.771611931,2.708050201,3.135494216,3.496507561,3.891820298,4.043051268,4.094344562,4.043051268,3.850147602,3.258096538,1.609437912,2.833213344,3.36729583,3.784189634,4.276666119,4.532599493,4.744932128,4.890349128,4.912654886,4.418840608,2.708050201,12.27399761,5.926926026,6.606650186,1.114684097,0.67972416,3.256634863,2.607626977,8.29252874,5.754020195,5.776908128,5.034805569,4.686194486,3.564336147,0.691044062,0.411001443,0.262586733,0.157337674,0.097629052,0.06364886,7.878315178,5.110990332,4.875081908,4.131526387,3.646898872,2.612887827,0.656526265,0.365070738,0.221594632,0.1291102,0.07597706,0.046658711,8.29252874,5.754020195,5.776908128,5.034805569,4.686194486,3.564336147,34.52412117,2.436404985,81.10538611,5.110990332,5.754020195,4.037057091,4.875608856,134.6059378,27.58638781,0.985228136,2.254200348,5.874795113,3.022055209,3.559929884,148.7772229,998.7151692,1.459147917,3.502736172,12,1,43.01955001,2.306127543,1.462066091,14.7857466,0.40687982,0.560974582,1.363524187,0.985228136,2.448145765,3.726474118,4.039148672,4.324862958,4.324862958,27.58638781,68.54808141,104.3412753,113.0961628,121.0961628,121.0961628,0.204941834,0.509250056,0.775161014,0.840201886,0.899634628,0.899634628,3.822126786,2.359209158,1.080880804,0.76820625,0.482491964,0.482491964,0.197045627,0.489629153,0.745294824,0.807829734,0.864972592,0.864972592,20.13907068,7.904951107,0.658745926,1.077479026,2.563947676,0.213662306,4.81114526,15.80990221,1.317491851,6.135564891,3.497460064,2.918288281,0.24319069,0.558153829,0.127969956,0.010664163,-1.071470377,13.4750957,1.122924641,1.35543823,170,2.575757576,28.33333333,33.41666667,0.531458766,0.03796134,1.860105682,5.877735782,29.23358554,2.436132128,1.759058503,29.23358554,2.436132128,42.39094894,58.46717108,4.872264257,13.67796082,29.23358554,6.989335266,10.01917951,13.54313081,16.85764448,20.26024054,3.116114728,0.259676227,0.592336127,0.062323765,0.005193647,-1.446415583,13.59672208,1.133060174,1.360121065,107.49,14.39222083,1.203586906,4.605170186,28,2.333333333,1.736589638,5.083250939,0.423604245,4.806300989,17.61263494,1.467719578,12.64898446,6.07260843,4.615120517,6.023447593,7.502738211,9.016634256,10.54998852,3.464101615,0.288675135,0.647508748,3.464101615,0.288675135,0.647508748,13.45076492,1.120897077,1.354496379,0.959003366,35.06001956,13.96542847,0.997530605,48.87899964,1.629090003,3.383114068,0.281926172,0.635179969,1,0.083333333,1.874967772,6.766228136,0.563852345,2.044235393,2.746435327,1.773067336,0,1.454875625,0.220671362,1.257064891,3.151439665,0.262619972,0.598210796,0.33483605,0.027903004,-0.570201348,13.49392576,1.124493814,1.35616598,21.95694444,0.332680976,3.659490741,3.675308501,0.262522036,12.86357975,2.984698057,7.655441343,0.637953445,1.06076428,3.86189739,0.321824783,5.673078224,15.31088269,1.27590689,5.862169875,4.16043198,3.472221888,3.894460571,5.588328165,6.731762271,8.146588693,2.902137219,0.241844768,0.555261531,0.079081606,0.006590134,-1.322309422,13.47351607,1.122793005,1.355377133,516,7.818181818,86,10.16865079,0.165938137,0.011852724,0.58078348,7.76937861,86.3358262,7.194652183,2.323429259,86.3358262,7.194652183,104.5132983,172.6716524,14.38930437,25.89484865,86.3358262,9.03990786,13.35434298,17.83639789,22.29060219,26.74958554,2.523760672,0.210313389,0.482457802,0.061671074,0.005139256,-1.451902188,13.72000927,1.143334106,1.364825286,22.73174603,0.344420394,3.788624339,247.5,3.945809277,0.28184352,13.81033247,2.85098018,4.593348509,0.382779042,0.794555277,3.954016713,0.329501393,5.032354354,9.186697018,0.765558085,3.891150412,4.123346924,3.03280882,4.079657969,5.518234091,6.870789381,8.249661734,2.962305109,0.246858759,0.565955745,0.20934643,0.0174455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+UMLYSI0127,L,"1,2,3,4,4a,5,6,7,8,8a-decahydronaphthalene",C1CCC2CCCCC2C1,aromatic,C10H18,91-17-8,7044,UML,"stereochemistry not specifiied (see below) + + + +cis: C1C[C@H]2CCCC[C@H]2CC1 + + + +trans: 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alkanone,C9H18O,815-24-7,13152,PubChem,,65.8,142.27,5.081071429,14.456,27.2797,16.3071,31.9462,0.516285714,0.974275,0.582396429,1.140935714,0.2,28,10,7,27,9,1,10,2,0.074074074,1,0,0,18,9,0,1,0,0,0,0,0,0,0,0,1,0,64.28571429,32.14285714,0,3.571428571,0,8,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48,90,101.7355372,50.1037111,126.06,101.5036163,51,80,83.63636364,53.99000833,124.8,92.5890368,7.833333333,6.916666667,2,1.666666667,7,15,3.872983346,3.871201011,1.276595745,1.472733358,0.508249709,21,5,1.234708048,12,30.82322605,2.670830083,7.654493014,1,35,3.5,0.6,3.52,15,72,10,1.295461844,4,2.466666667,4,2.466666667,405,564,273,484,9.555341511,57,111,9.675324675,2.373033188,2.884881456,2.295986656,0.65,0.295238095,0.085714286,0,1.446180556,4.486111111,8.972222222,33.01810606,23.16666667,2.316666667,7.184056211,5.47314386,0.028856616,0.006897229,-0.02221154,0.003392634,7.816666667,3.722515789,1.414509605,4.56969E-05,0.019518469,-0.045359878,9.06E-06,54,1.156779649,2.302585093,3.891820298,4.634728988,5.556828062,6.326149473,7.247792582,8.02059915,8.942591637,9.715892113,10.63799258,2.944438979,0,4.369447852,0,5.937536205,0,7.563719668,0,9.220191688,2.302585093,2.772588722,2.564949357,2.302585093,0,0,0,0,0,0,2.397895273,2.890371758,2.944438979,2.302585093,0,0,0,0,0,0,11.17532459,4.025351691,4.17438727,1.037024238,0.149035579,2.937832606,2.443680008,8.577350269,4.154700538,5.453738644,2.598076211,1.299038106,0,0.857735027,0.461633393,0.363582576,0.216506351,0.144337567,0,7.90824829,3.704124145,4.829124145,1.362372436,1.125,0,0.790824829,0.411569349,0.32194161,0.113531036,0.125,0,8.577350269,4.154700538,5.453738644,2.598076211,1.299038106,0,25.5055535,1.775162974,45.98505863,3.690221478,4.095627583,2.906141204,3.224729682,134.6059378,31.01796278,1.107784385,1.96559623,5.361455055,1.570950594,3.298030961,88.45183037,595.1215111,1.156779649,3.016875696,4,0.4,15.70950594,1.958499469,1.402025991,26.55266679,1.039577419,1.386472124,3.681549487,1.107784385,1.501339742,1.501339742,1.501339742,1.329648495,0.886003325,31.01796278,42.03751279,42.03751279,42.03751279,37.23015787,24.8080931,0.230435323,0.312300582,0.312300582,0.312300582,0.276586297,0.184301625,3.699570537,3.30601518,3.30601518,3.30601518,3.477706427,3.921351597,0.230435323,0.312300582,0.312300582,0.312300582,0.276586297,0.184301625,37.39230485,4.80842881,0.480842881,0.682003191,2.334414218,0.233441422,4.668828437,9.61685762,0.961685762,3.713572067,3.170763419,2.891951981,0.289195198,0.461191077,0.557537762,0.055753776,-0.253725712,8.475616112,0.847561611,0.928171278,111,2.466666667,22.2,22.75,0.470125798,0.0522362,4.231132186,5.379897354,22.84770066,2.284770066,1.3588425,22.84770066,2.284770066,32.43027636,45.69540133,4.569540133,12.76546841,22.84770066,6.466144724,9.303921786,12.54649066,15.63111366,18.77854053,2.815656588,0.281565659,0.449579685,0,0,0,8.697235167,0.869723517,0.939381213,111,-10.1581629,1.916515139,0,18,1.8,1.255272505,5.528917957,0.552891796,5.320205805,15.50551323,1.550551323,8.432288684,6.004665238,4.204692619,5.726847748,7.333676396,8.971956271,10.62582939,3.16227766,0.316227766,0.5,3.16227766,0.316227766,0.5,8.581163303,0.85811633,0.933546167,0.830940108,20.66025404,8.960938896,0.995659877,80.64845006,1.405447334,2.366025404,0.23660254,0.374019403,1,0.1,2,4.732050808,0.473205081,1.681758574,2.575621127,1.609437912,0,1.446918983,0,1.354545663,3.000973155,0.300097315,0.47726211,0.643950551,0.064395055,-0.191147481,8.47871515,0.847871515,0.928330045,14.64583333,0.325462963,2.929166667,2.606174118,0.289574902,23.45556706,2.594009071,5.257194925,0.525719492,0.72075408,3.280925887,0.328092589,5.129189492,10.51438985,1.051438985,4.311832836,3.63502264,3.055961937,3.394010157,4.950141615,5.888801823,7.184028701,2.794741249,0.279474125,0.446341605,0.374073442,0.037407344,-0.427043124,8.482703211,0.848270321,0.928534272,111,2.466666667,22.2,22.75,0.470125798,0.0522362,4.231132186,5.379897354,22.84770066,2.284770066,1.3588425,22.84770066,2.284770066,32.43027636,45.69540133,4.569540133,12.76546841,22.84770066,6.466144724,9.303921786,12.54649066,15.63111366,18.77854053,2.815656588,0.281565659,0.449579685,0,0,0,8.697235167,0.869723517,0.939381213,45,1,9,45,1,0.111111111,9,3.828641396,9,0.9,0.954242509,9,0.9,10,18,1.8,8.318498321,9.000531868,4.510859507,6.580639137,8.790421307,10.9859874,13.18336628,0,0,0,0,0,0,0,0,0,105.625,1.920454545,21.1,25.64752791,0.49350496,0.054833884,4.441544644,5.306913129,43.38258141,21.8162907,2.18162907,1.338780912,21.8162907,2.18162907,31.3988664,43.58258141,4.358258141,12.15267162,21.81629071,0.223143551,6.384509088,9.154096935,12.36766863,15.396746,18.50310326,2.815656588,0.281565659,0.449579685,0,0,0,8.697235167,0.869723517,0.939381213,105.6271,1.920492727,21.10048,25.64415992,0.493493409,0.054832601,4.441440682,5.306943433,43.38401534,21.81670767,2.181670767,1.338789212,21.81670767,2.181670767,31.39928336,43.58353534,4.358353534,12.15327559,21.81670767,0.222663436,6.384543769,9.154159109,12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alkanone,C9H18O,821-55-6,13187,PubChem,,45.1,142.27,5.081071429,14.456,27.2797,16.3071,31.9462,0.516285714,0.974275,0.582396429,1.140935714,0.2,28,10,3,27,9,1,10,6,0.222222222,1,0,0,18,9,0,1,0,0,0,0,0,0,0,0,1,0,64.28571429,32.14285714,0,3.571428571,0,8,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36,78,89.73553719,38.1037111,103.46,85.509344,34,58,61.63636364,35.32889259,82.76,62.91136,6.333333333,5.416666667,2.583333333,2.166666667,1,9,3,5.257495372,1.578947368,1.691726385,0.436124566,21,1,1.421594772,7,34.31757639,4.07703596,5.939658627,1,64,6.4,1.2,5.92,24,76,20,2.246439345,8,3.511111111,8,3.511111111,576,820,461,852,10.88209949,111,158,9.675324675,6.790594136,8.825130123,6.570120301,0.501666667,0.219209957,0.093805067,0.046160268,1.336575491,3.476438571,7.35163407,22.33791838,21.66666667,2.166666667,7.46575419,5.383631714,0.042459057,0.006130567,-0.022182193,0.003418219,7.666666667,3.722939441,1.309435081,4.71537E-05,0.019457175,-0.046452233,6.85E-06,22,2.246439345,2.302585093,3.610917913,4.234106505,4.919980926,5.564520407,6.255750042,6.908754779,7.601402335,8.258163362,8.951180966,2.944438979,0,4.007333185,0,5.198497031,0,6.447305863,0,7.727094485,2.302585093,2.302585093,2.079441542,1.945910149,1.791759469,1.609437912,1.386294361,1.098612289,0,0,2.397895273,2.48490665,2.197224577,2.079441542,1.945910149,1.791759469,1.609437912,1.386294361,0,0,9.655923227,4.025351691,4.17438727,1.037024238,0.149035579,2.97872113,2.426530506,7.819990956,4.77005561,3.596735547,1.885027805,1.156139248,0.692513903,0.781999096,0.530006179,0.399637283,0.269289686,0.192689875,0.138502781,7.150888978,4.264784317,2.866228665,1.632392159,0.97749887,0.566196079,0.715088898,0.473864924,0.318469852,0.23319888,0.162916478,0.113239216,7.819990956,4.77005561,3.596735547,1.885027805,1.156139248,0.692513903,29.19768393,2.219823261,36.85517875,4.250881649,4.690097211,3.518417025,4.056418566,134.6059378,31.01796278,1.107784385,2.856643375,5.238426519,2.521928095,3.290839978,128.5489519,827.6713899,1.295461844,3.239097918,10,1,33.21928095,2.771732595,1.37310439,27.5152295,0.586040345,0.940536678,1.48881419,1.107784385,1.712058833,3.040071227,3.69951385,4.039148672,4.039148672,31.01796278,47.93764732,85.12199436,103.5863878,113.0961628,113.0961628,0.230435323,0.356133229,0.632379193,0.769552885,0.840201886,0.840201886,3.699570537,3.095296089,1.767283695,1.107841072,0.76820625,0.76820625,0.230435323,0.356133229,0.632379193,0.769552885,0.840201886,0.840201886,42.93050049,5.67128182,0.567128182,0.753681229,1.969615506,0.196961551,3.939231012,11.34256364,1.134256364,4.343805422,3.114238058,2.929791425,0.292979142,0.466836704,0.256323536,0.025632354,-0.591211514,8.553825136,0.855382514,0.932160368,158,3.511111111,31.6,19.67857143,0.308132095,0.034236899,2.773188856,6.118097198,32.77768137,3.277768137,1.515578229,32.77768137,3.277768137,52.23678852,65.55536274,6.555536274,13.2666611,32.77768137,7.311218384,10.22734484,14.07689049,17.37196889,20.98136027,2.878126441,0.287812644,0.459109869,0.062731007,0.006273101,-1.202517742,8.650312188,0.865031219,0.937031781,158,-14.45936702,3.888024175,0,18,1.8,1.255272505,4.235660391,0.423566039,4.132780372,13.0706908,1.30706908,8.762333041,5.109111885,4.007333185,5.231108617,6.52649486,7.85902698,9.214232787,3.16227766,0.316227766,0.5,3.16227766,0.316227766,0.5,8.581163303,0.85811633,0.933546167,0.954011122,17.32780492,8.986598879,0.998510987,80.87938991,1.542591551,3.078049832,0.307804983,0.488275647,1,0.1,2,6.156099665,0.615609966,2.046347853,2.621963198,1.819158443,0,1.644912301,0,1.542922129,3.115355072,0.311535507,0.493507552,0.298858491,0.029885849,-0.524534401,8.554710571,0.855471057,0.932205321,12.80636338,0.284585853,2.561272676,3.373575501,0.374841722,30.36217951,2.505180768,5.867786968,0.586778697,0.768474338,2.707556429,0.270755643,4.341933877,11.73557394,1.173557394,4.715434921,3.371717481,3.014081044,2.887100403,4.420977319,4.990567602,6.158555507,2.876309257,0.287630926,0.458835579,0.183857134,0.018385713,-0.735519514,8.556822595,0.855682259,0.932312528,158,3.511111111,31.6,19.67857143,0.308132095,0.034236899,2.773188856,6.118097198,32.77768137,3.277768137,1.515578229,32.77768137,3.277768137,52.23678852,65.55536274,6.555536274,13.2666611,32.77768137,7.311218384,10.22734484,14.07689049,17.37196889,20.98136027,2.878126441,0.287812644,0.459109869,0.062731007,0.006273101,-1.202517742,8.650312188,0.865031219,0.937031781,45,1,9,45,1,0.111111111,9,3.828641396,9,0.9,0.954242509,9,0.9,10,18,1.8,8.318498321,9.000531868,4.510859507,6.580639137,8.790421307,10.9859874,13.18336628,0,0,0,0,0,0,0,0,0,152.625,2.775,30.5,22.25634924,0.317189256,0.035243251,2.854703304,6.062276076,62.93280857,31.59140428,3.159140428,1.499568931,31.59140428,3.159140428,50.87529316,63.13280857,6.313280857,12.66599324,31.59140428,0.223143551,7.250702046,10.09341665,13.9423487,17.17570037,20.76777347,2.876715673,0.287671567,0.458896939,0.105803197,0.01058032,-0.97550121,8.648093523,0.864809352,0.93692037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+UMLYSI0223,L,3-methylbutyl acetate,CC(C)CCOC(=O)C,saturated 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+UMLYSI0255,L,ethyl 3-methylbut-2-enoate,CCOC(=O)C=C(C)C,unsaturated 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+UMLYSI0260,L,methyl (E)-pent-3-enoate,C/C=C/CC(=O)OC,unsaturated 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+UMLYSI0275,L,propyl 2-methylprop-2-enoate,CCCOC(=O)C(=C)C,unsaturated 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+UMLYSI0283,L,butyl acetate,CCCCOC(=O)C,saturated 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alkanes,C7H16,142-82-5,8900,PubChem,,36,100.23,4.357826087,11.2144,22.0688,13.0912,26.3216,0.487582609,0.959513043,0.569182609,1.144417391,0.285714286,23,7,2,22,6,0,6,4,0.181818182,0,0,0,16,7,0,0,0,0,0,0,0,0,0,0,0,0,69.56521739,30.43478261,0,0,0,7,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,22,22,22,30.74,23.5256,20,20,20,20,28.08,21.4128,4.5,4.5,2,2,0,5,2.236067977,3.465735903,1.555555556,1.640670712,0.537158271,14,0,1.707106781,4,19.24902768,3.055050463,3.627465013,1,33,4.714285714,0.897959184,2.857142857,12,28,9,1.950212065,6,2.666666667,6,2.666666667,202,202,146,146,7.297142506,54,56,7,6,6,6,0.452380952,0.219387755,0.096598639,0.042857143,0.138888889,0.245694444,0.982777778,7.634054137,11.5,1.642857143,5.496696467,3.821367205,0.166737152,-0.026921964,0.10782785,0.031746032,7.142857143,2.621867655,0.853070277,0.001031181,-0.107445869,0.247945507,0.000358258,13,1.950212065,1.945910149,3.135494216,3.713572067,4.317488114,4.919980926,5.533389489,6.142037406,6.758094504,7.368339686,7.985143931,2.564949357,0,3.496507561,0,4.574710979,0,5.720311777,0,6.900730664,1.945910149,1.791759469,1.609437912,1.386294361,1.098612289,0.693147181,0,0,0,0,1.945910149,1.791759469,1.609437912,1.386294361,1.098612289,0.693147181,0,0,0,0,8.761236807,3.36729583,3.36729583,1,0,2.627114062,2.132338507,5.535533906,3.414213562,2.060660172,1.207106781,0.676776695,0.353553391,0.790790558,0.569035594,0.412132034,0.301776695,0.225592232,0.176776695,5.535533906,3.414213562,2.060660172,1.207106781,0.676776695,0.353553391,0.790790558,0.569035594,0.412132034,0.301776695,0.225592232,0.176776695,5.535533906,3.414213562,2.060660172,1.207106781,0.676776695,0.353553391,20.48528137,1.840004522,19.78207923,3.414213562,3.414213562,2.888448395,3.250213275,104.041925,20.39044053,0.886540893,2.398302995,4.168986958,1.950212065,2.774244972,50.3643629,233.4632697,0.863120569,2.751629167,4,0.571428571,13.65148445,2.440007983,1.22222776,15.01828953,0.666081376,1.019498601,1.729713704,0.886540893,1.149229762,2.024260067,2.566190217,2.805745652,2.609069045,20.39044053,26.43228451,46.55798153,59.02237498,64.53214998,60.00858803,0.195982923,0.254054166,0.447492504,0.567294146,0.620251403,0.576773143,3.637021063,3.374332195,2.499301889,1.95737174,1.717816305,1.914492911,0.19880132,0.257707677,0.453927819,0.575452308,0.629171135,0.58506762,20.48528137,4.027339492,0.575334213,0.423512769,1.847759065,0.263965581,3.69551813,8.054678984,1.150668426,3.091042453,2.73919265,2.513669746,0.359095678,0.280215753,0.099456184,0.014208026,-0.701657747,5.592530245,0.798932892,0.523325839,56,2.666666667,16,11.15,0.407912148,0.067985358,2.447472888,4.844187086,16.6253823,2.375054615,0.854540149,16.6253823,2.375054615,26.72321698,33.2507646,4.750109229,8.945071894,16.62538247,5.973809612,8.168769824,11.3726629,13.96806081,16.91462223,2.341896018,0.334556574,0.258697326,0,0,0,5.721964274,0.817423468,0.530281599,56,-7.498040439,2.885095623,0,12,1.714285714,0.755426872,3.801937736,0.543133962,3.603875472,8.702204129,1.243172018,5.934894196,4.522970604,3.555348061,4.691347882,5.894402834,7.133295955,8.394121194,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.975489589,10.82842712,5.985143843,0.997523974,35.91086306,1.310251729,2.366025404,0.338003629,0.261813582,1,0.142857143,2,4.732050808,0.676007258,1.681758574,2.316436311,1.609437912,0,1.446918983,0,1.354545663,2.618591722,0.374084532,0.292647453,0.169101979,0.024157426,-0.540295917,5.594918316,0.799274045,0.523455625,7.989722222,0.380462963,2.282777778,2.564019422,0.42733657,15.38411653,2.102137974,4.119483043,0.588497578,0.430389904,2.400399559,0.342914223,3.963351092,8.238966087,1.176995155,3.346584212,2.935808684,2.621413019,2.328341703,3.846629402,4.257734494,5.383121673,2.490590677,0.355798668,0.277411651,0.067967869,0.009709696,-0.817387444,5.593895954,0.799127993,0.523400069,56,2.666666667,16,11.15,0.407912148,0.067985358,2.447472888,4.844187086,16.6253823,2.375054615,0.854540149,16.6253823,2.375054615,26.72321698,33.2507646,4.750109229,8.945071894,16.62538247,5.973809612,8.168769824,11.3726629,13.96806081,16.91462223,2.341896018,0.334556574,0.258697326,0,0,0,5.721964274,0.817423468,0.530281599,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,56,2,16,11.15,0.407912148,0.067985358,2.447472888,4.844187086,33.2507646,16.6253823,2.375054615,0.854540149,16.6253823,2.375054615,26.72321698,33.2507646,4.750109229,8.945071894,16.62538247,0,5.973809612,8.168769824,11.3726629,13.96806081,16.91462223,2.341896018,0.334556574,0.258697326,0,0,0,5.721964274,0.817423468,0.530281599,56,2,16,11.15,0.407912148,0.067985358,2.447472888,4.844187086,33.2507646,16.6253823,2.375054615,0.854540149,16.6253823,2.375054615,26.72321698,33.2507646,4.750109229,8.945071894,16.62538247,0,5.973809612,8.168769824,11.3726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alkanone,C7H14O,12/6/7379,23847,PubChem,,35.9,114.21,5.191363636,11.4024,21.5125,12.7843,25.1158,0.518290909,0.977840909,0.581104545,1.141627273,0.25,22,8,4,21,7,1,8,3,0.142857143,1,0,0,14,7,0,1,0,0,0,0,0,0,0,0,1,0,63.63636364,31.81818182,0,4.545454545,0,6,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30,72,83.73553719,32.1037111,96.8,79.500112,30,56,59.63636364,31.99333888,82.36,60.785424,5.666666667,4.75,2.027777778,1.666666667,2,8,2.828427125,3.583518938,1.411764706,1.56508458,0.528256863,17,2,1.37492571,7,22.7132832,2.777460299,5.19712921,0.666666667,33,4.125,0.65625,3.125,12,44,12,1.561278124,5,2.5,5,2.5,254,382,175,342,7.977658423,54,70,7.675324675,3.649726375,3.379468568,3.501604363,0.541666667,0.287690781,0.09243112,0.031702899,1.284722222,3.742824074,7.541759259,16.34249339,19,2.375,5.772900051,4.064807754,0.058043817,0.022024823,-0.071642195,0.010203255,7.875,2.968550645,1.045989943,0.000328773,0.062656093,-0.143631753,0.000101807,24,1.5,2.079441542,3.433987204,4.110873864,4.844187086,5.556828062,6.289715571,7.01301579,7.744569809,8.471568013,9.202207389,2.708050201,0,3.850147602,0,5.176149733,0,6.577861358,0,8.011355109,2.079441542,2.197224577,2.079441542,1.609437912,1.098612289,0,0,0,0,0,2.197224577,2.397895273,2.397895273,1.791759469,1.098612289,0,0,0,0,0,9.859535665,3.610917913,3.784189634,1.047985505,0.173271721,2.740584594,2.250498705,6.568914101,3.680739213,3.009975955,1.882088123,0.788675135,0.333333333,0.821114263,0.525819888,0.376246994,0.268869732,0.197168784,0.166666667,5.899812122,3.20815999,2.371013381,1.140350191,0.535074775,0.288675135,0.737476515,0.45830857,0.296376673,0.16290717,0.133768694,0.144337567,6.568914101,3.680739213,3.009975955,1.882088123,0.788675135,0.333333333,22.66178554,1.788495438,27.7911812,3.194257322,3.613264398,2.618392545,2.97130605,98.10749561,25.15304225,1.143320102,2.189391747,4.636375967,2.25,2.967432933,61.30296891,324.5463177,1.5,2.842370993,7,0.875,22,2.222274414,1.299903619,18.39747893,0.849205499,1.189826589,2.609981172,1.143320102,1.820438145,2.889916845,3.265583323,3.265583323,2.860180448,25.15304225,40.0496392,63.5781706,71.8428331,71.8428331,62.92396987,0.256382472,0.408222011,0.648046005,0.732286893,0.732286893,0.641377802,3.316111517,2.638993473,1.569514773,1.193848296,1.193848296,1.59925117,0.256382472,0.408222011,0.648046005,0.732286893,0.732286893,0.641377802,25.76517449,4.323526474,0.540440809,0.508670498,2.074313293,0.259289162,4.148626586,8.647052947,1.080881618,3.33220451,2.900309802,2.591794958,0.32397437,0.330880513,0.01080009,0.001350011,-1.573258115,6.543951602,0.81799395,0.652672063,70,2.5,17.5,14.73333333,0.452974194,0.064710599,3.170819357,4.9698133,18.18147764,2.272684705,1.007703341,18.18147764,2.272684705,27.13286733,36.36295528,4.54536941,10.21880911,18.18147768,6.070737728,8.562740006,11.66038812,14.47232617,17.41662318,2.509642727,0.313705341,0.31968952,0.105383517,0.01317294,-0.78178185,6.710512208,0.838814026,0.661404537,70,-8.118872577,2.22928515,0,14,1.75,0.916902429,4.641186476,0.58014831,4.416899332,11.05828432,1.38228554,6.767343125,5.082415225,3.80666249,5.105945474,6.49375384,7.928406026,9.392411898,2.828427125,0.353553391,0.361235995,2.828427125,0.353553391,0.361235995,6.599663291,0.824957911,0.655617423,0.920184803,14.05985573,6.968636025,0.995519432,48.78045218,1.34917864,2.403775915,0.300471989,0.304715183,1,0.125,2,4.80755183,0.600943979,1.704748092,2.412878418,1.620487749,0,1.440727013,0,1.33525598,2.750794013,0.343849252,0.351566456,0,0,0,6.548508152,0.818563519,0.652913898,10.10777778,0.360992063,2.526944444,2.558547764,0.365506823,17.90983435,2.288132279,4.527647899,0.565955987,0.524698117,2.764294688,0.345536836,4.46836837,9.055295797,1.131911975,3.632325892,3.19574249,2.785658533,2.782160718,4.309309027,4.987884204,6.177956811,2.532022741,0.316502843,0.322774082,0.009052933,0.001131617,-1.634568565,6.547999583,0.818499948,0.652886914,70,2.5,17.5,14.73333333,0.452974194,0.064710599,3.170819357,4.9698133,18.18147764,2.272684705,1.007703341,18.18147764,2.272684705,27.13286733,36.36295528,4.54536941,10.21880911,18.18147768,6.070737728,8.562740006,11.66038812,14.47232617,17.41662318,2.509642727,0.313705341,0.31968952,0.105383517,0.01317294,-0.78178185,6.710512208,0.838814026,0.661404537,28,1,7,28,1,0.142857143,7,3.36729583,7,0.875,0.676078432,7,0.875,8,14,1.75,6.647688374,7.003254818,4.043051268,5.82008293,7.786967003,9.729193687,11.67552889,0,0,0,0,0,0,0,0,0,65.875,1.829861111,16.4375,17.41399965,0.481204286,0.068743469,3.368429999,4.883452752,34.10792431,17.17896215,2.147370269,0.987997538,17.17896215,2.147370269,26.13095327,34.29542431,4.286928038,9.5948276,17.17896227,0.223143551,5.97516048,8.367896208,11.44739496,14.1789405,17.08199232,2.507670756,0.313458844,0.319416412,0.120565753,0.015070719,-0.735020829,6.709674881,0.83870936,0.661361181,65.8765,1.829902778,16.43795,17.41076486,0.481190573,0.06874151,3.368334013,4.883488244,34.10932449,17.17936224,2.14742028,0.98800563,17.1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compounds,C7H14O3,623-96-1,69344,PubChem,,34.5,146.21,6.092083333,12.832,24.1671,13.6933,27.5346,0.534666667,1.0069625,0.570554167,1.147275,0.2,24,10,3,23,9,1,10,6,0.260869565,1,0,0,14,7,0,3,0,0,0,0,0,0,0,0,3,0,58.33333333,29.16666667,0,12.5,0,6,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36,142,177.2066116,45.85189625,190.86,152.697056,35,108,122.5454545,42.64113239,169.04,117.44096,6.333333333,4.75,2.666666667,1.791666667,1,9,3,5.257495372,1.578947368,1.691726385,0.436124566,23,1,1.201312089,8,33.69463969,3.797660098,5.83121472,1,61,6.1,1.12,5.76,21,88,20,2.246439345,8,3.311111111,8,3.311111111,541,964,425,1124,10.69962648,105,149,9.597402597,6.713716797,6.597402597,6.443424302,0.493333333,0.24982906,0.11663438,0.066096256,2.218796296,3.516388889,11.56111111,16.55246251,25.66666667,2.566666667,6.901805996,4.481754126,0.018417917,0.007783947,-0.026104624,0.001252288,8.066666667,3.675880803,1.26968644,3.95692E-05,0.019799689,-0.04743374,5.33E-06,22,2.246439345,2.302585093,3.610917913,4.262679877,4.96284463,5.645446898,6.354370041,7.048386409,7.760040681,8.458504195,9.171079658,2.944438979,0,4.007333185,0,5.231108617,0,6.532334292,0,7.878155337,2.302585093,2.302585093,2.197224577,2.079441542,1.945910149,1.386294361,1.098612289,0.693147181,0,0,2.397895273,2.48490665,2.397895273,2.302585093,2.197224577,1.386294361,1.098612289,0.693147181,0,0,9.849348106,4.025351691,4.17438727,1.037024238,0.149035579,2.978202856,2.429006717,7.819990956,4.808060412,3.389628766,2.100953631,1.249509283,0.90104757,0.781999096,0.534228935,0.376625418,0.262619204,0.178501326,0.150174595,6.553171996,3.603936267,1.946923425,0.848074696,0.412457479,0.225592232,0.6553172,0.400437363,0.216324825,0.106009337,0.058922497,0.037598705,7.819990956,4.808060412,3.389628766,2.100953631,1.249509283,0.90104757,31.24220933,2.182440934,37.76575545,3.522905582,4.473904056,2.944598175,3.395664559,110.0391,32.32975915,1.347073298,2.75907983,5.262596461,2.521928095,3.285553869,124.1585923,784.1268728,1.295461844,3.239097918,6,0.6,25.21928095,2.71928147,1.380538476,27.23909308,0.651882599,1.007443326,1.751451784,1.347073298,2.03067213,2.938721876,2.938721876,2.938721876,2.938721876,32.32975915,48.73613111,70.52932501,70.52932501,70.52932501,70.52932501,0.293802468,0.442898307,0.640947854,0.640947854,0.640947854,0.640947854,3.237889203,2.554290371,1.646240625,1.646240625,1.646240625,1.646240625,0.293802468,0.442898307,0.640947854,0.640947854,0.640947854,0.640947854,43.27254371,5.959003237,0.595900324,0.775173621,2.028523488,0.202852349,4.057046976,11.91800647,1.191800647,4.394449155,3.114674477,2.847079481,0.284707948,0.454399591,0.153454161,0.015345416,-0.814021332,8.546548771,0.854654877,0.931790775,149,3.311111111,29.8,20.02738095,0.333157677,0.03701752,2.998419094,5.991464547,31.09689182,3.109689182,1.492716983,31.09689182,3.109689182,47.67861055,62.19378363,6.219378363,13.2497693,31.09689182,7.169350017,10.13463896,13.8281059,17.14101845,20.64546363,2.673467888,0.267346789,0.427074972,0,0,0,8.673332129,0.867333213,0.938185977,149,-13.63573219,3.316343748,0,18,1.8,1.255272505,4.377202854,0.437720285,4.256588096,13.0609573,1.30609573,8.752265314,5.124278453,4.007333185,5.231108617,6.532334292,7.878155337,9.253495642,3.16227766,0.316227766,0.5,3.16227766,0.316227766,0.5,8.581163303,0.85811633,0.933546167,0.961612082,17.45945742,8.976015514,0.997335057,80.78413962,1.555480766,3.34334402,0.334334402,0.524181067,1,0.1,2,6.686688041,0.668668804,2.11147503,2.628125014,1.84582669,0,1.652923024,0,1.542427202,3.115355072,0.311535507,0.493507552,0.022716116,0.002271612,-1.643665926,8.552012809,0.855201281,0.932068343,12.95616355,0.287914746,2.59123271,3.357786759,0.373087418,30.22008083,2.511944667,5.81397518,0.581397518,0.764473173,2.79540204,0.279540204,4.466562422,11.62795036,1.162795036,4.696674299,3.390199122,3.015691861,2.913559541,4.462165709,5.097299558,6.286414413,2.78979442,0.278979442,0.445572201,0.112063525,0.011206352,-0.950535722,8.549836308,0.854983631,0.9319578,149,3.311111111,29.8,20.02738095,0.333157677,0.03701752,2.998419094,5.991464547,31.09689182,3.109689182,1.492716983,31.09689182,3.109689182,47.67861055,62.19378363,6.219378363,13.2497693,31.09689182,7.169350017,10.13463896,13.8281059,17.14101845,20.64546363,2.673467888,0.267346789,0.427074972,0,0,0,8.673332129,0.867333213,0.938185977,45,1,9,45,1,0.111111111,9,3.828641396,9,0.9,0.954242509,9,0.9,10,18,1.8,8.318498321,9.000531868,4.510859507,6.580639137,8.790421307,10.9859874,13.18336628,0,0,0,0,0,0,0,0,0,121.625,2.211363636,24.25,26.93216964,0.414263531,0.046029281,3.728371777,5.641380558,50.54995101,25.64997551,2.564997551,1.409086955,25.64997551,2.564997551,39.07985279,51.14995101,5.114995101,11.58901864,25.64997551,0.559615788,6.781022154,9.563528423,13.05333163,16.18187574,19.48779924,2.631759437,0.263175944,0.420246189,0,0,0,8.682792891,0.868279289,0.938659442,121.6799,2.212361818,24.26116,26.91612303,0.414056405,0.046006267,3.726507641,5.642179109,50.57383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+UMLYSI0303,L,3-methoxy-3-methylbutan-1-ol,CC(C)(CCO)OC,other multi-oxygen compounds,C6H14O2,56539-66-3,62118,PubChem,,33.2,118.2,5.372727273,11.1172,21.8398,12.2388,25.3252,0.505327273,0.992718182,0.556309091,1.151145455,0.25,22,8,4,21,7,0,7,3,0.142857143,0,0,0,14,6,0,2,0,0,0,0,0,0,0,0,2,0,63.63636364,27.27272727,0,9.090909091,0,6,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32,88,107.8852158,36.98224072,114.82,94.74760144,32,60,66.06060606,35.65445462,90.96,68.645104,5.75,4.616666667,2,1.183333333,3,9,3,3.465735903,1.391304348,1.542210825,0.537158271,18,2,1.19235154,7,22.35055152,2.638993315,5.086326547,0.666666667,32,4,0.5,2.8125,11,46,12,1.5,5,2.392857143,5,2.392857143,244,424,163,475,7.847063842,52,67,7.922077922,3.049668929,3.602663936,3.019964362,0.554166667,0.282967836,0.091282895,0.015625,1.407986111,2.452986111,7.942083333,14.27203725,19.75,2.46875,5.591511471,3.851263724,0.044977544,0.024063093,-0.076135762,0.007652985,7.96875,2.936296453,1.020094495,0.000301839,0.063323957,-0.145566546,8.99498E-05,24,1.5,2.079441542,3.496507561,4.17438727,4.990432587,5.693732139,6.517671273,7.22620901,8.0522965,8.762019954,9.588708312,2.708050201,0,3.931825633,0,5.361292166,0,6.86171134,0,8.385944905,2.079441542,2.302585093,2.079441542,1.609437912,0.693147181,0,0,0,0,0,2.079441542,2.302585093,2.079441542,1.609437912,0.693147181,0,0,0,0,0,10.19346698,3.610917913,3.610917913,1,0,2.7363824,2.254805845,6.621320344,3.621320344,3.267766953,1.883883476,0.853553391,0.176776695,0.827665043,0.517331478,0.363085217,0.269126211,0.213388348,0.176776695,5.769675448,2.782153592,2.437423582,1.266451329,0.371312417,0.045643546,0.721209431,0.397450513,0.270824842,0.180921618,0.092828104,0.045643546,6.621320344,3.621320344,3.267766953,1.883883476,0.853553391,0.176776695,23.49568901,1.736543755,28.744119,2.718907669,3.370802501,2.163083419,2.497846022,98.10749561,27.2947517,1.240670532,2.099058711,4.649763026,2.405639062,2.96531293,58.7736439,311.5341228,1.405639062,2.807354922,7,0.875,22,2.116729297,1.304121287,18.29373854,0.931000364,1.25913758,3.070635056,1.240670532,2.181899058,3.265583323,3.265583323,3.265583323,2.860180448,27.2947517,48.00177927,71.8428331,71.8428331,71.8428331,62.92396987,0.278212705,0.489277389,0.732286893,0.732286893,0.732286893,0.641377802,3.218761087,2.277532561,1.193848296,1.193848296,1.193848296,1.59925117,0.282463768,0.496753501,0.743476167,0.743476167,0.743476167,0.651177994,25.3492424,4.259629201,0.53245365,0.503497436,2.156639379,0.269579922,4.313278757,8.519258402,1.0649073,3.258096538,2.912496854,2.552449407,0.319056176,0.325565714,0.436096047,0.054512006,-0.28833428,6.529170654,0.816146332,0.651886416,67,2.392857143,16.75,15.03333333,0.48191165,0.068844521,3.373381553,4.882801923,17.44264589,2.180330737,0.993289891,17.44264589,2.180330737,25.36163497,34.88529179,4.360661473,10.15615107,17.44264597,5.96870756,8.464003363,11.47977191,14.27456762,17.1623407,2.53736567,0.317170709,0.323506448,0.116490414,0.014561302,-0.746967849,6.717902604,0.839737825,0.661786963,67,-7.770920895,1.970157536,0,14,1.75,0.916902429,5.173197841,0.64664973,4.919411029,10.96036971,1.370046214,6.72982407,5.40716846,3.850147602,5.241747015,6.751101469,8.319961022,9.92088533,2.828427125,0.353553391,0.361235995,2.828427125,0.353553391,0.361235995,6.599663291,0.824957911,0.655617423,0.905330086,14.48528137,6.958634325,0.994090618,48.71044028,1.337802448,2.3911917,0.298898963,0.302891516,1,0.125,2,4.7823834,0.597797925,1.693319396,2.410003684,1.609437912,0,1.41706602,0,1.304948722,2.737460871,0.342182609,0.349878336,0.377964473,0.047245559,-0.338039216,6.536487976,0.817060997,0.652275573,10.31777778,0.368492063,2.579444444,2.476066668,0.35372381,17.33246667,2.301780896,4.475992721,0.55949909,0.520711497,2.859310651,0.357413831,4.610785777,8.951985441,1.11899818,3.56490681,3.24110399,2.7931441,2.880323208,4.408983917,5.158116151,6.368310339,2.473163292,0.309145412,0.314602233,0.305027059,0.038128382,-0.412529306,6.534919462,0.816864933,0.652192192,67,2.392857143,16.75,15.03333333,0.48191165,0.068844521,3.373381553,4.882801923,17.44264589,2.180330737,0.993289891,17.44264589,2.180330737,25.36163497,34.88529179,4.360661473,10.15615107,17.44264597,5.96870756,8.464003363,11.47977191,14.27456762,17.1623407,2.53736567,0.317170709,0.323506448,0.116490414,0.014561302,-0.746967849,6.717902604,0.839737825,0.661786963,28,1,7,28,1,0.142857143,7,3.36729583,7,0.875,0.676078432,7,0.875,8,14,1.75,6.647688374,7.003254818,4.043051268,5.82008293,7.786967003,9.729193687,11.67552889,0,0,0,0,0,0,0,0,0,61,1.694444444,15.1875,17.38637637,0.528997248,0.075571035,3.702980739,4.70896698,31.00908221,15.7545411,1.969317638,0.957924606,15.7545411,1.969317638,23.05410272,31.38408221,3.923010276,9.368913402,15.75454158,0.405465108,5.764014863,8.155676186,11.07520036,13.76375569,16.55267028,2.601446676,0.325180835,0.332171943,0.155170227,0.019396278,-0.647353284,6.702375829,0.837796979,0.660983021,61.0144,1.694844444,15.19125,17.37954747,0.528872116,0.075553159,3.702104811,4.709391528,31.01827876,15.758539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alkanone,C6H12O,108-10-1,7909,PubChem,,32.8,100.18,5.272631579,9.8756,18.6289,11.0229,21.7006,0.519768421,0.980468421,0.580152632,1.142136842,0.285714286,19,7,4,18,6,1,7,2,0.111111111,1,0,0,12,6,0,1,0,0,0,0,0,0,0,0,1,0,63.15789474,31.57894737,0,5.263157895,0,5,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26,68,79.73553719,28.1037111,89.16,75.902548,24,48,51.63636364,25.32889259,69.47,53.96848,5.166666667,4.25,1.666666667,1.25,2,7,2.645751311,2.890371758,1.35483871,1.511209391,0.588197464,15,2,1.310313182,4,18.18873053,2.526054707,4.585845777,1,24,3.428571429,0.653061224,2.612244898,10,26,6,1.378783493,4,2.285714286,4,2.285714286,174,289,114,265,6.786218125,38,48,6.675324675,2.784001567,5.675324675,2.654873479,0.547619048,0.19047619,0.095238095,0,1.37962963,3.254166667,6.680555556,11.32250989,17.5,2.5,4.956403471,3.404799764,0.070637856,-0.040895839,0.125955654,0.017766811,8,2.578755647,0.887089618,0.000849145,-0.110482124,0.247416362,0.000364376,21,1.378783493,1.945910149,3.295836866,3.891820298,4.65396035,5.262690189,6.033086222,6.64509097,7.417580402,8.030409562,8.803424212,2.564949357,0,3.713572067,0,4.976733742,0,6.300785795,0,7.655864018,1.945910149,2.079441542,1.609437912,1.609437912,0,0,0,0,0,0,2.079441542,2.302585093,1.791759469,1.945910149,0,0,0,0,0,0,9.46962297,3.36729583,3.555348061,1.055846662,0.188052232,2.603368154,2.145270715,5.86180732,3.125897658,3.023395961,0.942809042,0.942809042,0,0.837401046,0.520982943,0.431913709,0.23570226,0.23570226,0,5.192705341,2.620626365,2.299986098,0.695705769,0.574914957,0,0.741815049,0.436771061,0.328569443,0.173926442,0.143728739,0,5.86180732,3.125897658,3.023395961,0.942809042,0.942809042,0,19.33273622,1.654068949,21.90865123,2.606723697,3.045939258,2.116654072,2.370974343,80.71062276,22.18129774,1.167436723,1.956066972,4.230388542,1.378783493,2.779475245,41.07740642,203.05865,1.378783493,2.625814584,6,0.857142857,17.65148445,2.001032983,1.23863892,14.72926917,0.875221883,1.20739461,2.67238404,1.167436723,1.878477513,2.970840013,2.970840013,2.747264881,1.95822751,22.18129774,35.69107275,56.44596025,56.44596025,52.19803274,37.20632268,0.27482501,0.44221035,0.699362219,0.699362219,0.64673064,0.46098421,3.08049079,2.36945,1.2770875,1.2770875,1.500662633,2.289700004,0.27482501,0.44221035,0.699362219,0.699362219,0.64673064,0.46098421,18.75538595,3.414213562,0.487744795,0.373303478,2,0.285714286,4,6.828427125,0.975489589,2.772588722,2.765108219,2.5,0.357142857,0.278558006,0.5,0.071428571,-0.210720997,5.560090548,0.79429865,0.521557305,48,2.285714286,13.71428571,11.83333333,0.492203862,0.082033977,2.953223175,4.521788577,14.17597107,2.025138724,0.806086973,14.17597107,2.025138724,21.64007268,28.35194213,4.050277447,8.732949524,14.17597291,5.59471138,7.788626066,10.68118266,13.2162926,15.93039272,2.426262835,0.346608976,0.269456492,0,0,0,5.739236321,0.819890903,0.531197875,48,-6.426891805,2.132600461,0,12,1.714285714,0.755426872,4.414213562,0.630601937,4.14626437,9.435385883,1.347912269,5.82008293,4.927315195,3.663561646,4.976733742,6.368187186,7.788626066,9.222170124,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.893113616,11.82718272,5.981268914,0.996878152,35.88761348,1.222681352,1.816496581,0.259499512,0.181464209,1,0.142857143,2,3.632993162,0.518999023,1.466337069,2.28143274,1.466337069,0,1.358123484,0,1.278874112,2.562948829,0.366135547,0.286117955,0.562948829,0.080421261,-0.174671756,5.561848899,0.794549843,0.52165343,8.444444444,0.402116402,2.412698413,2.248851359,0.37480856,13.49310816,2.136940824,3.815288462,0.545041209,0.407069165,2.606803347,0.372400478,4.261858866,7.630576925,1.090082418,3.282657138,3.027112858,2.639415511,2.603311063,4.094262329,4.675754999,5.840902485,2.447753146,0.349679021,0.272137332,0.351391722,0.050198817,-0.317945932,5.563998554,0.794856936,0.521770906,48,2.285714286,13.71428571,11.83333333,0.492203862,0.082033977,2.953223175,4.521788577,14.17597107,2.025138724,0.806086973,14.17597107,2.025138724,21.64007268,28.35194213,4.050277447,8.732949524,14.17597291,5.59471138,7.788626066,10.68118266,13.2162926,15.93039272,2.426262835,0.346608976,0.269456492,0,0,0,5.739236321,0.819890903,0.531197875,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,44.5,1.589285714,12.67857143,14.38485735,0.528133809,0.088022301,3.168802852,4.400027701,25.96314285,13.10657143,1.872367347,0.782242369,13.10657143,1.872367347,20.3329338,26.14171428,3.734530612,8.087861145,13.10657758,0.223143551,5.454252168,7.528209951,10.38174844,12.81313161,15.46640683,2.4526457,0.350377957,0.272744371,0.068013005,0.009716144,-0.817185628,5.725615498,0.817945071,0.530475526,44.5012,1.589328571,12.679,14.38170258,0.528116397,0.088019399,3.16869838,4.400078348,25.96457826,13.10698913,1.872427018,0.782252057,13.10698913,1.872427018,20.3335127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alkanone,C6H12O,565-69-5,11265,PubChem,,30.7,100.18,5.272631579,9.8756,18.6289,11.0229,21.7006,0.519768421,0.980468421,0.580152632,1.142136842,0.285714286,19,7,4,18,6,1,7,2,0.111111111,1,0,0,12,6,0,1,0,0,0,0,0,0,0,0,1,0,63.15789474,31.57894737,0,5.263157895,0,5,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26,68,79.73553719,28.1037111,91,75.254912,26,52,55.63636364,27.99333888,76.11,56.446384,5.166666667,4.25,1.777777778,1.416666667,2,7,2.645751311,2.890371758,1.35483871,1.511209391,0.588197464,15,2,1.354079995,6,17.8730874,2.390457219,4.503855938,1,23,3.285714286,0.612244898,2.408163265,9,29,8,1.448815636,4,2.19047619,4,2.19047619,168,273,106,233,6.66900067,36,46,6.675324675,2.784001567,2.380130167,2.654873479,0.557142857,0.304761905,0.05952381,0,1.319444444,3.511574074,7.023148148,12.18938907,17.5,2.5,4.956403471,3.398141088,0.070637856,-0.040895839,0.126121826,0.017672557,8,2.585571719,0.897277662,0.000860648,-0.110271788,0.246577436,0.000374291,21,1.378783493,1.945910149,3.295836866,3.970291914,4.691347882,5.398162702,6.120297419,6.834108739,7.556427969,8.272059622,8.994296558,2.564949357,0,3.713572067,0,5.056245805,0,6.463029457,0,7.890956716,1.945910149,2.079441542,1.945910149,1.098612289,0,0,0,0,0,0,2.079441542,2.302585093,2.302585093,1.098612289,0,0,0,0,0,0,9.660268837,3.36729583,3.555348061,1.055846662,0.188052232,2.60307797,2.150292971,5.86180732,3.180739213,2.629549111,1.782021738,0.471404521,0,0.837401046,0.530123202,0.375649873,0.297003623,0.23570226,0,5.192705341,2.70815999,1.974566772,0.992412263,0.40824829,0,0.741815049,0.451359998,0.282080967,0.165402044,0.204124145,0,5.86180732,3.180739213,2.629549111,1.782021738,0.471404521,0,19.66178554,1.627173667,22.38932109,2.694257322,3.113264398,2.190321638,2.483659956,80.71062276,22.18129774,1.167436723,1.884172925,4.251185325,2.521640636,2.776119445,39.56763142,195.554525,1.378783493,2.625814584,6,0.857142857,17.65148445,1.970221248,1.245613437,14.55360052,0.96551028,1.270647212,3.253112643,1.167436723,1.733483434,2.535857776,2.970840013,2.747264881,2.076539484,22.18129774,32.93618524,48.18129774,56.44596025,52.19803274,39.4542502,0.27482501,0.408077452,0.596963523,0.699362219,0.64673064,0.488835903,3.08049079,2.51444408,1.712069738,1.2770875,1.500662633,2.171388029,0.27482501,0.408077452,0.596963523,0.699362219,0.64673064,0.488835903,19.08443528,3.831493958,0.54735628,0.408357701,2.05288084,0.293268691,4.10576168,7.662987915,1.094712559,2.890371758,2.766317013,2.45983181,0.351404544,0.273633789,0.093061608,0.013294515,-0.721860612,5.552761685,0.793251669,0.521156324,46,2.19047619,13.14285714,12,0.524034701,0.087339117,3.144208207,4.430816799,13.63462203,1.947803147,0.794250172,13.63462203,1.947803147,19.85726871,27.26924405,3.895606293,8.706490362,13.63462517,5.484796933,7.721791777,10.49573647,13.04245616,15.68479403,2.350941918,0.335848845,0.25986933,0.048608437,0.006944062,-0.919301837,5.750849644,0.821549949,0.531812409,46,-6.159104646,1.776169319,0,12,1.714285714,0.755426872,4.628651282,0.661235897,4.306931632,9.710395916,1.387199417,5.80814249,4.971323474,3.663561646,4.976733742,6.381816017,7.833203949,9.311722986,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.908782632,12.05985573,5.968049074,0.994674846,35.80829445,1.246819195,2.201850425,0.314550061,0.239951469,1,0.142857143,2,4.40370085,0.629100121,1.563975538,2.292173574,1.516347489,0,1.325862622,0,1.230370276,2.562948829,0.366135547,0.286117955,0.169101979,0.024157426,-0.540295917,5.555979679,0.793711383,0.521332454,8.541666667,0.406746032,2.44047619,2.23350476,0.372250793,13.40102856,2.143651097,3.87952078,0.554217254,0.412144658,2.672307736,0.381758248,4.365973724,7.759041561,1.108434509,3.143621215,3.04993562,2.641823012,2.639682341,4.150095046,4.80007426,5.972970241,2.406659833,0.343808548,0.266990297,0.061390182,0.008770026,-0.848330755,5.556666987,0.79380957,0.521370059,46,2.19047619,13.14285714,12,0.524034701,0.087339117,3.144208207,4.430816799,13.63462203,1.947803147,0.794250172,13.63462203,1.947803147,19.85726871,27.26924405,3.895606293,8.706490362,13.63462517,5.484796933,7.721791777,10.49573647,13.04245616,15.68479403,2.350941918,0.335848845,0.25986933,0.048608437,0.006944062,-0.919301837,5.750849644,0.821549949,0.531812409,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,42.5,1.517857143,12.10714286,14.63437002,0.567501699,0.094583616,3.405010193,4.313521925,25.02490021,12.6374501,1.805350015,0.771161618,12.6374501,1.805350015,18.84162152,25.20347164,3.600495948,8.063131807,12.63745986,0.223143551,5.350672597,7.470308712,10.2053365,12.653946,15.23397362,2.323830709,0.331975816,0.256343141,0.03786306,0.005409009,-0.995249002,5.750979372,0.821568482,0.531819267,42.5012,1.5179,12.10757143,14.63116157,0.567480492,0.094580082,3.40488295,4.313569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alkanone,C6H12O,565-61-7,11262,PubChem,,29,100.18,5.272631579,9.8756,18.6289,11.0229,21.7006,0.519768421,0.980468421,0.580152632,1.142136842,0.285714286,19,7,4,18,6,1,7,2,0.111111111,1,0,0,12,6,0,1,0,0,0,0,0,0,0,0,1,0,63.15789474,31.57894737,0,5.263157895,0,5,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26,68,79.73553719,28.1037111,90.5,75.363288,26,51,54.63636364,27.66111574,74.07,55.879184,5.166666667,4.25,1.777777778,1.375,2,7,2.645751311,2.890371758,1.35483871,1.511209391,0.588197464,15,2,1.34275231,6,17.8730874,2.390457219,4.503855938,1,23,3.285714286,0.612244898,2.408163265,9,29,8,1.448815636,4,2.19047619,4,2.19047619,168,278,106,245,6.66900067,36,46,6.675324675,2.784001567,2.380130167,2.654873479,0.557142857,0.304761905,0.05952381,0,1.372685185,3.374768519,6.789351852,11.83892591,17.5,2.5,4.956403471,3.408142459,0.070637856,-0.040895839,0.125873226,0.017813751,8,2.58170456,0.89267475,0.00085411,-0.11039099,0.246965044,0.000369677,21,1.378783493,1.945910149,3.295836866,3.970291914,4.691347882,5.398162702,6.120297419,6.834108739,7.556427969,8.272059622,8.994296558,2.564949357,0,3.713572067,0,5.056245805,0,6.463029457,0,7.890956716,1.945910149,2.079441542,1.945910149,1.098612289,0,0,0,0,0,0,2.079441542,2.302585093,2.197224577,1.386294361,0,0,0,0,0,0,9.660268837,3.36729583,3.555348061,1.055846662,0.188052232,2.60307797,2.150292971,5.86180732,3.180739213,2.629549111,1.782021738,0.471404521,0,0.837401046,0.530123202,0.375649873,0.297003623,0.23570226,0,5.192705341,2.685504621,1.919946271,1.306356179,0.287457479,0,0.741815049,0.447584103,0.274278039,0.21772603,0.143728739,0,5.86180732,3.180739213,2.629549111,1.782021738,0.471404521,0,19.66178554,1.627173667,22.38932109,2.671601953,3.104613364,2.168030877,2.4575601,80.71062276,22.18129774,1.167436723,1.884172925,4.251185325,2.521640636,2.776119445,39.56763142,195.554525,1.378783493,2.625814584,7,1,19.65148445,1.970221248,1.245613437,14.55360052,0.96551028,1.270647212,3.253112643,1.167436723,1.878477513,3.076103171,3.391892645,3.168317512,2.274016983,22.18129774,35.69107275,58.44596025,64.44596025,60.19803274,43.20632268,0.27482501,0.44221035,0.724142105,0.798481762,0.745850183,0.535323867,3.08049079,2.36945,1.171824342,0.856034869,1.079610001,1.97391053,0.27482501,0.44221035,0.724142105,0.798481762,0.745850183,0.535323867,19.08443528,3.831493958,0.54735628,0.408357701,2.05288084,0.293268691,4.10576168,7.662987915,1.094712559,2.890371758,2.766317013,2.45983181,0.351404544,0.273633789,0.093061608,0.013294515,-0.721860612,5.552761685,0.793251669,0.521156324,46,2.19047619,13.14285714,12,0.524034701,0.087339117,3.144208207,4.430816799,13.63462203,1.947803147,0.794250172,13.63462203,1.947803147,19.85726871,27.26924405,3.895606293,8.706490362,13.63462517,5.484796933,7.721791777,10.49573647,13.04245616,15.68479403,2.350941918,0.335848845,0.25986933,0.048608437,0.006944062,-0.919301837,5.750849644,0.821549949,0.531812409,46,-6.159104646,1.776169319,0,12,1.714285714,0.755426872,4.628651282,0.661235897,4.306931632,9.710395916,1.387199417,5.80814249,4.971323474,3.663561646,4.976733742,6.381816017,7.833203949,9.311722986,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.908782632,12.05985573,5.968049074,0.994674846,35.80829445,1.246819195,2.201850425,0.314550061,0.239951469,1,0.142857143,2,4.40370085,0.629100121,1.563975538,2.292173574,1.516347489,0,1.325862622,0,1.230370276,2.562948829,0.366135547,0.286117955,0.169101979,0.024157426,-0.540295917,5.555979679,0.793711383,0.521332454,8.541666667,0.406746032,2.44047619,2.23350476,0.372250793,13.40102856,2.143651097,3.87952078,0.554217254,0.412144658,2.672307736,0.381758248,4.365973724,7.759041561,1.108434509,3.143621215,3.04993562,2.641823012,2.639682341,4.150095046,4.80007426,5.972970241,2.406659833,0.343808548,0.266990297,0.061390182,0.008770026,-0.848330755,5.556666987,0.79380957,0.521370059,46,2.19047619,13.14285714,12,0.524034701,0.087339117,3.144208207,4.430816799,13.63462203,1.947803147,0.794250172,13.63462203,1.947803147,19.85726871,27.26924405,3.895606293,8.706490362,13.63462517,5.484796933,7.721791777,10.49573647,13.04245616,15.68479403,2.350941918,0.335848845,0.25986933,0.048608437,0.006944062,-0.919301837,5.750849644,0.821549949,0.531812409,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,42.5,1.517857143,12.10714286,14.59294701,0.565515571,0.094252595,3.393093426,4.30512028,24.92301184,12.58650592,1.798072274,0.769933629,12.58650592,1.798072274,18.60695904,25.10158327,3.585940466,8.060283462,12.58651618,0.223143551,5.338739281,7.465006667,10.18470947,12.63700883,15.20782599,2.290802482,0.327257497,0.251991351,0.127249147,0.01817845,-0.626741584,5.756701613,0.822385945,0.532121603,42.5012,1.5179,12.10757143,14.58976541,0.565495327,0.094249221,3.392971961,4.305171919,24.92442949,12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compounds,C6H14O2,105-57-7,7765,PubChem,,22.4,118.2,5.372727273,11.1172,21.8398,12.2388,25.3252,0.505327273,0.992718182,0.556309091,1.151145455,0.25,22,8,3,21,7,0,7,4,0.19047619,0,0,0,14,6,0,2,0,0,0,0,0,0,0,0,2,0,63.63636364,27.27272727,0,9.090909091,0,6,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28,92,115.4710744,35.30669627,122.14,95.721696,27,67,76.09090909,32.31557036,103.07,70.65432,5.333333333,4.666666667,2.166666667,1.611111111,1,7,2.645751311,3.871201011,1.5,1.622389604,0.508249709,18,1,1.302993695,6,23.25211835,3.017804311,4.720931985,1,37,4.625,0.875,3.3125,13,46,12,1.905639062,6,2.678571429,6,2.678571429,271,431,195,411,8.219930079,61,75,7.922077922,5.066543213,4.922077922,5.017193766,0.491666667,0.255242674,0.125886613,0.031986532,1.37037037,1.56,6.24,8.029544714,17.33333333,2.166666667,5.689383877,3.565764635,0.056683864,0.022214747,-0.07874601,0.006475538,7.666666667,2.945274023,0.960998894,0.000321107,0.06284044,-0.148236895,7.5819E-05,18,1.905639062,2.079441542,3.36729583,4.007333185,4.709530201,5.370638028,6.084499413,6.751101469,7.467942332,8.135932772,8.853522561,2.708050201,0,3.761200116,0,4.990432587,0,6.304448802,0,7.656810091,2.079441542,2.079441542,1.945910149,1.791759469,1.098612289,0.693147181,0,0,0,0,2.079441542,2.079441542,1.945910149,1.791759469,1.098612289,0.693147181,0,0,0,0,9.537916008,3.610917913,3.610917913,1,0,2.751012246,2.245682124,6.405777394,3.808060412,2.682521985,1.562948829,1.129936127,0.288675135,0.800722174,0.54400863,0.383217426,0.260491471,0.225987225,0.144337567,5.808060412,3.040318622,1.478313168,0.80274943,0.517528619,0.096225045,0.726007552,0.434331232,0.211187595,0.133791572,0.103505724,0.048112522,6.405777394,3.808060412,2.682521985,1.562948829,1.129936127,0.288675135,24.66485906,1.878752807,26.51036701,2.968889104,3.496823185,2.389778356,2.807745766,98.10749561,27.2947517,1.240670532,2.363698337,4.612040278,1.905639062,2.964571277,66.18355343,345.9030208,1.405639062,2.896291529,5,0.625,18,2.370864648,1.294033502,18.5203906,0.755738641,1.102614844,2.164971808,1.240670532,1.638619964,2.526280482,2.901946959,2.901946959,2.699245522,27.2947517,36.0496392,55.5781706,63.8428331,63.8428331,59.38340148,0.278212705,0.367450407,0.566502796,0.650743684,0.650743684,0.605289138,3.218761087,2.820811655,1.933151137,1.557484659,1.557484659,1.760186097,0.282463768,0.373065015,0.575158906,0.660686986,0.660686986,0.614537899,26.65642289,4.414213562,0.551776695,0.515882673,2,0.25,4,8.828427125,1.103553391,3.433987204,2.888532276,2.598076211,0.324759526,0.331721509,0.288675135,0.036084392,-0.431672498,6.559884359,0.819985545,0.653516947,75,2.678571429,18.75,14.31666667,0.41708752,0.059583931,2.919612641,5.111987788,19.54202305,2.442752881,1.032775617,19.54202305,2.442752881,29.63985773,39.0840461,4.885505763,10.32301992,19.54202306,6.23636959,8.754160749,11.96172461,14.82466521,17.85439454,2.341896018,0.292737002,0.295654087,0,0,0,6.721964274,0.840245534,0.66199696,75,-8.698792047,2.52445867,0,14,1.75,0.916902429,4.362339833,0.545292479,4.164277569,10.37020798,1.296275997,6.828712072,4.900527807,3.761200116,4.990432587,6.304448802,7.666221926,9.058703197,2.828427125,0.353553391,0.361235995,2.828427125,0.353553391,0.361235995,6.599663291,0.824957911,0.655617423,0.952015103,13.45945742,6.967160088,0.995308584,48.77012062,1.383130245,2.511522628,0.313940329,0.319949676,1,0.125,2,5.023045256,0.627880657,1.7847908,2.426178829,1.673976434,0,1.497885427,0,1.383396648,2.776551668,0.347068958,0.354804608,0.338873676,0.042359209,-0.375969733,6.565312235,0.820664029,0.653804308,9.836944444,0.351319444,2.459236111,2.716495952,0.38807085,19.01547166,2.270682647,4.657984927,0.582248116,0.534558463,2.659874711,0.332484339,4.316355344,9.315969854,1.164496232,3.756346352,3.146791307,2.776963754,2.659716726,4.190658071,4.790273468,5.96004991,2.544377903,0.318047238,0.324465292,0.200902294,0.025112787,-0.557612084,6.563389909,0.820423739,0.653702564,75,2.678571429,18.75,14.31666667,0.41708752,0.059583931,2.919612641,5.111987788,19.54202305,2.442752881,1.032775617,19.54202305,2.442752881,29.63985773,39.0840461,4.885505763,10.32301992,19.54202306,6.23636959,8.754160749,11.96172461,14.82466521,17.85439454,2.341896018,0.292737002,0.295654087,0,0,0,6.721964274,0.840245534,0.66199696,28,1,7,28,1,0.142857143,7,3.36729583,7,0.875,0.676078432,7,0.875,8,14,1.75,6.647688374,7.003254818,4.043051268,5.82008293,7.786967003,9.729193687,11.67552889,0,0,0,0,0,0,0,0,0,62,1.722222222,15.4375,17.82808303,0.51254986,0.073221409,3.58784902,4.766970107,31.86903667,16.18451833,2.023064792,0.967279823,16.18451833,2.023064792,24.01478799,32.24403667,4.030504583,9.238599787,16.18451866,0.405465108,5.838094812,8.216451208,11.19237762,13.89273633,16.71722061,2.315080935,0.289385117,0.291652943,0,0,0,6.731433328,0.841429166,0.662486039,62.0312,1.723088889,15.44545,17.81756075,0.51226783,0.073181119,3.58587481,4.767865623,31.88628665,16.19254333,2.024067916,0.967452054,16.19254333,2.024067916,2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+UMLYSI0367,L,methyl 2-methylpropanoate,CC(C)C(=O)OC,saturated 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compounds,C5H12O2,53778-73-7,40895,PubChem,,19.8,104.17,5.482631579,9.5904,18.9562,10.4774,21.91,0.504757895,0.997694737,0.551442105,1.153157895,0.285714286,19,7,3,18,6,0,6,3,0.166666667,0,0,0,12,5,0,2,0,0,0,0,0,0,0,0,2,0,63.15789474,26.31578947,0,10.52631579,0,5,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24,80,99.88521579,28.31779443,101.16,86.3241,23,47,52,27.09704999,72.57,53.9118,4.833333333,3.7,1.916666667,1.15,1,6,2.449489743,3.17805383,1.448275862,1.574610106,0.56094383,16,1,1.239362838,5,18.44734799,2.654735212,4.126706124,0.666666667,28,4,0.571428571,2.612244898,10,30,9,1.556656707,5,2.380952381,5,2.380952381,181,321,122,354,6.946161136,45,50,6.922077922,4.090937571,3.760188211,4.045398377,0.5,0.267176871,0.095044836,0.021915584,1.606481481,2.732916667,7.754814815,10.06583005,17.83333333,2.547619048,4.856002902,3.159517476,0.061089529,-0.043229605,0.13503849,0.013284685,8.047619048,2.568402878,0.863068587,0.000821327,-0.1110028,0.251045289,0.000324427,17,1.556656707,1.945910149,3.218875825,3.850147602,4.532599493,5.187385806,5.877735782,6.538139824,7.230563153,7.892452044,8.58541243,2.564949357,0,3.610917913,0,4.844187086,0,6.150602768,0,7.486052618,1.945910149,1.945910149,1.791759469,1.386294361,0.693147181,0,0,0,0,0,1.945910149,1.945910149,1.791759469,1.386294361,0.693147181,0,0,0,0,0,9.28804188,3.36729583,3.36729583,1,0,2.614865278,2.142011297,5.698670613,3.308060412,2.302095141,1.478397839,0.696923425,0.204124145,0.814095802,0.551343402,0.383682523,0.295679568,0.232307808,0.204124145,4.847025718,2.478725677,1.517413598,0.830302717,0.31023786,0.11785113,0.692432245,0.413120946,0.252902266,0.166060543,0.10341262,0.11785113,5.698670613,3.308060412,2.302095141,1.478397839,0.696923425,0.204124145,21.63281953,1.723209833,21.19445472,2.413673362,3.076644828,1.982343858,2.282526329,80.71062276,24.08143227,1.267443804,2.135932757,4.21617463,2.807354922,2.773312733,44.85458789,210.8087315,1.448815636,2.688721876,7,1,19.65148445,2.205114616,1.236303072,14.74169749,0.825971181,1.158812582,2.459659311,1.267443804,2.245098682,3.536886724,3.536886724,3.536886724,3.089736459,24.08143227,42.65687495,67.20084775,67.20084775,67.20084775,58.70499272,0.298367569,0.528516241,0.83261466,0.83261466,0.83261466,0.727351502,2.98048371,2.002828832,0.71104079,0.71104079,0.71104079,1.158191054,0.303948825,0.538402653,0.848189529,0.848189529,0.848189529,0.740957321,19.84836247,3.939231012,0.562747287,0.416788015,1.969615506,0.281373644,3.939231012,7.878462024,1.125494575,2.995732274,2.752839537,2.458386904,0.351198129,0.273455164,0.215080985,0.030725855,-0.467178589,5.570942974,0.795848996,0.522150099,50,2.380952381,14.28571429,11.61666667,0.471969994,0.078661666,2.831819966,4.605170186,14.86357869,2.123368384,0.820486371,14.86357869,2.123368384,22.55648517,29.72715738,4.246736768,8.823206221,14.86357965,5.693732139,7.932003152,10.86759655,13.45609042,16.21265509,2.394401389,0.342057341,0.265437869,0.059016506,0.008430929,-0.860318553,5.72615888,0.818022697,0.530504376,50,-6.694678963,2.195077851,0,12,1.714285714,0.755426872,4.334200532,0.619171505,4.073877841,9.130266124,1.304323732,5.869296913,4.765742035,3.610917913,4.844187086,6.167516491,7.540621529,8.944158831,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.945160118,11.45945742,5.969002809,0.994833801,35.81401685,1.284362278,2.316496581,0.330928083,0.255382164,1,0.142857143,2,4.632993162,0.661856166,1.642227735,2.30716955,1.575536361,0,1.389760569,0,1.287534953,2.590770275,0.370110039,0.289400234,0.196923425,0.028131918,-0.493991833,5.574879675,0.796411382,0.522364849,8.283055556,0.394431217,2.366587302,2.393986775,0.398997796,14.36392065,2.124241775,4.017017002,0.573859572,0.422732569,2.55690369,0.365271956,4.197913496,8.034034004,1.147719143,3.247582134,2.99553753,2.631895624,2.499241349,4.013658965,4.571570731,5.722750231,2.411173456,0.344453351,0.267559918,0.153043803,0.0218634,-0.570628976,5.574272268,0.79632461,0.522331724,50,2.380952381,14.28571429,11.61666667,0.471969994,0.078661666,2.831819966,4.605170186,14.86357869,2.123368384,0.820486371,14.86357869,2.123368384,22.55648517,29.72715738,4.246736768,8.823206221,14.86357965,5.693732139,7.932003152,10.86759655,13.45609042,16.21265509,2.394401389,0.342057341,0.265437869,0.059016506,0.008430929,-0.860318553,5.72615888,0.818022697,0.530504376,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,45,1.607142857,12.78571429,13.82385392,0.524251734,0.087375289,3.145510406,4.412798293,26.04604301,13.27302151,1.896145929,0.786078859,13.27302151,1.896145929,20.23152726,26.40318587,3.771883696,8.025873991,13.2730269,0.405465108,5.467532576,7.5879122,10.41812115,12.88769586,15.53506769,2.371386667,0.338769524,0.262501662,0.02878882,0.004112689,-1.078543298,5.726309447,0.818044207,0.530512369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compounds,C5H12O2,7778-85-0,24509,PubChem,,18.6,104.17,5.482631579,9.5904,18.9562,10.4774,21.91,0.504757895,0.997694737,0.551442105,1.153157895,0.285714286,19,7,3,18,6,0,6,3,0.166666667,0,0,0,12,5,0,2,0,0,0,0,0,0,0,0,2,0,63.15789474,26.31578947,0,10.52631579,0,5,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24,88,111.4710744,29.09261294,111.08,93.235844,23,51,57.36363636,27.76149628,79.93,61.04772,4.833333333,4.166666667,1.916666667,0.972222222,1,6,2.449489743,3.17805383,1.448275862,1.574610106,0.56094383,16,1,1.163236268,5,18.44734799,2.654735212,4.126706124,0.666666667,28,4,0.571428571,2.612244898,10,30,9,1.556656707,5,2.380952381,5,2.380952381,181,317,122,338,6.946161136,45,50,6.922077922,4.090937571,3.760188211,4.045398377,0.5,0.267176871,0.095044836,0.021915584,1.106481481,1.365555556,5.270092593,6.456478629,15.83333333,2.261904762,4.872887296,2.974753993,0.068992871,-0.041275029,0.138125656,0.012034851,7.761904762,2.556067025,0.809047625,0.000832115,-0.110798806,0.255581738,0.00028059,17,1.556656707,1.945910149,3.218875825,3.850147602,4.532599493,5.187385806,5.877735782,6.538139824,7.230563153,7.892452044,8.58541243,2.564949357,0,3.610917913,0,4.844187086,0,6.150602768,0,7.486052618,1.945910149,1.945910149,1.791759469,1.386294361,0.693147181,0,0,0,0,0,1.945910149,1.945910149,1.791759469,1.386294361,0.693147181,0,0,0,0,0,9.28804188,3.36729583,3.36729583,1,0,2.614865278,2.142011297,5.698670613,3.308060412,2.302095141,1.478397839,0.696923425,0.204124145,0.814095802,0.551343402,0.383682523,0.295679568,0.232307808,0.204124145,5.100953631,2.326472536,1.501661279,0.803743642,0.30274943,0.068041382,0.728707662,0.387745423,0.25027688,0.160748728,0.100916477,0.068041382,5.698670613,3.308060412,2.302095141,1.478397839,0.696923425,0.204124145,22.17082433,1.723209833,21.19445472,2.235147106,2.982165584,1.80305083,2.050455312,80.71062276,24.08143227,1.267443804,2.135932757,4.21617463,2.807354922,2.773312733,44.85458789,210.8087315,1.448815636,2.688721876,7,1,19.65148445,2.205114616,1.236303072,14.74169749,0.825971181,1.158812582,2.459659311,1.267443804,1.773214355,2.970840013,3.076103171,3.391892645,2.94474238,24.08143227,33.69107275,56.44596025,58.44596025,64.44596025,55.95010522,0.298367569,0.417430464,0.699362219,0.724142105,0.798481762,0.693218604,2.98048371,2.474713158,1.2770875,1.171824342,0.856034869,1.303185133,0.303948825,0.425238908,0.712444471,0.737687889,0.813418141,0.706185934,19.84836247,3.939231012,0.562747287,0.416788015,1.969615506,0.281373644,3.939231012,7.878462024,1.125494575,2.995732274,2.752839537,2.458386904,0.351198129,0.273455164,0.215080985,0.030725855,-0.467178589,5.570942974,0.795848996,0.522150099,50,2.380952381,14.28571429,11.61666667,0.471969994,0.078661666,2.831819966,4.605170186,14.86357869,2.123368384,0.820486371,14.86357869,2.123368384,22.55648517,29.72715738,4.246736768,8.823206221,14.86357965,5.693732139,7.932003152,10.86759655,13.45609042,16.21265509,2.394401389,0.342057341,0.265437869,0.059016506,0.008430929,-0.860318553,5.72615888,0.818022697,0.530504376,50,-6.694678963,2.195077851,0,12,1.714285714,0.755426872,4.334200532,0.619171505,4.073877841,9.130266124,1.304323732,5.869296913,4.765742035,3.610917913,4.844187086,6.167516491,7.540621529,8.944158831,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.945160118,11.45945742,5.969002809,0.994833801,35.81401685,1.284362278,2.316496581,0.330928083,0.255382164,1,0.142857143,2,4.632993162,0.661856166,1.642227735,2.30716955,1.575536361,0,1.389760569,0,1.287534953,2.590770275,0.370110039,0.289400234,0.196923425,0.028131918,-0.493991833,5.574879675,0.796411382,0.522364849,8.283055556,0.394431217,2.366587302,2.393986775,0.398997796,14.36392065,2.124241775,4.017017002,0.573859572,0.422732569,2.55690369,0.365271956,4.197913496,8.034034004,1.147719143,3.247582134,2.99553753,2.631895624,2.499241349,4.013658965,4.571570731,5.722750231,2.411173456,0.344453351,0.267559918,0.153043803,0.0218634,-0.570628976,5.574272268,0.79632461,0.522331724,50,2.380952381,14.28571429,11.61666667,0.471969994,0.078661666,2.831819966,4.605170186,14.86357869,2.123368384,0.820486371,14.86357869,2.123368384,22.55648517,29.72715738,4.246736768,8.823206221,14.86357965,5.693732139,7.932003152,10.86759655,13.45609042,16.21265509,2.394401389,0.342057341,0.265437869,0.059016506,0.008430929,-0.860318553,5.72615888,0.818022697,0.530504376,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,42.5,1.517857143,12.07142857,14.49568765,0.554215417,0.092369236,3.325292504,4.307437778,24.48025655,12.49012828,1.784304039,0.767596829,12.49012828,1.784304039,18.93917724,24.83739941,3.548199915,7.755593172,12.49014051,0.405465108,5.341735987,7.413178838,10.1707057,12.58678975,15.16850621,2.462258389,0.351751198,0.273933538,0.052554326,0.007507761,-0.89557407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compounds,C5H12O2,462-95-3,10024,PubChem,,18.5,104.17,5.482631579,9.5904,18.9562,10.4774,21.91,0.504757895,0.997694737,0.551442105,1.153157895,0.285714286,19,7,2,18,6,0,6,4,0.222222222,0,0,0,12,5,0,2,0,0,0,0,0,0,0,0,2,0,63.15789474,26.31578947,0,10.52631579,0,5,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,86,109.4710744,27.97780368,109.62,89.9,20,52,59.27272727,24.65112406,82,58.3376,4.5,3.833333333,2,1.333333333,0,5,2.236067977,3.465735903,1.555555556,1.640670712,0.537158271,16,0,1.28445705,4,19.24902768,3.055050463,3.627465013,1,33,4.714285714,0.897959184,2.857142857,12,28,9,1.950212065,6,2.666666667,6,2.666666667,202,338,146,338,7.297142506,54,56,6.922077922,5.922077922,5.922077922,5.856154977,0.452380952,0.219387755,0.096598639,0.042857143,1.0625,1.351666667,5.406666667,4.623760096,15.5,2.214285714,4.932748273,2.90044366,0.074886278,-0.039955033,0.139740753,0.011428571,7.714285714,2.565966074,0.797584224,0.000853715,-0.110398222,0.256720966,0.000270545,13,1.950212065,1.945910149,3.135494216,3.713572067,4.317488114,4.919980926,5.533389489,6.142037406,6.758094504,7.368339686,7.985143931,2.564949357,0,3.496507561,0,4.574710979,0,5.720311777,0,6.900730664,1.945910149,1.791759469,1.609437912,1.386294361,1.098612289,0.693147181,0,0,0,0,1.945910149,1.791759469,1.609437912,1.386294361,1.098612289,0.693147181,0,0,0,0,8.761236807,3.36729583,3.36729583,1,0,2.627114062,2.132338507,5.535533906,3.414213562,2.060660172,1.207106781,0.676776695,0.353553391,0.790790558,0.569035594,0.412132034,0.301776695,0.225592232,0.176776695,4.937816924,2.568914101,1.10344969,0.574914957,0.225592232,0.11785113,0.705402418,0.42815235,0.220689938,0.143728739,0.075197411,0.058925565,5.535533906,3.414213562,2.060660172,1.207106781,0.676776695,0.353553391,22.48528137,1.840004522,19.78207923,2.490268736,3.102045534,2.034178074,2.36877908,80.71062276,24.08143227,1.267443804,2.398302995,4.168986958,1.950212065,2.774244972,50.3643629,233.4632697,0.863120569,2.751629167,4,0.571428571,13.65148445,2.440007983,1.22222776,15.01828953,0.666081376,1.019498601,1.729713704,1.267443804,1.667951197,2.589518303,2.589518303,2.589518303,2.36594317,24.08143227,31.69107275,49.20084775,49.20084775,49.20084775,44.95292024,0.298367569,0.392650579,0.60959569,0.60959569,0.60959569,0.556964111,2.98048371,2.579976316,1.658409211,1.658409211,1.658409211,1.881984343,0.303948825,0.399995491,0.620998771,0.620998771,0.620998771,0.567382667,20.48528137,4.027339492,0.575334213,0.423512769,1.847759065,0.263965581,3.69551813,8.054678984,1.150668426,3.091042453,2.73919265,2.513669746,0.359095678,0.280215753,0.099456184,0.014208026,-0.701657747,5.592530245,0.798932892,0.523325839,56,2.666666667,16,11.15,0.407912148,0.067985358,2.447472888,4.844187086,16.6253823,2.375054615,0.854540149,16.6253823,2.375054615,26.72321698,33.2507646,4.750109229,8.945071894,16.62538247,5.973809612,8.168769824,11.3726629,13.96806081,16.91462223,2.341896018,0.334556574,0.258697326,0,0,0,5.721964274,0.817423468,0.530281599,56,-7.498040439,2.885095623,0,12,1.714285714,0.755426872,3.801937736,0.543133962,3.603875472,8.702204129,1.243172018,5.934894196,4.522970604,3.555348061,4.691347882,5.894402834,7.133295955,8.394121194,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.975489589,10.82842712,5.985143843,0.997523974,35.91086306,1.310251729,2.366025404,0.338003629,0.261813582,1,0.142857143,2,4.732050808,0.676007258,1.681758574,2.316436311,1.609437912,0,1.446918983,0,1.354545663,2.618591722,0.374084532,0.292647453,0.169101979,0.024157426,-0.540295917,5.594918316,0.799274045,0.523455625,7.989722222,0.380462963,2.282777778,2.564019422,0.42733657,15.38411653,2.102137974,4.119483043,0.588497578,0.430389904,2.400399559,0.342914223,3.963351092,8.238966087,1.176995155,3.346584212,2.935808684,2.621413019,2.328341703,3.846629402,4.257734494,5.383121673,2.490590677,0.355798668,0.277411651,0.067967869,0.009709696,-0.817387444,5.593895954,0.799127993,0.523400069,56,2.666666667,16,11.15,0.407912148,0.067985358,2.447472888,4.844187086,16.6253823,2.375054615,0.854540149,16.6253823,2.375054615,26.72321698,33.2507646,4.750109229,8.945071894,16.62538247,5.973809612,8.168769824,11.3726629,13.96806081,16.91462223,2.341896018,0.334556574,0.258697326,0,0,0,5.721964274,0.817423468,0.530281599,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,45.5,1.625,12.92857143,14.31379731,0.510049463,0.085008244,3.060296776,4.468777561,26.55549206,13.52774603,1.932535147,0.791857809,13.52774603,1.932535147,21.35801569,26.91263492,3.844662131,7.855581014,13.5277505,0.405465108,5.540773229,7.587532225,10.52702358,12.95613961,15.66544984,2.315080935,0.330725848,0.255196325,0,0,0,5.731433328,0.81877619,0.530784271,45.5252,1.6259,12.93594286,14.30424641,0.509742772,0.084957129,3.058456633,4.469760723,26.5715211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compounds,C5H12O2,77-76-9,6495,PubChem,,16.4,104.17,5.482631579,9.5904,18.9562,10.4774,21.91,0.504757895,0.997694737,0.551442105,1.153157895,0.285714286,19,7,4,18,6,0,6,2,0.111111111,0,0,0,12,5,0,2,0,0,0,0,0,0,0,0,2,0,63.15789474,26.31578947,0,10.52631579,0,5,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28,92,115.4710744,35.30669627,122.7,98.03201296,28,68,77.09090909,33.31557036,106.12,78.901568,5.25,4.583333333,1.75,0.916666667,3,8,2.828427125,2.772588722,1.333333333,1.485994289,0.600561204,16,2,1.112372436,6,17.55030825,2.267786838,4.393619129,1,22,3.142857143,0.489795918,2.204081633,8,32,8,1.378783493,4,2.095238095,4,2.095238095,162,290,98,258,6.544661395,34,44,6.922077922,2.286087597,2.597516519,2.260639497,0.576190476,0.302380952,0.035714286,0,1.666666667,1.364583333,5.458333333,7.018462259,16.25,2.321428571,4.791899283,2.977022898,0.061929799,-0.043010403,0.138800533,0.011777696,7.821428571,2.552084187,0.835548531,0.000817548,-0.111074878,0.253725,0.000297767,21,1.378783493,1.945910149,3.36729583,4.043051268,4.844187086,5.549076085,6.354370041,7.063903961,7.870547845,8.580918882,9.387900612,2.564949357,0,3.80666249,0,5.262690189,0,6.767343125,0,8.282230063,1.945910149,2.197224577,1.945910149,0.693147181,0,0,0,0,0,0,1.945910149,2.197224577,1.945910149,0.693147181,0,0,0,0,0,0,10.00378527,3.36729583,3.36729583,1,0,2.598436492,2.156849666,5.914213562,3.121320344,2.871320344,1.914213562,0.25,0,0.844887652,0.520220057,0.358915043,0.319035594,0.25,0,5.316496581,2.224744871,1.808078205,0.983163248,0.083333333,0,0.759499512,0.370790812,0.226009776,0.163860541,0.083333333,0,5.914213562,3.121320344,2.871320344,1.914213562,0.25,0,20.8492424,1.575449285,23.20776119,2.141328865,2.80610497,1.685146429,1.894841708,80.71062276,24.08143227,1.267443804,1.772338851,4.265583323,1.950212065,2.773989252,37.21911587,187.6856662,1.378783493,2.584962501,4,0.571428571,13.65148445,1.857776861,1.250358386,14.44425022,1.073698468,1.347900316,4.095921172,1.267443804,1.667951197,2.299530145,2.299530145,2.075955012,1.392180799,24.08143227,31.69107275,43.69107275,43.69107275,39.44314523,26.45143518,0.298367569,0.392650579,0.541329893,0.541329893,0.488698314,0.327731769,2.98048371,2.579976316,1.948397369,1.948397369,2.171972501,2.855746715,0.303948825,0.399995491,0.551455996,0.551455996,0.497839892,0.333862311,18.72792206,3.797932652,0.542561807,0.405683081,2.135779205,0.305111315,4.27155841,7.595865304,1.085123615,2.833213344,2.780225452,2.429858132,0.34712259,0.269906642,0.377377163,0.053911023,-0.296257069,5.537520834,0.791074405,0.520320761,44,2.095238095,12.57142857,12.25,0.560072524,0.093345421,3.360435143,4.343805422,13.06981118,1.867115882,0.781388519,13.06981118,1.867115882,18.30587915,26.13962235,3.734231764,8.638702609,13.0698166,5.379897354,7.621195163,10.31164902,12.83989701,15.4262662,1.946497979,0.27807114,0.20247777,0,0,0,5.80804425,0.829720607,0.534820942,44,-5.891317487,1.496019422,0,12,1.714285714,0.755426872,5.164247938,0.737749705,4.782281927,9.733118453,1.390445493,5.771441123,5.327435308,3.713572067,5.129898715,6.665683718,8.256607345,9.873801242,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.891805812,12.48528137,5.960502738,0.993417123,35.76301643,1.234209097,2.207106781,0.315300969,0.240676342,1,0.142857143,2,4.414213562,0.630601937,1.558144618,2.288749508,1.504077397,0,1.287854288,0,1.188224447,2.548547388,0.364078198,0.284404899,0.239146312,0.034163759,-0.434935419,5.542451738,0.79177882,0.520591344,8.729166667,0.415674603,2.494047619,2.150389306,0.358398218,12.90233584,2.157972356,3.84667799,0.549525427,0.409560083,2.76515393,0.39502199,4.507402781,7.693355981,1.099050854,3.075489687,3.097117636,2.650135783,2.747408161,4.257378522,4.978206213,6.169089535,2.362463228,0.337494747,0.26135554,0.269137311,0.038448187,-0.399018263,5.542730567,0.791818652,0.520606638,44,2.095238095,12.57142857,12.25,0.560072524,0.093345421,3.360435143,4.343805422,13.06981118,1.867115882,0.781388519,13.06981118,1.867115882,18.30587915,26.13962235,3.734231764,8.638702609,13.0698166,5.379897354,7.621195163,10.31164902,12.83989701,15.4262662,1.946497979,0.27807114,0.20247777,0,0,0,5.80804425,0.829720607,0.534820942,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,36.5,1.303571429,10.35714286,15.44126984,0.681375961,0.11356266,4.088255768,4.007333185,20.97584908,10.73792454,1.53398922,0.721644243,10.73792454,1.53398922,14.59948004,21.33299194,3.047570277,7.524746719,10.73799053,0.405465108,4.968944867,7.049417588,9.517117675,11.86158979,14.24516135,1.930688427,0.275812632,0.199998535,0,0,0,5.813731848,0.830533121,0.535118498,36.518,1.304214286,10.36245714,15.43167983,0.681020103,0.113503351,4.08612062,4.008194868,20.98812135,10.74346067,1.534780096,0.721800939,10.74346067,1.534780096,14.6083039,21.34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compounds,C5H12O4,1850-14-2,74613,PubChem,,14.8,136.17,6.484285714,11.02,21.6108,11.3864,24.3288,0.524761905,1.029085714,0.542209524,1.158514286,0.222222222,21,9,4,20,8,0,8,4,0.2,0,0,0,12,5,0,4,0,0,0,0,0,0,0,0,4,0,57.14285714,23.80952381,0,19.04761905,0,5,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36,164,210.9421488,51.49637029,220.2,173.2199962,40,120,138.1818182,53.2889259,208,138.427136,6.25,4.916666667,2.5,0.833333333,3,10,3.16227766,4.158883083,1.44,1.587401052,0.49035617,22,2,0.918558654,12,26.52997535,2.645751311,5.708893809,1,30,3.333333333,0.592592593,3.950617284,12,68,12,1.392147224,4,2.444444444,4,2.444444444,320,672,216,824,8.760253966,48,88,8.844155844,3.791656906,1.909772188,3.726000509,0.544444444,0.4,0.133333333,0,2.583333333,1.21875,9.75,7.269222193,23.25,2.583333333,5.860944251,3.424223667,0.018089019,-0.015638901,0.050982707,0.001465168,8.083333333,3.260991176,1.088438073,9.7766E-05,-0.036065955,0.086062034,1.64376E-05,33,1.392147224,2.197224577,3.610917913,4.394449155,5.198497031,5.993961427,6.803505258,7.601402335,8.412054873,9.210440367,10.02131503,2.833213344,0,4.043051268,0,5.549076085,0,7.136483209,0,8.741456116,2.197224577,2.397895273,2.564949357,1.945910149,0,0,0,0,0,0,2.197224577,2.397895273,2.564949357,1.945910149,0,0,0,0,0,0,10.61186811,3.828641396,3.828641396,1,0,2.858095371,2.353691279,7.328427125,4.242640687,2.914213562,3,1.5,0,0.814269681,0.530330086,0.291421356,0.25,0.25,0,6.132993162,2.449489743,1.316496581,1,0.5,0,0.681443685,0.306186218,0.131649658,0.083333333,0.083333333,0,7.328427125,4.242640687,2.914213562,3,1.5,0,29.69848481,1.81575308,36.08166823,2.282657731,3.675765226,1.860521019,2.087629562,92.23866588,29.6094754,1.409975019,1.954685947,5.038310596,1.392147224,3.134866714,70.36869409,443.3713324,1.392147224,3,3,0.333333333,12.52932501,1.934391668,1.36185921,22.03791425,0.998106356,1.316787107,3.633506249,1.409975019,1.58186266,1.58186266,1.58186266,1.372704688,0.917025179,29.6094754,33.21911587,33.21911587,33.21911587,28.82679845,19.25752876,0.321009363,0.360143065,0.360143065,0.360143065,0.312524018,0.208779351,2.982342404,2.810454762,2.810454762,2.810454762,3.019612735,3.475292244,0.3262375,0.366008556,0.366008556,0.366008556,0.317613958,0.212179647,33.9411255,5.236067977,0.581785331,0.647104749,2.236067977,0.248451997,4.472135955,10.47213595,1.163570662,3.891820298,3.03118777,2.679124626,0.297680514,0.385193625,0.149302498,0.016589166,-0.743339633,7.508764405,0.834307156,0.78801163,88,2.444444444,19.55555556,18.5,0.478085525,0.059760691,3.824684203,5.141663557,20.39230485,2.265811649,1.178519683,20.39230485,2.265811649,25.62837282,40.78460969,4.531623299,11.5881628,20.39230485,6.224558429,8.992308733,12.07368917,15.07242518,18.09180596,0,0,0,0,0,0,0,0,0,88,-9.002843951,1.163570662,0,16,1.777777778,1.083707984,5.302775638,0.589197293,4.920809626,12.09153299,1.343503665,7.661997559,5.536838644,3.970291914,5.342334252,6.84694314,8.428799041,10.05298456,3,0.333333333,0.429409129,3,0.333333333,0.429409129,7.589466384,0.843274043,0.792190118,0.942809042,16.97056275,7.884788477,0.98559856,63.07830782,1.475065102,3.121320344,0.346813372,0.444904509,1,0.111111111,2,6.242640687,0.693626743,2.047692843,2.537634471,1.791759469,0,1.504077397,0,1.32175584,2.914213562,0.323801507,0.418069238,0.085786438,0.009531826,-0.95992323,7.52147884,0.835719871,0.788672914,12.20833333,0.33912037,2.712962963,2.730574348,0.341321793,21.84459478,2.442560881,5.264757106,0.584973012,0.649240506,3.052049914,0.339116657,4.851801288,10.52951421,1.169946024,4.055645836,3.413660393,2.922794379,3.058672431,4.63284684,5.49619853,6.742582799,2.606484411,0.289609379,0.374449619,0.111517353,0.012390817,-0.857391792,7.513587222,0.834843025,0.788262599,88,2.444444444,19.55555556,18.5,0.478085525,0.059760691,3.824684203,5.141663557,20.39230485,2.265811649,1.178519683,20.39230485,2.265811649,25.62837282,40.78460969,4.531623299,11.5881628,20.39230485,6.224558429,8.992308733,12.07368917,15.07242518,18.09180596,0,0,0,0,0,0,0,0,0,36,1,8,36,1,0.125,8,3.610917913,8,0.888888889,0.812780988,8,0.888888889,9,16,1.777777778,7.492760301,8.001321867,4.290459441,6.224558429,8.319961022,10.39699406,12.47668358,0,0,0,0,0,0,0,0,0,67,1.488888889,14.77777778,25.66666667,0.631288311,0.078911039,5.050306488,4.658710953,29.75685071,15.37842535,1.708713928,1.068220682,15.37842535,1.708713928,19.23998085,30.53462848,3.392736498,9.466529359,15.37842622,0.693147181,5.651611602,8.149637841,10.94380981,13.66182289,16.39854589,0,0,0,0,0,0,0,0,0,67.0504,1.490008889,14.78924444,25.64454911,0.630803078,0.078850385,5.046424625,4.660018591,29.78331179,15.3904559,1.710050655,1.068526336,15.3904559,1.710050655,19.25529912,30.5592229,3.395469211,9.472311748,15.39045676,0.69194646,5.653199745,8.151972117,10.94694105,13.66573181,16.40323816,0,0,0,0,0,0,0,0,0,121.516,2.700355556,27.18088889,11.62773124,0.344636918,0.043079615,2.757095341,5.732317219,58.39000457,28.39700229,3.155222476,1.307945247,28.39700229,3.15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compounds,C4H10O2,534-15-6,10795,PubChem,,14.2,90.14,5.63375,8.0636,16.0726,8.716,18.4948,0.503975,1.0045375,0.54475,1.155925,0.333333333,16,6,3,15,5,0,5,2,0.133333333,0,0,0,10,4,0,2,0,0,0,0,0,0,0,0,2,0,62.5,25,0,12.5,0,4,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,84,107.4710744,25.97780368,107.22,88.749096,19,51,58.27272727,23.65112406,81.11,59.85696,4.333333333,3.666666667,1.666666667,0.777777778,1,5,2.236067977,2.48490665,1.384615385,1.513085749,0.634373395,14,1,1.119150823,4,13.86815329,2.265686062,3.483798383,1,19,3.166666667,0.555555556,2,7,20,6,1.459147917,4,2.066666667,4,2.066666667,113,217,69,205,5.613960566,29,31,5.922077922,3.125244149,2.922077922,3.084656563,0.511111111,0.280952381,0.047619048,0,1.398148148,1.177083333,4.708333333,3.332801014,14.33333333,2.388888889,4.056390715,2.294121481,0.083864727,0.076254273,-0.242655192,0.020603983,7.888888889,2.175445118,0.662501918,0.002188062,0.191363972,-0.429452374,0.001037193,14,1.459147917,1.791759469,3.044522438,3.663561646,4.317488114,4.96284463,5.624017506,6.274762021,6.938284484,7.590346946,8.254528882,2.397895273,0,3.433987204,0,4.672828834,0,5.96870756,0,7.280008253,1.791759469,1.791759469,1.609437912,0.693147181,0,0,0,0,0,0,1.791759469,1.791759469,1.609437912,0.693147181,0,0,0,0,0,0,8.980172206,3.091042453,3.091042453,1,0,2.457522674,2.031359649,4.991563832,2.808060412,1.921668296,1.39384685,0.288675135,0,0.831927305,0.561612082,0.384333659,0.348461713,0.288675135,0,4.39384685,1.865251371,1.039034086,0.663854611,0.096225045,0,0.732307808,0.373050274,0.207806817,0.165963653,0.096225045,0,4.991563832,2.808060412,1.921668296,1.39384685,0.288675135,0,19.07907262,1.558573039,16.24541588,1.777533865,2.4864189,1.42920136,1.614682216,64,20.78071905,1.298794941,1.825605199,3.760017278,1.918295834,2.55136865,27.38407799,116.5605356,1.459147917,2.446439345,4,0.666666667,11.509775,1.952882292,1.16584986,11.29895826,0.954772093,1.244055344,3.135157771,1.298794941,1.673794941,2.483458593,2.483458593,2.233458593,1.358458593,20.78071905,26.78071905,39.73533749,39.73533749,35.73533749,21.73533749,0.324698735,0.418448735,0.620864648,0.620864648,0.558364648,0.339614648,2.701205059,2.326205059,1.516541407,1.516541407,1.766541407,2.641541407,0.332436988,0.428421247,0.635661156,0.635661156,0.57167165,0.347708378,14.04030206,3.449489743,0.574914957,0.322652915,1.931851653,0.321975275,3.863703305,6.898979486,1.149829914,2.564949357,2.595799778,2.300795291,0.383465882,0.217126788,0.125467544,0.020911257,-0.540881162,4.585015974,0.764169329,0.396804512,31,2.066666667,10.33333333,9.083333333,0.550836957,0.110167391,2.754184786,4.007333185,10.74240473,1.790400788,0.618660906,10.74240473,1.790400788,15.97847271,21.48480946,3.580801576,7.28276118,10.74245678,5.043425117,6.974478911,9.557257866,11.84151673,14.2589257,1.946497979,0.32441633,0.173552374,0,0,0,4.80804425,0.801340708,0.409181074,31,-4.909237255,1.745355992,0,10,1.666666667,0.6,4.302775638,0.717129273,3.920809626,7.841619253,1.306936542,4.912654886,4.609916671,3.433987204,4.672828834,6.008813185,7.396948603,8.814776089,2.449489743,0.40824829,0.233445375,2.449489743,0.40824829,0.233445375,4.629100499,0.77151675,0.399297966,0.936020137,9.459457418,4.97084553,0.994169106,24.85422765,1.174759276,2.115355072,0.352559179,0.195229966,1,0.166666667,2,4.230710143,0.705118357,1.504077397,2.172059387,1.466337069,0,1.268511325,0,1.181499948,2.390833047,0.398472174,0.22712955,0.030476867,0.005079478,-0.909617804,4.587721209,0.764620201,0.396958211,6.756944444,0.450462963,2.252314815,2.067972932,0.413594586,10.33986466,1.954638617,3.370497738,0.561749623,0.316616424,2.434614161,0.405769027,4.056377733,6.740995476,1.123499246,2.764662539,2.819372086,2.462284175,2.310108802,3.802264817,4.305323589,5.43398345,2.25952424,0.376587373,0.212410203,0.09494586,0.01582431,-0.613514381,4.588128707,0.764688118,0.396981355,31,2.066666667,10.33333333,9.083333333,0.550836957,0.110167391,2.754184786,4.007333185,10.74240473,1.790400788,0.618660906,10.74240473,1.790400788,15.97847271,21.48480946,3.580801576,7.28276118,10.74245678,5.043425117,6.974478911,9.557257866,11.84151673,14.2589257,1.946497979,0.32441633,0.173552374,0,0,0,4.80804425,0.801340708,0.409181074,15,1,5,15,1,0.2,5,2.772588722,5,0.833333333,0.419382003,5,0.833333333,6,10,1.666666667,4.875197323,5.018950998,3.433987204,4.795790546,6.447305863,8.045908742,9.657011401,0,0,0,0,0,0,0,0,0,25,1.19047619,8.25,11.9984127,0.689954014,0.137990803,3.449770068,3.622672876,16.61577351,8.557886757,1.42631446,0.559419921,8.557886757,1.42631446,12.41944226,16.94910685,2.824851141,6.146463082,8.558442195,0.405465108,4.570837507,6.316769753,8.635099831,10.71332746,12.89010543,1.930688427,0.321781404,0.171427316,0,0,0,4.813731848,0.802288641,0.409489136,25.0144,1.191161905,8.255,11.98959821,0.689534792,0.137906958,3.447673962,3.623674342,16.62739473,8.563097367,1.427182894,0.559578529,8.563097367,1.427182894,12.4279406,16.95992807,2.826654678,6.149521172,8.5636496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+UMLYSI0441,L,ethyl (E)-2-methylbut-2-enoate,CCOC(=O)/C(=C/C)/C,unsaturated 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amine,C4H11N,75-64-9,6385,PubChem,,21.1,73.16,4.5725,7.6554,15.5198,8.8127,18.5743,0.4784625,0.9699875,0.55079375,1.16089375,0.4,16,5,4,15,4,0,4,0,0,0,0,0,11,4,1,0,0,0,0,0,0,0,0,0,1,0,68.75,25,6.25,0,0,4,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,28,29.31223963,21.35995469,38.6,33.44240009,16,24,24.84507042,16.66611157,34.96,30.40228,4.25,3.583333333,1,0.833333333,3,6,2.449489743,1.386294361,1.176470588,1.319507911,0.8493218,10.5,2,1.341506351,0,9.169934957,1.673320053,2.884053773,1,9,1.8,0.32,0.96,4,12,3,0.721928095,2,1.6,2,1.6,60,82,28,48,3.972356867,12,16,4.961038961,0.977357471,3.961038961,0.969741699,0.6,0,0,0,1.25,1.354166667,2.708333333,4.481741253,11.25,2.25,3.515747535,2.344580192,0.146792719,-0.116049127,0.324982901,0.074489542,7.75,1.827921234,0.597610051,0.006325243,-0.316253916,0.655083456,0.005296794,17,0.721928095,1.609437912,3.044522438,3.496507561,4.394449155,4.859812404,5.771441123,6.240275845,7.155396302,7.625107148,8.541105011,2.197224577,0,3.496507561,0,4.859812404,0,6.240275845,0,7.625107148,1.609437912,1.945910149,0,0,0,0,0,0,0,0,1.609437912,1.945910149,0,0,0,0,0,0,0,0,9.164296433,2.772588722,2.772588722,1,0,2.251291799,1.941646022,4.5,2,3,0,0,0,0.9,0.5,0.5,0,0,0,4.077350269,1.788675135,2.366025404,0,0,0,0.815470054,0.447168784,0.394337567,0,0,0,4.5,2,3,0,0,0,12.25,1.264911064,12.64911064,1.779017701,1.959624428,1.435026478,1.538836749,64,17.94625219,1.121640762,0.970950594,3.25,0.721928095,2.293564443,9.709505945,52,0.721928095,2,3,0.6,6.854752972,1.241146095,1.083984339,8.101474426,1.552537557,1.531034756,0,1.121640762,1.794736718,1.794736718,1.544736718,0.841917187,0,17.94625219,28.71578748,28.71578748,24.71578748,13.47067499,0,0.280410191,0.448684179,0.448684179,0.386184179,0.210479297,0,2.878359238,2.205263282,2.205263282,2.455263282,3.158082813,0,0.287092954,0.459377265,0.459377265,0.395387759,0.21549546,0,8,2,0.4,0.150514998,2,0.4,4,4,0.8,1.791759469,2.444465779,2.121320344,0.424264069,0.163303128,0.707106781,0.141421356,-0.075257499,3.577708764,0.715541753,0.276802492,16,1.6,6.4,7,0.755928946,0.188982237,3.023715784,3.135494216,6.605551275,1.321110255,0.409954534,6.605551275,1.321110255,8.605551275,13.21110255,2.64222051,5.505331536,6.608188235,4.043051268,5.579729826,7.577121931,9.431962767,11.32978357,0,0,0,0,0,0,0,0,0,16,-3.101120416,0.8,0,8,1.6,0.451544993,5,1,4,6.8,1.36,3.891820298,5.066183552,3.36729583,4.859812404,6.444131257,8.048468744,9.656883442,2.236067977,0.447213595,0.174742501,2.236067977,0.447213595,0.174742501,3.651483717,0.730296743,0.281234684,0.8,8,4,1,16,0.916290732,1,0.2,0,1,0.2,2,2,0.4,1.098612289,1.958143765,1.098612289,0,1.098612289,0,1.098612289,2.121320344,0.424264069,0.163303128,0.707106781,0.141421356,-0.075257499,3.577708764,0.715541753,0.276802492,5.5,0.55,2.2,1.511857892,0.377964473,6.047431568,1.781288169,2.409852575,0.481970515,0.190995237,2.409852575,0.481970515,4.069705149,4.819705149,0.96394103,2.33449247,2.685046923,2.277267285,2.339399066,3.745451759,4.243796721,5.383450761,2.046780782,0.409356156,0.155535665,0.507762566,0.101552513,-0.14716966,3.583852385,0.716770477,0.277175057,16,1.6,6.4,7,0.755928946,0.188982237,3.023715784,3.135494216,6.605551275,1.321110255,0.409954534,6.605551275,1.321110255,8.605551275,13.21110255,2.64222051,5.505331536,6.608188235,4.043051268,5.579729826,7.577121931,9.431962767,11.32978357,0,0,0,0,0,0,0,0,0,10,1,4,10,1,0.25,4,2.397895273,4,0.8,0.301029996,4,0.8,5,8,1.6,3.931825633,4.044272764,3.044522438,4.110873864,5.564520407,6.928537818,8.318986125,0,0,0,0,0,0,0,0,0,15.57142857,1.038095238,6.2,7.424908425,0.781959857,0.195489964,3.127839429,3.083593629,12.66410847,6.403482805,1.280696561,0.403208124,6.403482805,1.280696561,8.403482805,12.74982275,2.54996455,5.340085852,6.406821759,0.133531393,3.97375146,5.491284199,7.45160055,9.277051553,11.14325785,0,0,0,0,0,0,0,0,0,15.5716,1.038106667,6.20008,7.424723807,0.781949044,0.195487261,3.127796175,3.083614003,12.66432631,6.403563153,1.280712631,0.403210848,6.403563153,1.280712631,8.403563153,12.75000631,2.550001261,5.340155609,6.406901786,0.133481391,3.973778781,5.491320659,7.451650882,9.277114286,11.14333311,0,0,0,0,0,0,0,0,0,16.9576,1.130506667,6.84688,6.232384673,0.704137384,0.176034346,2.816549534,3.256861992,14.44776271,7.064281355,1.412856271,0.424533994,7.064281355,1.412856271,9.811141375,14.25624271,2.851248542,5.824005159,7.065873904,-0.277025492,4.202520078,5.757489631,7.855742803,9.76270228,11.73479248,1.819539737,0.363907947,0.129980772,0.087221662,0.017444332,-0.529687821,3.911388979,0.782277796,0.296165504,15.5863,1.039086667,6.20694,7.408942501,0.781023033,0.195255758,3.124092131,3.085362308,12.68300905,6.410454526,1.282090905,0.403444412,6.410454526,1.282090905,8.410454526,12.76574905,2.553149811,5.346125554,6.413765763,0.129184458,3.97612295,5.494443975,7.455966481,9.28249143,11.1497849,0,0,0,0,0,0,0,0,0,17.8,1.186666667,7.24,5.678846154,0.664556222,0.166139055,2.658224888,3.36729583,15.54821161,7.474105805,1.494821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amine,C6H15N,13360-63-9,25914,PubChem,,22.1,101.22,4.600909091,10.709,21.287,12.3355,25.4047,0.486772727,0.967590909,0.560704545,1.154759091,0.285714286,22,7,2,21,6,0,6,4,0.19047619,0,0,0,15,6,1,0,0,0,0,0,0,0,0,0,1,0,68.18181818,27.27272727,4.545454545,0,0,6,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,34,36.33287046,23.38768623,46.3,35.9316,20,28,29.12676056,21.16569525,39.96,29.8808,4.5,4.25,2,1.75,0,5,2.236067977,3.465735903,1.555555556,1.640670712,0.537158271,14.5,0,1.560660172,4,19.24902768,3.055050463,3.627465013,1,33,4.714285714,0.897959184,2.857142857,12,28,9,1.950212065,6,2.666666667,6,2.666666667,202,236,146,186,7.297142506,54,56,6.961038961,5.961038961,5.961038961,5.927860637,0.452380952,0.219387755,0.096598639,0.042857143,0.388888889,0.749166667,2.178888889,6.729604658,12.5,1.785714286,5.312655418,3.520829431,0.131506809,-0.030812547,0.116811031,0.023809524,7.285714286,2.602480803,0.836211705,0.000973526,-0.108345305,0.250205155,0.000333268,13,1.950212065,1.945910149,3.135494216,3.713572067,4.317488114,4.919980926,5.533389489,6.142037406,6.758094504,7.368339686,7.985143931,2.564949357,0,3.496507561,0,4.574710979,0,5.720311777,0,6.900730664,1.945910149,1.791759469,1.609437912,1.386294361,1.098612289,0.693147181,0,0,0,0,1.945910149,1.791759469,1.609437912,1.386294361,1.098612289,0.693147181,0,0,0,0,8.761236807,3.36729583,3.36729583,1,0,2.627114062,2.132338507,5.535533906,3.414213562,2.060660172,1.207106781,0.676776695,0.353553391,0.790790558,0.569035594,0.412132034,0.301776695,0.225592232,0.176776695,5.328427125,3.121320344,1.707106781,0.957106781,0.478553391,0.25,0.761203875,0.520220057,0.341421356,0.239276695,0.159517797,0.125,5.535533906,3.414213562,2.060660172,1.207106781,0.676776695,0.353553391,20.98528137,1.840004522,19.78207923,3.097664558,3.327694298,2.602395727,2.952807591,98.10749561,23.99436167,1.090652803,2.398302995,4.168986958,1.950212065,2.774244972,50.3643629,233.4632697,0.863120569,2.751629167,7,1,19.65148445,2.440007983,1.22222776,15.01828953,0.666081376,1.019498601,1.729713704,1.090652803,1.763842123,3.027169118,3.663532755,3.663532755,3.460831318,23.99436167,38.8045267,66.59772061,80.59772061,80.59772061,76.13828899,0.244572155,0.395530703,0.67882398,0.821524595,0.821524595,0.77607005,3.368778815,2.695589496,1.4322625,0.795898864,0.795898864,0.998600301,0.248309195,0.401574375,0.689196346,0.834077413,0.834077413,0.787928327,20.48528137,4.027339492,0.575334213,0.423512769,1.847759065,0.263965581,3.69551813,8.054678984,1.150668426,3.091042453,2.73919265,2.513669746,0.359095678,0.280215753,0.099456184,0.014208026,-0.701657747,5.592530245,0.798932892,0.523325839,56,2.666666667,16,11.15,0.407912148,0.067985358,2.447472888,4.844187086,16.6253823,2.375054615,0.854540149,16.6253823,2.375054615,26.72321698,33.2507646,4.750109229,8.945071894,16.62538247,5.973809612,8.168769824,11.3726629,13.96806081,16.91462223,2.341896018,0.334556574,0.258697326,0,0,0,5.721964274,0.817423468,0.530281599,56,-7.498040439,2.885095623,0,12,1.714285714,0.755426872,3.801937736,0.543133962,3.603875472,8.702204129,1.243172018,5.934894196,4.522970604,3.555348061,4.691347882,5.894402834,7.133295955,8.394121194,2.645751311,0.377964473,0.295784314,2.645751311,0.377964473,0.295784314,5.61248608,0.801783726,0.524408694,0.975489589,10.82842712,5.985143843,0.997523974,35.91086306,1.310251729,2.366025404,0.338003629,0.261813582,1,0.142857143,2,4.732050808,0.676007258,1.681758574,2.316436311,1.609437912,0,1.446918983,0,1.354545663,2.618591722,0.374084532,0.292647453,0.169101979,0.024157426,-0.540295917,5.594918316,0.799274045,0.523455625,7.989722222,0.380462963,2.282777778,2.564019422,0.42733657,15.38411653,2.102137974,4.119483043,0.588497578,0.430389904,2.400399559,0.342914223,3.963351092,8.238966087,1.176995155,3.346584212,2.935808684,2.621413019,2.328341703,3.846629402,4.257734494,5.383121673,2.490590677,0.355798668,0.277411651,0.067967869,0.009709696,-0.817387444,5.593895954,0.799127993,0.523400069,56,2.666666667,16,11.15,0.407912148,0.067985358,2.447472888,4.844187086,16.6253823,2.375054615,0.854540149,16.6253823,2.375054615,26.72321698,33.2507646,4.750109229,8.945071894,16.62538247,5.973809612,8.168769824,11.3726629,13.96806081,16.91462223,2.341896018,0.334556574,0.258697326,0,0,0,5.721964274,0.817423468,0.530281599,21,1,6,21,1,0.166666667,6,3.091042453,6,0.857142857,0.544705875,6,0.857142857,7,12,1.714285714,5.777652323,6.007918609,3.761200116,5.351858133,7.172424577,8.958154135,10.75070684,0,0,0,0,0,0,0,0,0,53,1.892857143,15.12244898,11.95358555,0.432700019,0.07211667,2.596200114,4.744044423,31.33744926,15.7401532,2.248593314,0.837906269,15.7401532,2.248593314,25.20200528,31.43949008,4.491355725,8.651145924,15.74015364,0.133531393,5.859564476,8.013356692,11.14898088,13.69900254,16.58345192,2.370603005,0.338657572,0.262401181,0.035061232,0.005008747,-1.018620979,5.716223251,0.816603322,0.529976427,53.0012,1.8929,15.1228,11.95322862,0.432689477,0.072114913,2.59613686,4.744085169,31.3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By,Notes,TARGET,nAcid,ALogP,ALogp2,AMR,apol,naAromAtom,nAromBond,nAtom,nHeavyAtom,nH,nB,nC,nN,nO,nS,nP,nF,nCl,nBr,nI,nX,ATS0m,ATS1m,ATS2m,ATS3m,ATS4m,ATS5m,ATS6m,ATS7m,ATS8m,ATS0v,ATS1v,ATS2v,ATS3v,ATS4v,ATS5v,ATS6v,ATS7v,ATS8v,ATS0e,ATS1e,ATS2e,ATS3e,ATS4e,ATS5e,ATS6e,ATS7e,ATS8e,ATS0p,ATS1p,ATS2p,ATS3p,ATS4p,ATS5p,ATS6p,ATS7p,ATS8p,ATS0i,ATS1i,ATS2i,ATS3i,ATS4i,ATS5i,ATS6i,ATS7i,ATS8i,ATS0s,ATS1s,ATS2s,ATS3s,ATS4s,ATS5s,ATS6s,ATS7s,ATS8s,AATS0m,AATS1m,AATS2m,AATS3m,AATS4m,AATS5m,AATS6m,AATS7m,AATS8m,AATS0v,AATS1v,AATS2v,AATS3v,AATS4v,AATS5v,AATS6v,AATS7v,AATS8v,AATS0e,AATS1e,AATS2e,AATS3e,AATS4e,AATS5e,AATS6e,AATS7e,AATS8e,AATS0p,AATS1p,AATS2p,AATS3p,AATS4p,AATS5p,AATS6p,AATS7p,AATS8p,AATS0i,AATS1i,AATS2i,AATS3i,AATS4i,AATS5i,AATS6i,AATS7i,AATS8i,AATS0s,AATS1s,AATS2s,AATS3s,AATS4s,AATS5s,AATS6s,AATS7s,AATS8s,ATSC0c,ATSC1c,ATSC2c,ATSC3c,ATSC4c,ATSC5c,ATSC6c,ATSC7c,ATSC8c,ATSC0m,ATSC1m,ATSC2m,ATSC3m,ATSC4m,ATSC5m,ATSC6m,ATSC7m,ATSC8m,ATSC0v,ATSC1v,ATSC2v,ATSC3v,ATSC4v,ATSC5v,ATSC6v,ATSC7v,ATSC8v,ATSC0e,ATSC1e,ATSC2e,ATSC3e,ATSC4e,ATSC5e,ATSC6e,ATSC7e,ATSC8e,ATSC0p,ATSC1p,ATSC2p,ATSC3p,ATSC4p,ATSC5p,ATSC6p,ATSC7p,ATSC8p,ATSC0i,ATSC1i,ATSC2i,ATSC3i,ATSC4i,ATSC5i,ATSC6i,ATSC7i,ATSC8i,ATSC0s,ATSC1s,ATSC2s,ATSC3s,ATSC4s,ATSC5s,ATSC6s,ATSC7s,ATSC8s,AATSC0c,AATSC1c,AATSC2c,AATSC3c,AATSC4c,AATSC5c,AATSC6c,AATSC7c,AATSC8c,AATSC0m,AATSC1m,AATSC2m,AATSC3m,AATSC4m,AATSC5m,AATSC6m,AATSC7m,AATSC8m,AATSC0v,AATSC1v,AATSC2v,AATSC3v,AATSC4v,AATSC5v,AATSC6v,AATSC7v,AATSC8v,AATSC0e,AATSC1e,AATSC2e,AATSC3e,AATSC4e,AATSC5e,AATSC6e,AATSC7e,AATSC8e,AATSC0p,AATSC1p,AATSC2p,AATSC3p,AATSC4p,AATSC5p,AATSC6p,AATSC7p,AATSC8p,AATSC0i,AATSC1i,AATSC2i,AATSC3i,AATSC4i,AATSC5i,AATSC6i,AATSC7i,AATSC8i,AATSC0s,AATSC1s,AATSC2s,AATSC3s,AATSC4s,AATSC5s,AATSC6s,AATSC7s,AATSC8s,MATS1c,MATS2c,MATS3c,MATS4c,MATS5c,MATS6c,MATS7c,MATS8c,MATS1m,MATS2m,MATS3m,MATS4m,MATS5m,MATS6m,MATS7m,MATS8m,MATS1v,MATS2v,MATS3v,MATS4v,MATS5v,MATS6v,MATS7v,MATS8v,MATS1e,MATS2e,MATS3e,MATS4e,MATS5e,MATS6e,MATS7e,MATS8e,MATS1p,MATS2p,MATS3p,MATS4p,MATS5p,MATS6p,MATS7p,MATS8p,MATS1i,MATS2i,MATS3i,MATS4i,MATS5i,MATS6i,MATS7i,MATS8i,MATS1s,MATS2s,MATS3s,MATS4s,MATS5s,MATS6s,MATS7s,MATS8s,GATS1c,GATS2c,GATS3c,GATS4c,GATS5c,GATS6c,GATS7c,GATS8c,GATS1m,GATS2m,GATS3m,GATS4m,GATS5m,GATS6m,GATS7m,GATS8m,GATS1v,GATS2v,GATS3v,GATS4v,GATS5v,GATS6v,GATS7v,GATS8v,GATS1e,GATS2e,GATS3e,GATS4e,GATS5e,GATS6e,GATS7e,GATS8e,GATS1p,GATS2p,GATS3p,GATS4p,GATS5p,GATS6p,GATS7p,GATS8p,GATS1i,GATS2i,GATS3i,GATS4i,GATS5i,GATS6i,GATS7i,GATS8i,GATS1s,GATS2s,GATS3s,GATS4s,GATS5s,GATS6s,GATS7s,GATS8s,SpAbs_DzZ,SpMax_DzZ,SpDiam_DzZ,SpAD_DzZ,SpMAD_DzZ,EE_DzZ,SM1_DzZ,VE1_DzZ,VE2_DzZ,VE3_DzZ,VR1_DzZ,VR2_DzZ,VR3_DzZ,SpAbs_Dzm,SpMax_Dzm,SpDiam_Dzm,SpAD_Dzm,SpMAD_Dzm,EE_Dzm,SM1_Dzm,VE1_Dzm,VE2_Dzm,VE3_Dzm,VR1_Dzm,VR2_Dzm,VR3_Dzm,SpAbs_Dzv,SpMax_Dzv,SpDiam_Dzv,SpAD_Dzv,SpMAD_Dzv,EE_Dzv,SM1_Dzv,VE1_Dzv,VE2_Dzv,VE3_Dzv,VR1_Dzv,VR2_Dzv,VR3_Dzv,SpAbs_Dze,SpMax_Dze,SpDiam_Dze,SpAD_Dze,SpMAD_Dze,EE_Dze,SM1_Dze,VE1_Dze,VE2_Dze,VE3_Dze,VR1_Dze,VR2_Dze,VR3_Dze,SpAbs_Dzp,SpMax_Dzp,SpDiam_Dzp,SpAD_Dzp,SpMAD_Dzp,EE_Dzp,SM1_Dzp,VE1_Dzp,VE2_Dzp,VE3_Dzp,VR1_Dzp,VR2_Dzp,VR3_Dzp,SpAbs_Dzi,SpMax_Dzi,SpDiam_Dzi,SpAD_Dzi,SpMAD_Dzi,EE_Dzi,SM1_Dzi,VE1_Dzi,VE2_Dzi,VE3_Dzi,VR1_Dzi,VR2_Dzi,VR3_Dzi,SpAbs_Dzs,SpMax_Dzs,SpDiam_Dzs,SpAD_Dzs,SpMAD_Dzs,EE_Dzs,SM1_Dzs,VE1_Dzs,VE2_Dzs,VE3_Dzs,VR1_Dzs,VR2_Dzs,VR3_Dzs,nBase,BCUTw-1l,BCUTw-1h,BCUTc-1l,BCUTc-1h,BCUTp-1l,BCUTp-1h,nBonds,nBonds2,nBondsS,nBondsS2,nBondsS3,nBondsD,nBondsD2,nBondsT,nBondsQ,nBondsM,bpol,SpMax1_Bhm,SpMax2_Bhm,SpMax3_Bhm,SpMax4_Bhm,SpMax5_Bhm,SpMax6_Bhm,SpMax7_Bhm,SpMax8_Bhm,SpMin1_Bhm,SpMin2_Bhm,SpMin3_Bhm,SpMin4_Bhm,SpMin5_Bhm,SpMin6_Bhm,SpMin7_Bhm,SpMin8_Bhm,SpMax1_Bhv,SpMax2_Bhv,SpMax3_Bhv,SpMax4_Bhv,SpMax5_Bhv,SpMax6_Bhv,SpMax7_Bhv,SpMax8_Bhv,SpMin1_Bhv,SpMin2_Bhv,SpMin3_Bhv,SpMin4_Bhv,SpMin5_Bhv,SpMin6_Bhv,SpMin7_Bhv,SpMin8_Bhv,SpMax1_Bhe,SpMax2_Bhe,SpMax3_Bhe,SpMax4_Bhe,SpMax5_Bhe,SpMax6_Bhe,SpMax7_Bhe,SpMax8_Bhe,SpMin1_Bhe,SpMin2_Bhe,SpMin3_Bhe,SpMin4_Bhe,SpMin5_Bhe,SpMin6_Bhe,SpMin7_Bhe,SpMin8_Bhe,SpMax1_Bhp,SpMax2_Bhp,SpMax3_Bhp,SpMax4_Bhp,SpMax5_Bhp,SpMax6_Bhp,SpMax7_Bhp,SpMax8_Bhp,SpMin1_Bhp,SpMin2_Bhp,SpMin3_Bhp,SpMin4_Bhp,SpMin5_Bhp,SpMin6_Bhp,SpMin7_Bhp,SpMin8_Bhp,SpMax1_Bhi,SpMax2_Bhi,SpMax3_Bhi,SpMax4_Bhi,SpMax5_Bhi,SpMax6_Bhi,SpMax7_Bhi,SpMax8_Bhi,SpMin1_Bhi,SpMin2_Bhi,SpMin3_Bhi,SpMin4_Bhi,SpMin5_Bhi,SpMin6_Bhi,SpMin7_Bhi,SpMin8_Bhi,SpMax1_Bhs,SpMax2_Bhs,SpMax3_Bhs,SpMax4_Bhs,SpMax5_Bhs,SpMax6_Bhs,SpMax7_Bhs,SpMax8_Bhs,SpMin1_Bhs,SpMin2_Bhs,SpMin3_Bhs,SpMin4_Bhs,SpMin5_Bhs,SpMin6_Bhs,SpMin7_Bhs,SpMin8_Bhs,C1SP1,C2SP1,C1SP2,C2SP2,C3SP2,C1SP3,C2SP3,C3SP3,C4SP3,SCH-3,SCH-4,SCH-5,SCH-6,SCH-7,VCH-3,VCH-4,VCH-5,VCH-6,VCH-7,SC-3,SC-4,SC-5,SC-6,VC-3,VC-4,VC-5,VC-6,SPC-4,SPC-5,SPC-6,VPC-4,VPC-5,VPC-6,SP-0,SP-1,SP-2,SP-3,SP-4,SP-5,SP-6,SP-7,ASP-0,ASP-1,ASP-2,ASP-3,ASP-4,ASP-5,ASP-6,ASP-7,VP-0,VP-1,VP-2,VP-3,VP-4,VP-5,VP-6,VP-7,AVP-0,AVP-1,AVP-2,AVP-3,AVP-4,AVP-5,AVP-6,AVP-7,Sv,Sse,Spe,Sare,Sp,Si,Mv,Mse,Mpe,Mare,Mp,Mi,CrippenLogP,CrippenMR,SpMax_Dt,SpDiam_Dt,SpAD_Dt,SpMAD_Dt,EE_Dt,VE1_Dt,VE2_Dt,VE3_Dt,VR1_Dt,VR2_Dt,VR3_Dt,ECCEN,nHBd,nwHBd,nHBa,nwHBa,nHBint2,nHBint3,nHBint4,nHBint5,nHBint6,nHBint7,nHBint8,nHBint9,nHBint10,nHsOH,nHdNH,nHsSH,nHsNH2,nHssNH,nHaaNH,nHsNH3p,nHssNH2p,nHsssNHp,nHtCH,nHdCH2,nHdsCH,nHaaCH,nHCHnX,nHCsats,nHCsatu,nHAvin,nHother,nHmisc,nsLi,nssBe,nssssBem,nsBH2,nssBH,nsssB,nssssBm,nsCH3,ndCH2,nssCH2,ntCH,ndsCH,naaCH,nsssCH,nddC,ntsC,ndssC,naasC,naaaC,nssssC,nsNH3p,nsNH2,nssNH2p,ndNH,nssNH,naaNH,ntN,nsssNHp,ndsN,naaN,nsssN,nddsN,naasN,nssssNp,nsOH,ndO,nssO,naaO,naOm,nsOm,nsF,nsSiH3,nssSiH2,nsssSiH,nssssSi,nsPH2,nssPH,nsssP,ndsssP,nddsP,nsssssP,nsSH,ndS,nssS,naaS,ndssS,nddssS,nssssssS,nSm,nsCl,nsGeH3,nssGeH2,nsssGeH,nssssGe,nsAsH2,nssAsH,nsssAs,ndsssAs,nddsAs,nsssssAs,nsSeH,ndSe,nssSe,naaSe,ndssSe,nssssssSe,nddssSe,nsBr,nsSnH3,nssSnH2,nsssSnH,nssssSn,nsI,nsPbH3,nssPbH2,nsssPbH,nssssPb,SHBd,SwHBd,SHBa,SwHBa,SHBint2,SHBint3,SHBint4,SHBint5,SHBint6,SHBint7,SHBint8,SHBint9,SHBint10,SHsOH,SHdNH,SHsSH,SHsNH2,SHssNH,SHaaNH,SHsNH3p,SHssNH2p,SHsssNHp,SHtCH,SHdCH2,SHdsCH,SHaaCH,SHCHnX,SHCsats,SHCsatu,SHAvin,SHother,SHmisc,SsLi,SssBe,SssssBem,SsBH2,SssBH,SsssB,SssssBm,SsCH3,SdCH2,SssCH2,StCH,SdsCH,SaaCH,SsssCH,SddC,StsC,SdssC,SaasC,SaaaC,SssssC,SsNH3p,SsNH2,SssNH2p,SdNH,SssNH,SaaNH,StN,SsssNHp,SdsN,SaaN,SsssN,SddsN,SaasN,SssssNp,SsOH,SdO,SssO,SaaO,SaOm,SsOm,SsF,SsSiH3,SssSiH2,SsssSiH,SssssSi,SsPH2,SssPH,SsssP,SdsssP,SddsP,SsssssP,SsSH,SdS,SssS,SaaS,SdssS,SddssS,SssssssS,SSm,SsCl,SsGeH3,SssGeH2,SsssGeH,SssssGe,SsAsH2,SssAsH,SsssAs,SdsssAs,SddsAs,SsssssAs,SsSeH,SdSe,SssSe,SaaSe,SdssSe,SssssssSe,SddssSe,SsBr,SsSnH3,SssSnH2,SsssSnH,SssssSn,SsI,SsPbH3,SssPbH2,SsssPbH,SssssPb,minHBd,minwHBd,minHBa,minwHBa,minHBint2,minHBint3,minHBint4,minHBint5,minHBint6,minHBint7,minHBint8,minHBint9,minHBint10,minHsOH,minHdNH,minHsSH,minHsNH2,minHssNH,minHaaNH,minHsNH3p,minHssNH2p,minHsssNHp,minHtCH,minHdCH2,minHdsCH,minHaaCH,minHCHnX,minHCsats,minHCsatu,minHAvin,minHother,minHmisc,minsLi,minssBe,minssssBem,minsBH2,minssBH,minsssB,minssssBm,minsCH3,mindCH2,minssCH2,mintCH,mindsCH,minaaCH,minsssCH,minddC,mintsC,mindssC,minaasC,minaaaC,minssssC,minsNH3p,minsNH2,minssNH2p,mindNH,minssNH,minaaNH,mintN,minsssNHp,mindsN,minaaN,minsssN,minddsN,minaasN,minssssNp,minsOH,mindO,minssO,minaaO,minaOm,minsOm,minsF,minsSiH3,minssSiH2,minsssSiH,minssssSi,minsPH2,minssPH,minsssP,mindsssP,minddsP,minsssssP,minsSH,mindS,minssS,minaaS,mindssS,minddssS,minssssssS,minSm,minsCl,minsGeH3,minssGeH2,minsssGeH,minssssGe,minsAsH2,minssAsH,minsssAs,mindsssAs,minddsAs,minsssssAs,minsSeH,mindSe,minssSe,minaaSe,mindssSe,minssssssSe,minddssSe,minsBr,minsSnH3,minssSnH2,minsssSnH,minssssSn,minsI,minsPbH3,minssPbH2,minsssPbH,minssssPb,maxHBd,maxwHBd,maxHBa,maxwHBa,maxHBint2,maxHBint3,maxHBint4,maxHBint5,maxHBint6,maxHBint7,maxHBint8,maxHBint9,maxHBint10,maxHsOH,maxHdNH,maxHsSH,maxHsNH2,maxHssNH,maxHaaNH,maxHsNH3p,maxHssNH2p,maxHsssNHp,maxHtCH,maxHdCH2,maxHdsCH,maxHaaCH,maxHCHnX,maxHCsats,maxHCsatu,maxHAvin,maxHother,maxHmisc,maxsLi,maxssBe,maxssssBem,maxsBH2,maxssBH,maxsssB,maxssssBm,maxsCH3,maxdCH2,maxssCH2,maxtCH,maxdsCH,maxaaCH,maxsssCH,maxddC,maxtsC,maxdssC,maxaasC,maxaaaC,maxssssC,maxsNH3p,maxsNH2,maxssNH2p,maxdNH,maxssNH,maxaaNH,maxtN,maxsssNHp,maxdsN,maxaaN,maxsssN,maxddsN,maxaasN,maxssssNp,maxsOH,maxdO,maxssO,maxaaO,maxaOm,maxsOm,maxsF,maxsSiH3,maxssSiH2,maxsssSiH,maxssssSi,maxsPH2,maxssPH,maxsssP,maxdsssP,maxddsP,maxsssssP,maxsSH,maxdS,maxssS,maxaaS,maxdssS,maxddssS,maxssssssS,maxSm,maxsCl,maxsGeH3,maxssGeH2,maxsssGeH,maxssssGe,maxsAsH2,maxssAsH,maxsssAs,maxdsssAs,maxddsAs,maxsssssAs,maxsSeH,maxdSe,maxssSe,maxaaSe,maxdssSe,maxssssssSe,maxddssSe,maxsBr,maxsSnH3,maxssSnH2,maxsssSnH,maxssssSn,maxsI,maxsPbH3,maxssPbH2,maxsssPbH,maxssssPb,sumI,meanI,hmax,gmax,hmin,gmin,LipoaffinityIndex,MAXDN,MAXDP,DELS,MAXDN2,MAXDP2,DELS2,ETA_Alpha,ETA_AlphaP,ETA_dAlpha_A,ETA_dAlpha_B,ETA_Epsilon_1,ETA_Epsilon_2,ETA_Epsilon_3,ETA_Epsilon_4,ETA_Epsilon_5,ETA_dEpsilon_A,ETA_dEpsilon_B,ETA_dEpsilon_C,ETA_dEpsilon_D,ETA_Psi_1,ETA_dPsi_A,ETA_dPsi_B,ETA_Shape_P,ETA_Shape_Y,ETA_Shape_X,ETA_Beta,ETA_BetaP,ETA_Beta_s,ETA_BetaP_s,ETA_Beta_ns,ETA_BetaP_ns,ETA_dBeta,ETA_dBetaP,ETA_Beta_ns_d,ETA_BetaP_ns_d,ETA_Eta,ETA_EtaP,ETA_Eta_R,ETA_Eta_F,ETA_EtaP_F,ETA_Eta_L,ETA_EtaP_L,ETA_Eta_R_L,ETA_Eta_F_L,ETA_EtaP_F_L,ETA_Eta_B,ETA_EtaP_B,ETA_Eta_B_RC,ETA_EtaP_B_RC,FMF,fragC,nHBAcc,nHBAcc2,nHBAcc3,nHBAcc_Lipinski,nHBDon,nHBDon_Lipinski,HybRatio,IC0,IC1,IC2,IC3,IC4,IC5,TIC0,TIC1,TIC2,TIC3,TIC4,TIC5,SIC0,SIC1,SIC2,SIC3,SIC4,SIC5,CIC0,CIC1,CIC2,CIC3,CIC4,CIC5,BIC0,BIC1,BIC2,BIC3,BIC4,BIC5,MIC0,MIC1,MIC2,MIC3,MIC4,MIC5,ZMIC0,ZMIC1,ZMIC2,ZMIC3,ZMIC4,ZMIC5,Kier1,Kier2,Kier3,nAtomLC,nAtomP,nAtomLAC,MLogP,McGowan_Volume,MDEC-11,MDEC-12,MDEC-13,MDEC-14,MDEC-22,MDEC-23,MDEC-24,MDEC-33,MDEC-34,MDEC-44,MDEO-11,MDEO-12,MDEO-22,MDEN-11,MDEN-12,MDEN-13,MDEN-22,MDEN-23,MDEN-33,MLFER_A,MLFER_BH,MLFER_BO,MLFER_S,MLFER_E,MLFER_L,MPC2,MPC3,MPC4,MPC5,MPC6,MPC7,MPC8,MPC9,MPC10,TPC,piPC1,piPC2,piPC3,piPC4,piPC5,piPC6,piPC7,piPC8,piPC9,piPC10,TpiPC,R_TpiPCTPC,PetitjeanNu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+UMLYSI0118,L,methylcyclopentadiene dimer,CC1=CC2C3CC(C=C3C)C2C1,aromatic,C12H16,26472-00-4,n/a,UML,"2,5-Dimethyl-3a,4,7,7a-tetrahydro-1H-4,7-methanoindene",189.2,0,1.5312,2.34457344,51.5726,31.788688,0,0,28,12,16,0,12,0,0,0,0,0,0,0,0,0,1747.426476,2213.411102,3545.151814,2841.028359,1841.420961,1030.265549,399.614713,87.883488,9.144576,5579.542732,7765.022486,13008.14029,13005.18862,9687.437314,5689.039018,3122.337907,1154.675865,279.7536999,197.981616,219.449336,433.168024,578.480604,595.232964,402.962036,237.233188,143.482752,60.466176,40.58060648,56.86130896,98.31903254,107.969179,86.98579978,52.89440628,30.83975396,13.35045943,4.001516144,4480.214705,4225.081749,8862.493482,12357.74964,13859.49638,9703.319939,5593.174787,3692.500067,1664.258868,49.16666667,62.05555556,108.5555556,139.75,128.1111111,85,52,27,9,62.40808843,73.78037007,59.08586357,35.07442419,21.66377601,17.76319912,11.75337391,4.184928,1.016064,199.2693833,258.8340829,216.8023381,160.5578841,113.9698508,98.08687962,91.83346785,54.98456499,31.08374443,7.070772,7.314977867,7.219467067,7.141735852,7.002740753,6.94762131,6.977446706,6.832512,6.718464,1.449307374,1.895376965,1.638650542,1.332952827,1.02336235,0.911972522,0.907051587,0.635736163,0.444612905,160.0076681,140.8360583,147.7082247,152.5648103,163.0528986,167.2986196,164.5051408,175.8333365,184.917652,1.755952381,2.068518519,1.809259259,1.725308642,1.507189542,1.465517241,1.529411765,1.285714286,1,0.050905529,0.004217743,-0.00827758,-0.043317236,0.017157192,0.004599518,-0.013864359,0.007255213,0.006776745,830.1669189,79.06351608,158.1270322,-793.1058957,-133.4196834,182.8343809,-264.3686319,155.6562973,200.1295251,1543.730835,147.0219843,294.0439686,-1474.81428,-248.0995985,339.9883387,-491.60476,289.4495316,372.1493977,0.162624,0.015488,0.030976,-0.155364,-0.026136,0.035816,-0.051788,0.030492,0.039204,6.901195096,0.657256676,1.314513352,-6.593106029,-1.10912064,1.519906063,-2.19770201,1.293974081,1.663680961,37.48740129,3.570228694,7.140457389,-35.81385659,-6.024760922,8.256153856,-11.9379522,7.028887742,9.037141383,3.734126984,-0.512755102,0.615362812,-3.326105442,0.654336735,1.201530612,-1.105725624,-0.068452381,0.674744898,0.001818055,1.41E-04,-1.38E-04,-5.35E-04,2.02E-04,7.93E-05,-4.08E-04,3.45E-04,7.53E-04,29.64881853,2.635450536,2.635450536,-9.791430811,-1.569643334,3.152316913,-7.775547997,7.412204633,22.2366139,55.13324411,4.90073281,4.90073281,-18.2075837,-2.918818806,5.861867908,-14.45896353,13.78331103,41.34993308,0.005808,5.16E-04,5.16E-04,-0.001918074,-3.07E-04,6.18E-04,-0.001523176,0.001452,0.004356,0.246471253,0.021908556,0.021908556,-0.081396371,-0.013048478,0.026205277,-0.064638294,0.061617813,0.18485344,1.33883576,0.119007623,0.119007623,-0.442146378,-0.07087954,0.14234748,-0.351116241,0.33470894,1.00412682,0.133361678,-0.017091837,0.010256047,-0.04106303,0.007698079,0.020716045,-0.032521342,-0.003259637,0.074971655,0.07733069,-0.075883124,-0.294149962,0.111024893,0.043619174,-0.224292093,0.190030769,0.414163409,0.088888889,0.088888889,-0.330246914,-0.052941176,0.106321839,-0.262254902,0.25,0.75,0.088888889,0.088888889,-0.330246914,-0.052941176,0.106321839,-0.262254902,0.25,0.75,0.088888889,0.088888889,-0.330246914,-0.052941176,0.106321839,-0.262254902,0.25,0.75,0.088888889,0.088888889,-0.330246914,-0.052941176,0.106321839,-0.262254902,0.25,0.75,0.088888889,0.088888889,-0.330246914,-0.052941176,0.106321839,-0.262254902,0.25,0.75,-0.12816153,0.076904003,-0.30790727,0.057723323,0.155337315,-0.243858223,-0.024442083,0.562167906,1.000096072,1.120584679,1.344555968,0.840885103,0.870775307,1.208667786,0.418004626,2.10E-08,1.05,0.984375,1.336805556,0.972794118,0.780711207,1.158088235,0.5625,0,1.05,0.984375,1.336805556,0.972794118,0.780711207,1.158088235,0.5625,0,1.05,0.984375,1.336805556,0.972794118,0.780711207,1.158088235,0.5625,0,1.05,0.984375,1.336805556,0.972794118,0.780711207,1.158088235,0.5625,0,1.05,0.984375,1.336805556,0.972794118,0.780711207,1.158088235,0.5625,0,1.325611052,0.76825186,1.345200142,0.831755954,0.806863571,1.293711321,1.032943677,0,54.31629427,27.12088121,39.73276862,54.31629427,4.526357856,27.12088121,0,0.061266924,0.005105577,-3.351018189,82.92714841,6.910595701,5.301554991,54.31629427,27.12088121,39.73276862,54.31629427,4.526357856,27.12088121,0,0.061266924,0.005105577,-3.351018189,82.92714841,6.910595701,5.301554991,54.31629427,27.12088121,39.73276862,54.31629427,4.526357856,27.12088121,0,0.061266924,0.005105577,-3.351018189,82.92714841,6.910595701,5.301554991,54.31629427,27.12088121,39.73276862,54.31629427,4.526357856,27.12088121,0,0.061266924,0.005105577,-3.351018189,82.92714841,6.910595701,5.301554991,54.31629427,27.12088121,39.73276862,54.31629427,4.526357856,27.12088121,0,0.061266924,0.005105577,-3.351018189,82.92714841,6.910595701,5.301554991,54.31629427,27.12088121,39.73276862,54.31629427,4.526357856,27.12088121,0,0.061266924,0.005105577,-3.351018189,82.92714841,6.910595701,5.301554991,64.0130685,31.57235902,47.47158148,63.78220431,5.315183692,31.57235902,-0.346296296,0.04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+UMLYSI0127,L,"1,2,3,4,4a,5,6,7,8,8a-decahydronaphthalene",C1CCC2CCCCC2C1,aromatic,C10H18,91-17-8,7044,UML,"stereochemistry not specifiied (see below) + + + +cis: C1C[C@H]2CCCC[C@H]2CC1 + + + +trans: 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+UMLYSI0223,L,3-methylbutyl acetate,CC(C)CCOC(=O)C,saturated 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+UMLYSI0240,L,methyl (E)-2-methylpent-2-enoate,CC/C=C(\C)/C(=O)OC,unsaturated 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+UMLYSI0251,L,tert-butyl propanoate,CCC(=O)OC(C)(C)C,saturated 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+UMLYSI0258,L,methyl hex-5-enoate,COC(=O)CCCC=C,unsaturated 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+UMLYSI0266,L,3-methylbutyl formate,CC(C)CCOC=O,saturated 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+UMLYSI0269,L,methyl (E)-2-methylbut-2-enoate,C/C=C(\C)/C(=O)OC,unsaturated 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+UMLYSI0275,L,propyl 2-methylprop-2-enoate,CCCOC(=O)C(=C)C,unsaturated 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+UMLYSI0277,L,ethyl 3-methylbutanoate,CCOC(=O)CC(C)C,saturated 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+UMLYSI0279,L,methyl 3-methylbut-2-enoate,CC(=CC(=O)OC)C,unsaturated 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+UMLYSI0283,L,butyl acetate,CCCCOC(=O)C,saturated 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+UMLYSI0291,L,butan-2-yl acetate,CCC(C)OC(=O)C,saturated 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+UMLYSI0292,L,2-methylpropyl acetate,CC(C)COC(=O)C,saturated 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+UMLYSI0300,L,methyl (E)-pent-2-enoate,CC/C=C/C(=O)OC,unsaturated 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+UMLYSI0306,L,tert-butyl acetate,CC(=O)OC(C)(C)C,saturated 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+UMLYSI0307,L,methyl heptanoate,CCCCCCC(=O)OC,saturated 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+UMLYSI0315,L,"methyl 2,2-dimethylpropanoate",CC(C)(C)C(=O)OC,saturated 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+UMLYSI0323,L,tert-butyl formate,CC(C)(C)OC=O,saturated 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+UMLYSI0325,L,"2,2-dimethylbutanoic acid",CCC(C)(C)C(=O)O,saturated 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+UMLYSI0327,L,ethyl 2-methylbutanoate,CCC(C)C(=O)OCC,saturated 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+UMLYSI0329,L,methyl 2-methylprop-2-enoate,CC(=C)C(=O)OC,unsaturated 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+UMLYSI0334,L,methyl 3-methylbutanoate,CC(C)CC(=O)OC,saturated 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+UMLYSI0343,L,methyl hexanoate,CCCCCC(=O)OC,saturated 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+UMLYSI0347,L,ethyl 2-methylpropanoate,CCOC(=O)C(C)C,saturated 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+UMLYSI0355,L,ethyl 2-methylprop-2-enoate,CCOC(=O)C(=C)C,unsaturated 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+UMLYSI0358,L,methyl 2-methylbutanoate,CCC(C)C(=O)OC,saturated 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+UMLYSI0366,L,methyl pentanoate,CCCCC(=O)OC,saturated 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+UMLYSI0367,L,methyl 2-methylpropanoate,CC(C)C(=O)OC,saturated 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+UMLYSI0380,L,ethyl propanoate,CCC(=O)OCC,saturated 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+UMLYSI0382,L,methyl prop-2-enoate,COC(=O)C=C,unsaturated 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+UMLYSI0408,L,ethyl acetate,CCOC(=O)C,saturated 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+UMLYSI0415,L,dimethyl carbonate,COC(=O)OC,other multi-oxygen 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diff --git a/ecnet/__init__.py b/ecnet/__init__.py index af01be1..b6bce23 100644 --- a/ecnet/__init__.py +++ b/ecnet/__init__.py @@ -1,2 +1,2 @@ from ecnet.server import Server -__version__ = '3.2.3' +__version__ = '3.3.0' diff --git a/ecnet/models/mlp.py b/ecnet/models/mlp.py index 2ef2eab..2755e99 100644 --- a/ecnet/models/mlp.py +++ b/ecnet/models/mlp.py @@ -2,184 +2,215 @@ # -*- coding: utf-8 -*- # # ecnet/models/mlp.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains the "MultilayerPerceptron" (feed-forward neural network) class # # Stdlib imports +from os import environ from re import compile, IGNORECASE -from os import devnull, environ -import sys # 3rd party imports -from tensorflow import get_default_graph, logging -from numpy import array -stderr = sys.stderr -sys.stderr = open(devnull, 'w') -from keras.backend import clear_session, reset_uids -from keras.callbacks import EarlyStopping -from keras.layers import Dense -from keras.losses import mean_squared_error -from keras.metrics import mae -from keras.models import load_model, Sequential -from keras.optimizers import Adam -sys.stderr = stderr +from h5py import File +from numpy import array, string_, zeros +from tensorflow import config, Tensor +from tensorflow.keras.callbacks import EarlyStopping +from tensorflow.keras.layers import Dense +from tensorflow.keras.losses import MeanSquaredError +from tensorflow.keras.models import Model +from tensorflow.keras.optimizers import Adam # ECNet imports from ecnet.utils.logging import logger environ['TF_CPP_MIN_LOG_LEVEL'] = '2' -logging.set_verbosity(logging.ERROR) - +config.experimental_run_functions_eagerly(True) H5_EXT = compile(r'.*\.h5', flags=IGNORECASE) -class MultilayerPerceptron: +def check_h5(filename: str): + ''' Ensures a given filename has an `.h5` extension + + Args: + filename (str): filename to check + ''' + + if H5_EXT.match(filename) is None: + raise ValueError( + 'Invalid filename/extension, must be `.h5`: {}'.format( + filename + ) + ) + + +class MultilayerPerceptron(Model): - def __init__(self, filename: str='model.h5'): - '''MultilayerPerceptron object: fits neural network to supplied inputs - and targets + def __init__(self, filename: str = 'model.h5'): + ''' MultilayerPerceptron: Feed-forward neural network; variable number + of layers, variable size/activations of layers; handles training, + saving/loading of models Args: - filename (str): path to model save location (.h5 extension) + filename (str): filename/path for the model (default: `model.h5`) ''' - if H5_EXT.match(filename) is None: - raise ValueError( - 'Invalid filename/extension, must be `.h5`: {}'.format( - filename - ) - ) + super(MultilayerPerceptron, self).__init__() + check_h5(filename) self._filename = filename - clear_session() - self._model = Sequential(name=filename.lower().replace('.h5', '')) + self._layers = [] def add_layer(self, num_neurons: int, activation: str, - input_dim: int=None): - '''Adds a fully-connected layer to the model + input_dim: int = None): + ''' add_layer: adds a layer to the MLP; layers are added sequentially; + first layer must have input dimensionality specified Args: - num_neurons (int): number of neurons for the layer - activation (str): activation function for the layer (see Keras - activation function documentation) - input_dim (int): if not None (input layer), specifies input - dimensionality + num_neurons (int): number of neurons in the layer + activation (str): activation function used by the layer; refer to + https://www.tensorflow.org/api_docs/python/tf/keras/activations + for usable activation functions + input_dim (int): specify input dimensionality for the first layer; + all other layers depend on previous layers' size (number of + neurons), should be kept as `None` (default value) ''' - self._model.add(Dense( + if len(self._layers) == 0: + if input_dim is None: + raise ValueError('First layer must have input_dim specified') + + self._layers.append(Dense( units=num_neurons, activation=activation, input_shape=(input_dim,) )) - def fit(self, l_x: array, l_y: array, v_x: array=None, v_y: array=None, - epochs: int=1500, lr: float=0.001, beta_1: float=0.9, - beta_2: float=0.999, epsilon: float=0.0000001, decay: float=0.0, - v: int=0, batch_size: int=32): - '''Fits neural network to supplied inputs and targets + def call(self, x: Tensor) -> Tensor: + ''' call: used by Model.fit (parent) to perform feed-forward operations Args: - l_x (numpy.array): learning input data - l_y (numpy.array): learning target data - v_x (numpy.array): if not None, periodic validation is performed w/ - these inputs - v_y (numpy.array): if not None, periodic validation is performed w/ - these targets - epochs (int): number of learning epochs if not validating, maximum - number of learning epochs if performing periodic validation - lr (float): learning rate for Adam optimizer - beta_1 (float): beta_1 value for Adam optimizer - beta_2 (float): beta_2 value for Adam optimizer - epsilon (float): epsilon value for Adam optimizer - decay (float): learning rate decay for Adam optimizer - v (int): verbose training, `0` for no printing, `1` for printing - batch_size (int): number of learning samples per batch + x (tf.Tensor): data fed into first layer + + Returns: + tf.Tensor: data resulting from last layer ''' - self._model.compile( - loss=mean_squared_error, - optimizer=Adam( - lr=lr, - beta_1=beta_1, - beta_2=beta_2, - epsilon=epsilon, - decay=decay - ), - metrics=[mae] - ) + for layer in self._layers: + x = layer(x) + return x + + def fit(self, l_x: array, l_y: array, v_x: array = None, v_y: array = None, + epochs: int = 1500, lr: float = 0.001, beta_1: float = 0.9, + beta_2: float = 0.999, epsilon: float = 0.0000001, + decay: float = 0.0, v: int = 0, batch_size: int = 32, + patience: int = 128) -> tuple: + ''' fit: trains model using supplied data; may supply additional data + to use as validation set (determines learning cutoff); hyperparameters + for Adam optimization function, batch size, patience (if validating) + may be specified + + Args: + l_x (np.array): learning input data; each sub-iterable is a sample + l_y (np.array): learning target data; each sub-iterable is a sample + v_x (np.array): validation input data (`None` for no validation) + v_y (np.array): validation target data (`None` for no validation) + epochs (int): number of training iterations, max iterations if + performing validation + lr (float): learning rate of Adam optimization fn + beta_1 (float): first moment estimate of Adam optimization fn + beta_2 (float): second moment estimate of Adam optimization fn + epsilon (float): number to prevent division by zero in Adam fn + decay (float): decay of learning date in Adam optimization fn + v (int): whether Model.fit (parent) is verbose (1 True, 0 False) + batch_size (int): size of each training batch + patience (int): maximum number of epochs to wait before better + validation loss found; if not found, training terminates, best + weights restored + + Returns: + tuple: (list: learn losses, list: valid losses); each list equal + length; each list element represents loss at corresponding + epoch + ''' + + self.compile(optimizer=Adam(lr=lr, beta_1=beta_1, beta_2=beta_2, + epsilon=epsilon, + decay=decay), + loss=MeanSquaredError()) if v_x is not None and v_y is not None: - history = self._model.fit( - l_x, - l_y, - validation_data=(v_x, v_y), - callbacks=[EarlyStopping( - monitor='val_loss', - patience=250, - verbose=v, - mode='min', - restore_best_weights=True - )], - epochs=epochs, - verbose=v, - batch_size=batch_size - ) - epochs = len(history.history['loss']) + + callback = EarlyStopping(monitor='val_loss', patience=patience, + restore_best_weights=True) + history = super().fit(l_x, l_y, batch_size=batch_size, + epochs=epochs, verbose=v, + callbacks=[callback], + validation_data=(v_x, v_y)) + return (history.history['loss'], history.history['val_loss']) + else: - self._model.fit( - l_x, - l_y, - epochs=epochs, - verbose=v, - batch_size=batch_size - ) - logger.log('debug', 'Training complete after {} epochs'.format(epochs), - call_loc='MLP') + history = super().fit(l_x, l_y, batch_size=batch_size, + epochs=epochs, verbose=v) + return (history.history['loss'], [None for _ in range(epochs)]) def use(self, x: array) -> array: - '''Uses neural network to predict values for supplied data + ''' use: uses the model to predict values for supplied data Args: - x (numpy.array): input data to predict for + x (np.array): input data to predict for - Returns - numpy.array: predictions + Returns: + np.array: predicted values ''' - with get_default_graph().as_default(): - return self._model.predict(x) + return self.predict(x) - def save(self, filename: str=None): - '''Saves neural network to .h5 file + def save(self, filename: str = None): + ''' save: saves the model weights, architecture to either the filename/ + path specified when object was created, or new, supplied filename/path - filename (str): if None, uses MultilayerPerceptron._filename; - otherwise, saves to this file + Args: + filename (str): new filepath if different than init filename/path ''' if filename is None: filename = self._filename - if H5_EXT.match(filename) is None: - raise ValueError( - 'Invalid filename/extension, must be `.h5`: {}'.format( - filename - ) - ) - self._model.save(filename) + check_h5(filename) + self.save_weights(filename, save_format='h5') + input_size = self.layers[0].get_config()['batch_input_shape'][1] + layer_sizes = [l.get_config()['units'] for l in self.layers] + layer_activ = [l.get_config()['activation'] for l in self.layers] + with File(filename, 'a') as hf: + hf['mlp_input_size'] = input_size + hf['mlp_layer_sizes'] = layer_sizes + hf['mlp_layer_activ'] = string_(layer_activ) + hf.close() logger.log('debug', 'Model saved to {}'.format(filename), call_loc='MLP') - def load(self, filename: str=None): - '''Loads neural network from .h5 file + def load(self, filename: str = None): + ''' load: loads a saved model, restoring the architecture/weights; + loads from filename/path specified during object initialization, + unless new filename/path specified Args: - filename (str): path to .h5 model file + filename (str): new filepath if different than init filename/path ''' if filename is None: filename = self._filename - self._model = load_model(filename) + with File(filename, 'r') as hf: + input_size = hf.get('mlp_input_size').value + layer_sizes = hf.get('mlp_layer_sizes').value + layer_activ = hf.get('mlp_layer_activ').value + hf.close() + self.add_layer(layer_sizes[0], layer_activ[0].decode('ascii'), + input_size) + for idx, layer in enumerate(layer_sizes[1:]): + self.add_layer(layer, layer_activ[idx].decode('ascii')) + self.build(input_shape=(None, input_size)) + self.load_weights(filename) logger.log('debug', 'Model loaded from {}'.format(filename), call_loc='MLP') diff --git a/ecnet/server.py b/ecnet/server.py index 226ae55..c72c1b0 100644 --- a/ecnet/server.py +++ b/ecnet/server.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/server.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains the "Server" class, which handles ECNet project creation, neural # network model creation, data hand-off to models, prediction error @@ -26,8 +26,8 @@ class Server: - def __init__(self, model_config: str='config.yml', prj_file: str=None, - num_processes: int=1): + def __init__(self, model_config: str = 'config.yml', prj_file: str = None, + num_processes: int = 1): '''Server object: handles data loading, model creation, data-to-model hand-off, data input parameter selection, hyperparameter tuning @@ -69,8 +69,8 @@ def __init__(self, model_config: str='config.yml', prj_file: str=None, self._vars = default_config() save_config(self._vars, self._cf_file) - def load_data(self, filename: str, random: bool=False, split: list=None, - normalize: bool=False): + def load_data(self, filename: str, random: bool = False, + split: list = None, normalize: bool = False): '''Loads data from an ECNet-formatted CSV database Args: @@ -90,8 +90,8 @@ def load_data(self, filename: str, random: bool=False, split: list=None, self._df.create_sets(random, split) self._sets = self._df.package_sets() - def create_project(self, project_name: str, num_pools: int=1, - num_candidates: int=1): + def create_project(self, project_name: str, num_pools: int = 1, + num_candidates: int = 1): '''Creates folder hierarchy for a new project Args: @@ -111,8 +111,9 @@ def create_project(self, project_name: str, num_pools: int=1, logger.log('debug', 'Number of candidates/pool: {}'.format( num_candidates), call_loc='PROJECT') - def limit_inputs(self, limit_num: int, num_estimators: int=None, - output_filename: str=None, **kwargs) -> list: + def limit_inputs(self, limit_num: int, num_estimators: int = None, + eval_set: str = 'learn', output_filename: str = None, + **kwargs) -> list: '''Selects `limit_num` influential input parameters using random forest regression @@ -122,6 +123,8 @@ def limit_inputs(self, limit_num: int, num_estimators: int=None, defaults to the total number of inputs output_filename (str): if not None, new limited database is saved here + eval_set (str): set to perform RFR on (`learn`, `valid`, `train`, + `test`, None (all)) (default: `learn`) **kwargs: any argument accepted by sklearn.ensemble.RandomForestRegressor @@ -133,7 +136,9 @@ def limit_inputs(self, limit_num: int, num_estimators: int=None, self._df, limit_num, num_estimators, - self._num_processes + self._num_processes, + eval_set, + **kwargs ) self._df.set_inputs([r[0] for r in result]) self._sets = self._df.package_sets() @@ -144,9 +149,9 @@ def limit_inputs(self, limit_num: int, num_estimators: int=None, return result def tune_hyperparameters(self, num_employers: int, num_iterations: int, - shuffle: bool=None, split: list=None, - validate: bool=True, eval_set: str=None, - eval_fn: str='rmse'): + shuffle: bool = None, split: list = None, + validate: bool = True, eval_set: str = None, + eval_fn: str = 'rmse', epochs: int = 300): '''Tunes neural network learning hyperparameters using an artificial bee colony algorithm; tuned hyperparameters are saved to Server's model configuration file @@ -162,6 +167,7 @@ def tune_hyperparameters(self, num_employers: int, num_iterations: int, `train`, `test`, None (all sets) eval_fn (str): error function used to evaluate bee fitness; `rmse`, `mean_abs_error`, `med_abs_error` + epochs (int): number of training epochs per bee ANN (def: 300) ''' self._vars = tune_hyperparameters( @@ -174,13 +180,15 @@ def tune_hyperparameters(self, num_employers: int, num_iterations: int, split, validate, eval_set, - eval_fn + eval_fn, + epochs ) save_config(self._vars, self._cf_file) - def train(self, shuffle: str=None, split: list=None, retrain: bool=False, - validate: bool=False, selection_set: str=None, - selection_fn: str='rmse'): + def train(self, shuffle: str = None, split: list = None, + retrain: bool = False, validate: bool = False, + selection_set: str = None, selection_fn: str = 'rmse', + model_filename: str = 'model.h5', verbose: int = 0) -> tuple: '''Trains neural network(s) using currently-loaded data; single NN if no project is created, all candidates if created @@ -196,18 +204,29 @@ def train(self, shuffle: str=None, split: list=None, retrain: bool=False, set; `learn`, `valid`, `train`, `test`, None (all data) selection_fn (str): candidates are selected based on this error metric; `rmse`, `mean_abs_error`, `med_abs_error` + model_filename (str): if project not created, saves `.h5` file + here + verbose (int): 1 to display loss at each epoch, 0 otherwise (single + model only) + + Returns: + tuple: if training single model, returns tuple of learn/valid + losses, else None ''' if self._prj_name is None: logger.log('info', 'Training single model', call_loc='TRAIN') - train_model( + _, losses = train_model( self._sets, self._vars, selection_set, selection_fn, retrain, - validate=validate + model_filename, + validate, + verbose=verbose ) + return losses else: train_project( @@ -225,8 +244,10 @@ def train(self, shuffle: str=None, split: list=None, retrain: bool=False, selection_fn, self._num_processes ) + return None - def use(self, dset: str=None, output_filename: str=None) -> list: + def use(self, dset: str = None, output_filename: str = None, + model_filename: str = 'model.h5') -> list: '''Uses trained neural network(s) to predict for specified set; single NN if no project created, best pool candidates if created @@ -234,13 +255,14 @@ def use(self, dset: str=None, output_filename: str=None) -> list: dset (str): set to predict for; `learn`, `valid`, `train`, `test`, None (all sets) output_filename (str): if supplied, saves results to this CSV file + model_filename (str): if supplied, use specified .h5 model file Returns: list: list of results for specified set ''' if self._prj_name is None: - results = use_model(self._sets, dset) + results = use_model(self._sets, dset, model_filename) else: results = use_project( @@ -255,7 +277,8 @@ def use(self, dset: str=None, output_filename: str=None) -> list: call_loc='USE') return results - def errors(self, *args, dset: str=None) -> dict: + def errors(self, *args, dset: str = None, + model_filename: str = 'model.h5') -> dict: '''Obtains various errors for specified set Args: @@ -263,6 +286,8 @@ def errors(self, *args, dset: str=None) -> dict: `med_abs_error`, `r2` dset (str): set to obtain errors for; `learn`, `valid`, `train`, `test`, None (all sets) + model_filename (str): if specified, uses .h5 model file for error + calculations Returns: dict: {'error_fn', value ...} with supplied errors @@ -271,7 +296,7 @@ def errors(self, *args, dset: str=None) -> dict: for err in args: logger.log('debug', 'Calculating {} for {} set'.format(err, dset), call_loc='ERRORS') - preds = self.use(dset) + preds = self.use(dset, model_filename=model_filename) y_vals = get_y(self._sets, dset) errors = {} for err in args: @@ -279,8 +304,8 @@ def errors(self, *args, dset: str=None) -> dict: logger.log('debug', 'Errors: {}'.format(errors), call_loc='ERRORS') return errors - def save_project(self, filename: str=None, clean_up: bool=True, - del_candidates: bool=False): + def save_project(self, filename: str = None, clean_up: bool = True, + del_candidates: bool = False): '''Saves current state of project to a .prj file Args: diff --git a/ecnet/tasks/limit_inputs.py b/ecnet/tasks/limit_inputs.py index 3902730..48b1d74 100644 --- a/ecnet/tasks/limit_inputs.py +++ b/ecnet/tasks/limit_inputs.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/tasks/limit_inputs.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains functions for selecting influential input parameters # @@ -18,10 +18,12 @@ # ECNet imports from ecnet.utils.data_utils import DataFrame from ecnet.utils.logging import logger +from ecnet.utils.server_utils import get_x, get_y -def limit_rforest(df: DataFrame, limit_num: int, num_estimators: int=None, - num_processes: int=1, **kwargs) -> list: +def limit_rforest(df: DataFrame, limit_num: int, num_estimators: int = None, + num_processes: int = 1, eval_set: str = 'learn', + **kwargs) -> list: '''Uses random forest regression to select input parameters Args: @@ -29,6 +31,8 @@ def limit_rforest(df: DataFrame, limit_num: int, num_estimators: int=None, limit_num (int): desired number of input parameters num_estimators (int): number of trees used by RFR algorithm num_processes (int): number of parallel jobs for RFR algorithm + eval_set (str): set to perform RFR on (`learn`, `valid`, `train`, + `test`, None (all)) (default: `learn`) **kwargs: any argument accepted by sklearn.ensemble.RandomForestRegressor @@ -40,15 +44,8 @@ def limit_rforest(df: DataFrame, limit_num: int, num_estimators: int=None, .format(limit_num), call_loc='LIMIT') pd = df.package_sets() - X = pd.learn_x - y = pd.learn_y - if len(pd.valid_x) > 0: - X = concatenate((X, pd.valid_x)) - y = concatenate((y, pd.valid_y)) - if len(pd.test_x) > 0: - X = concatenate((X, pd.test_x)) - y = concatenate((y, pd.test_y)) - y = ravel(y) + X = get_x(pd, eval_set) + y = ravel(get_y(pd, eval_set)) if num_estimators is None: num_estimators = len(X[0]) diff --git a/ecnet/tasks/training.py b/ecnet/tasks/training.py index 606054d..252b14f 100644 --- a/ecnet/tasks/training.py +++ b/ecnet/tasks/training.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/tasks/training.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains function for project training (multiprocessed training) # @@ -83,7 +83,7 @@ def train_project(prj_name: str, num_pools: int, num_candidates: int, pool_errors[pool].append(train_model( sets, vars, selection_set, selection_fn, retrain, filename, validate - )) + )[0]) if shuffle is not None: df.shuffle(sets=shuffle, split=split) @@ -93,7 +93,7 @@ def train_project(prj_name: str, num_pools: int, num_candidates: int, train_pool.close() train_pool.join() for p_idx, pool in enumerate(pool_errors): - pool_errors[p_idx] = [e.get() for e in pool] + pool_errors[p_idx] = [e.get()[0] for e in pool] logger.log('debug', 'Pool errors: {}'.format(pool_errors), call_loc='TRAIN') diff --git a/ecnet/tasks/tuning.py b/ecnet/tasks/tuning.py index dbc41ee..3792a6d 100644 --- a/ecnet/tasks/tuning.py +++ b/ecnet/tasks/tuning.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/tasks/tuning.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains functions/fitness functions for tuning hyperparameters # @@ -22,10 +22,10 @@ def tune_hyperparameters(df: DataFrame, vars: dict, num_employers: int, - num_iterations: int, num_processes: int=1, - shuffle: str=None, split: list=None, - validate: bool=True, eval_set: str=None, - eval_fn: str='rmse') -> dict: + num_iterations: int, num_processes: int = 1, + shuffle: str = None, split: list = None, + validate: bool = True, eval_set: str = None, + eval_fn: str = 'rmse', epochs: int = 300) -> dict: '''Tunes neural network learning/architecture hyperparameters Args: @@ -41,6 +41,7 @@ def tune_hyperparameters(df: DataFrame, vars: dict, num_employers: int, `train`, `test`, None (all sets) eval_fn (str): error function used to evaluate bee performance; `rmse`, `mean_abs_error`, `med_abs_error` + epochs (int): number of training epochs per bee ANN (def: 300) Returns: dict: tuned hyperparameters @@ -67,20 +68,19 @@ def tune_hyperparameters(df: DataFrame, vars: dict, num_employers: int, 'validate': validate, 'eval_set': eval_set, 'eval_fn': eval_fn, - 'hidden_layers': vars['hidden_layers'] + 'hidden_layers': vars['hidden_layers'], + 'epochs': epochs } value_ranges = [ - ('float', (0.0, 1.0)), - ('float', (0.0, 1.0)), - ('float', (0.0, 1.0)), - ('float', (0.0, 1.0)), - ('float', (0.0, 1.0)), - ('int', (1, len(df.learn_set))) + ('float', (1e-9, 1e-4)), # Learning rate decay + ('float', (1e-5, 0.1)), # Learning rate + ('int', (1, len(df.learn_set))), # Batch size + ('int', (64, 1024)) # Patience ] for _ in range(len(vars['hidden_layers'])): - value_ranges.append(('int', (1, 100))) + value_ranges.append(('int', (1, len(df._input_names)))) abc = ABC( tune_fitness_function, @@ -101,24 +101,20 @@ def tune_hyperparameters(df: DataFrame, vars: dict, num_employers: int, abc.run_iteration() logger.log('info', 'Best Performer: {}, {}'.format( abc.best_performer[2], { - 'beta_1': abc.best_performer[1][0], - 'beta_2': abc.best_performer[1][1], - 'decay': abc.best_performer[1][2], - 'epsilon': abc.best_performer[1][3], - 'learning_rate': abc.best_performer[1][4], - 'batch_size': abc.best_performer[1][5], - 'hidden_layers': abc.best_performer[1][6:] + 'decay': abc.best_performer[1][0], + 'learning_rate': abc.best_performer[1][1], + 'batch_size': abc.best_performer[1][2], + 'patience': abc.best_performer[1][3], + 'hidden_layers': abc.best_performer[1][4:] } ), call_loc='TUNE') params = abc.best_performer[1] - vars['beta_1'] = params[0] - vars['beta_2'] = params[1] - vars['decay'] = params[2] - vars['epsilon'] = params[3] - vars['learning_rate'] = params[4] - vars['batch_size'] = params[5] + vars['decay'] = params[0] + vars['learning_rate'] = params[1] + vars['batch_size'] = params[2] + vars['patience'] = params[3] for l_idx in range(len(vars['hidden_layers'])): - vars['hidden_layers'][l_idx][0] = params[6 + l_idx] + vars['hidden_layers'][l_idx][0] = params[4 + l_idx] return vars @@ -134,16 +130,14 @@ def tune_fitness_function(params: dict, **kwargs): ''' vars = default_config() - vars['beta_1'] = params[0] - vars['beta_2'] = params[1] - vars['decay'] = params[2] - vars['epsilon'] = params[3] - vars['learning_rate'] = params[4] - vars['batch_size'] = params[5] + vars['decay'] = params[0] + vars['learning_rate'] = params[1] + vars['batch_size'] = params[2] + vars['patience'] = params[3] vars['hidden_layers'] = kwargs['hidden_layers'] - vars['epochs'] = 3000 + vars['epochs'] = kwargs['epochs'] for l_idx in range(len(vars['hidden_layers'])): - vars['hidden_layers'][l_idx][0] = params[6 + l_idx] + vars['hidden_layers'][l_idx][0] = params[4 + l_idx] df = kwargs['df'] if kwargs['shuffle'] is not None: @@ -151,4 +145,4 @@ def tune_fitness_function(params: dict, **kwargs): sets = df.package_sets() return train_model(sets, vars, kwargs['eval_set'], kwargs['eval_fn'], - validate=kwargs['validate'], save=False) + validate=kwargs['validate'], save=False)[0] diff --git a/ecnet/tools/database.py b/ecnet/tools/database.py index 5385481..4be7e76 100644 --- a/ecnet/tools/database.py +++ b/ecnet/tools/database.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/tools/database.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains functions for creating ECNet-formatted databases # @@ -20,7 +20,7 @@ try: import pybel -except: +except ImportError: pybel = None @@ -35,9 +35,9 @@ def __init__(self, id): self.inputs = None -def create_db(smiles: list, db_name: str, targets: list=None, - id_prefix: str='', extra_strings: dict={}, backend: str='padel', - convert_mdl: bool=False): +def create_db(smiles: list, db_name: str, targets: list = None, + id_prefix: str = '', extra_strings: dict = {}, + backend: str = 'padel', convert_mdl: bool = False): ''' create_db: creates an ECNet-formatted database from SMILES strings using either PaDEL-Descriptor or alvaDesc software; using alvaDesc requires a valid installation/license of alvaDesc diff --git a/ecnet/tools/plotting.py b/ecnet/tools/plotting.py index 441db81..895aafb 100644 --- a/ecnet/tools/plotting.py +++ b/ecnet/tools/plotting.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/tools/plotting.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains functions/classes for creating various plots # @@ -18,9 +18,10 @@ class ParityPlot: - def __init__(self, title: str='Parity Plot', - x_label: str='Experimental Value', - y_label: str='Predicted Value', font: str='Times New Roman'): + def __init__(self, title: str = 'Parity Plot', + x_label: str = 'Experimental Value', + y_label: str = 'Predicted Value', + font: str = 'Times New Roman'): ''' ParityPlot: creates a plot of predicted values vs. experimental data relative to a 1:1 parity line @@ -39,7 +40,7 @@ def __init__(self, title: str='Parity Plot', self._min_val = 0 self._labels = None - def add_series(self, x_vals, y_vals, name: str=None, color: str=None): + def add_series(self, x_vals, y_vals, name: str = None, color: str = None): ''' Adds data to the plot Args: @@ -67,7 +68,7 @@ def add_series(self, x_vals, y_vals, name: str=None, color: str=None): if y_min < self._min_val: self._min_val = y_min - def add_error_bars(self, error: float, label: str=None): + def add_error_bars(self, error: float, label: str = None): ''' Adds error bars, +/- the error relative to the 1:1 parity line Args: @@ -96,7 +97,7 @@ def save(self, filename: str): self._add_parity_line() plt.savefig(filename) - def _add_parity_line(self, offset: float=0.0): + def _add_parity_line(self, offset: float = 0.0): ''' Adds a 1:1 parity line Args: diff --git a/ecnet/tools/project.py b/ecnet/tools/project.py index b09a7d2..ba00b57 100644 --- a/ecnet/tools/project.py +++ b/ecnet/tools/project.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/tools/project.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains functions for predicting data using pre-existing .prj files # @@ -20,8 +20,8 @@ from ecnet.tools.database import create_db -def predict(smiles: list, prj_file: str, results_file: str=None, - backend: str='padel') -> list: +def predict(smiles: list, prj_file: str, results_file: str = None, + backend: str = 'padel') -> list: ''' predict: predicts values for supplied molecules (SMILES strings) using pre-existing ECNet project (.prj) file diff --git a/ecnet/utils/data_utils.py b/ecnet/utils/data_utils.py index bbdee25..0a32407 100644 --- a/ecnet/utils/data_utils.py +++ b/ecnet/utils/data_utils.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/utils/data_utils.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains functions/classes for loading data, saving data, saving results # @@ -33,8 +33,8 @@ def __init__(self): class PackagedData: def __init__(self): - '''PackagedData object: contains lists of input and target data for data - set assignments + '''PackagedData object: contains lists of input and target data for + data set assignments ''' self.learn_x = [] @@ -58,7 +58,7 @@ def __init__(self, filename: str): if '.csv' not in filename: filename += '.csv' try: - with open(filename, newline='') as file: + with open(filename, newline='', encoding='utf8') as file: rows = list(reader(file)) except FileNotFoundError: raise Exception('CSV database not found: {}'.format(filename)) @@ -112,7 +112,7 @@ def __len__(self): return len(self.data_points) - def create_sets(self, random: bool=False, split: list=[0.7, 0.2, 0.1]): + def create_sets(self, random: bool = False, split: list = [0.7, 0.2, 0.1]): '''Creates learning, validation and test sets Args: @@ -167,9 +167,9 @@ def create_sets(self, random: bool=False, split: list=[0.7, 0.2, 0.1]): logger.log('debug', 'Number of entries in test set: {}'.format( len(self.test_set)), call_loc='DF') - def create_sorted_sets(self, sort_str: str, split: list=[0.7, 0.2, 0.1]): - '''Creates random learn, validate and test sets, ensuring data points with - the supplied sort string are split proportionally between the sets + def create_sorted_sets(self, sort_str: str, split: list = [0.7, 0.2, 0.1]): + '''Creates random learn, validate and test sets, ensuring data points + with the supplied sort string are split proportionally between the sets Args: sort_str (str): database STRING value used to sort data points @@ -239,7 +239,7 @@ def normalize(self): (float(getattr(pt, inp)) - v_min) / (v_max - v_min) ) - def shuffle(self, sets: str='all', split: list=[0.7, 0.2, 0.1]): + def shuffle(self, sets: str = 'all', split: list = [0.7, 0.2, 0.1]): '''Shuffles learning, validation and test sets or learning and validation sets @@ -371,7 +371,7 @@ def save(self, filename: str): data_rows.append(data_row) rows.extend(sorted(data_rows, key=lambda x: x[0])) - with open(filename, 'w') as csv_file: + with open(filename, 'w', encoding='utf8') as csv_file: wr = writer(csv_file, quoting=QUOTE_ALL, lineterminator='\n') for row in rows: wr.writerow(row) @@ -437,7 +437,7 @@ def save_results(results: list, dset: str, df: DataFrame, filename: str): data_rows.append(data_row) rows.extend(sorted(data_rows, key=lambda x: x[0])) - with open(filename, 'w') as csv_file: + with open(filename, 'w', encoding='utf8') as csv_file: wr = writer(csv_file, quoting=QUOTE_ALL, lineterminator='\n') for row in rows: wr.writerow(row) diff --git a/ecnet/utils/error_utils.py b/ecnet/utils/error_utils.py index 4546c39..16cbf1b 100644 --- a/ecnet/utils/error_utils.py +++ b/ecnet/utils/error_utils.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/utils/error_utils.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains functions for error calculations # diff --git a/ecnet/utils/logging.py b/ecnet/utils/logging.py index f4cc13d..32798bc 100644 --- a/ecnet/utils/logging.py +++ b/ecnet/utils/logging.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/utils/logging.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains logger used by ECNet # diff --git a/ecnet/utils/server_utils.py b/ecnet/utils/server_utils.py index 12ec84f..4d2b1f7 100644 --- a/ecnet/utils/server_utils.py +++ b/ecnet/utils/server_utils.py @@ -2,8 +2,8 @@ # -*- coding: utf-8 -*- # # ecnet/utils/server_utils.py -# v.3.2.3 -# Developed in 2019 by Travis Kessler +# v.3.3.0 +# Developed in 2020 by Travis Kessler # # Contains functions used by ecnet.Server # @@ -65,22 +65,23 @@ def default_config() -> dict: return { 'epochs': 3000, - 'learning_rate': 0.001, + 'learning_rate': 0.01, 'beta_1': 0.9, 'beta_2': 0.999, - 'epsilon': 0.0000001, + 'epsilon': 1e-8, 'decay': 0.0, 'hidden_layers': [ [32, 'relu'], [32, 'relu'] ], 'output_activation': 'linear', - 'batch_size': 32 + 'batch_size': 32, + 'patience': 128 } -def get_candidate_path(prj: str, pool: int, candidate: int=None, - model: bool=False, p_best: bool=False) -> str: +def get_candidate_path(prj: str, pool: int, candidate: int = None, + model: bool = False, p_best: bool = False) -> str: '''Get path to various states of model.h5 files Args: @@ -366,8 +367,9 @@ def save_project(prj_name: str, filename: str, config_filename: str, def train_model(sets: PackagedData, vars: dict, eval_set: str, eval_fn: str, - retrain: bool=False, filename: str='model.h5', - validate: bool=True, save: bool=True) -> float: + retrain: bool = False, filename: str = 'model.h5', + validate: bool = True, save: bool = True, + verbose: int = 0) -> tuple: '''Trains neural network Args: @@ -380,9 +382,11 @@ def train_model(sets: PackagedData, vars: dict, eval_set: str, eval_fn: str, retrain (bool): if True, opens model for additional training filename (str): path to .h5 model file, loads from this if retraining save (bool): if True, saves model to `filename` + verbose (int): 1 to display loss at each epoch, 0 otherwise (single + model only) Returns: - float: error of evaluated set + tuple: (error of evaluated set, tuple of learn/valid losses) ''' model = MultilayerPerceptron(filename=filename) @@ -396,7 +400,7 @@ def train_model(sets: PackagedData, vars: dict, eval_set: str, eval_fn: str, model.add_layer(layer[0], layer[1]) model.add_layer(len(sets.learn_y[0]), vars['output_activation']) if validate: - model.fit( + losses = model.fit( sets.learn_x, sets.learn_y, sets.valid_x, @@ -407,10 +411,12 @@ def train_model(sets: PackagedData, vars: dict, eval_set: str, eval_fn: str, beta_2=vars['beta_2'], epsilon=vars['epsilon'], decay=vars['decay'], - batch_size=vars['batch_size'] + batch_size=vars['batch_size'], + v=verbose, + patience=vars['patience'] ) else: - model.fit( + losses = model.fit( sets.learn_x, sets.learn_y, epochs=vars['epochs'], @@ -419,19 +425,21 @@ def train_model(sets: PackagedData, vars: dict, eval_set: str, eval_fn: str, beta_2=vars['beta_2'], epsilon=vars['epsilon'], decay=vars['decay'], - batch_size=vars['batch_size'] + batch_size=vars['batch_size'], + v=verbose, + patience=vars['patience'] ) if save: model.save() - return get_error( + return (get_error( model.use(get_x(sets, eval_set)), get_y(sets, eval_set), eval_fn - ) + ), losses) def use_model(sets: PackagedData, dset: str, - filename: str='model.h5') -> array: + filename: str = 'model.h5') -> array: '''Uses existing model to predict data Args: diff --git a/ecnet/workflows/__init__.py b/ecnet/workflows/__init__.py new file mode 100644 index 0000000..52dfc8c --- /dev/null +++ b/ecnet/workflows/__init__.py @@ -0,0 +1,2 @@ +import ecnet.workflows.ecrl_workflow +import ecnet.workflows.workflow_utils diff --git a/ecnet/workflows/ecrl_workflow.py b/ecnet/workflows/ecrl_workflow.py new file mode 100644 index 0000000..c85e0ac --- /dev/null +++ b/ecnet/workflows/ecrl_workflow.py @@ -0,0 +1,174 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# ecnet/workflows/ecrl_workflow.py +# v.3.3.0 +# Developed in 2020 by Travis Kessler +# +# General workflow used by the UMass Lowell Energy and Combustion Research +# Laboratory +# + +# Stdlib imports +from datetime import datetime + +# 3rd party imports +from matplotlib import pyplot as plt + +# ECNet imports +from ecnet import Server +from ecnet.tasks.tuning import tune_hyperparameters +from ecnet.tools.database import create_db +from ecnet.tools.plotting import ParityPlot +from ecnet.utils.data_utils import DataFrame +from ecnet.utils.logging import logger +from ecnet.utils.server_utils import default_config, save_config +from ecnet.workflows.workflow_utils import find_optimal_num_inputs,\ + prop_range_from_split + + +def create_model(prop_abvr: str, smiles: list = None, targets: list = None, + db_name: str = None, qspr_backend: str = 'padel', + create_plots: bool = True, data_split: list = [0.7, 0.2, 0.1], + log_level: str = 'info', log_to_file: bool = True, + num_processes: int = 1): + ''' create_model: ECRL's database/model creation workflow for all + publications + + Args: + prop_abvr (str): abbreviation for the property name (e.g. CN) + smiles (list): if supplied with targets, creates a new database + targets (list): if supplied with smiles, creates a new database + db_name (str): you may supply an existing ECNet-formatted database + qspr_backend (str): if creating new database, generation software to + use (`padel`, `alvadesc`) + create_plots (bool): if True, creates plots for median absolute error + vs. number of descriptors as inputs, parity plot for all sets + data_split (list): [learn %, valid %, test %] for all supplied data + log_level (str): `debug`, `info`, `warn`, `error`, `crit` + log_to_file (bool): if True, saves workflow logs to a file in `logs` + directory + num_processes (int): number of concurrent processes to use for various + tasks + ''' + + # Initialize logging + logger.stream_level = log_level + if log_to_file: + logger.file_level = log_level + + # If database not supplied, create database from supplied SMILES, targets + if db_name is None: + if smiles is None or targets is None: + raise ValueError('Must supply SMILES and target values') + db_name = datetime.now().strftime('{}_model_%Y%m%d.csv'.format( + prop_abvr + )) + logger.log('info', 'Creating database {}...'.format(db_name), + 'WORKFLOW') + create_db(smiles, db_name, targets, prop_abvr, backend=qspr_backend) + logger.log('info', 'Created database {}'.format(db_name), 'WORKFLOW') + + # Create database split, each subset has proportionally equal number of + # compounds based on range of experimental/target values + logger.log('info', 'Creating optimal data split...', 'WORKFLOW') + prop_range_from_split(db_name, data_split) + logger.log('info', 'Created optimal data split', 'WORKFLOW') + df = DataFrame(db_name) + df.create_sets() + logger.log('info', '\tLearning set: {}'.format(len(df.learn_set)), + 'WORKFLOW') + logger.log('info', '\tValidation set: {}'.format(len(df.valid_set)), + 'WORKFLOW') + logger.log('info', '\tTest set: {}'.format(len(df.test_set)), 'WORKFLOW') + + # Find optimal number of QSPR input variables + logger.log('info', 'Finding optimal number of inputs...', 'WORKFLOW') + errors, desc = find_optimal_num_inputs(db_name, 'valid', num_processes) + df = DataFrame(db_name) + df.set_inputs(desc) + df.save(db_name.replace('.csv', '_opt.csv')) + logger.log('info', 'Found optimal number of inputs', 'WORKFLOW') + logger.log('info', '\tNumber of inputs: {}'.format(len(df._input_names)), + 'WORKFLOW') + + # Plot the curve of MAE vs. num. desc. added, if desired + if create_plots: + logger.log('info', 'Creating plot of MAE vs. descriptors...', + 'WORKFLOW') + num_add = [e[0] for e in errors] + maes = [e[1] for e in errors] + opt_num = len(desc) + plt.clf() + plt.rcParams['font.family'] = 'Times New Roman' + plt.plot(num_add, maes, c='blue') + plt.axvline(x=opt_num, c='red', linestyle='--') + plt.xlabel('Number of Descriptors as ANN Input Variables') + plt.ylabel('Median Absolute Error of {} Predictions'.format(prop_abvr)) + plt.savefig(db_name.replace('.csv', '_desc_curve.png')) + logger.log('info', 'Created plot of MAE vs. descriptors', 'WORKFLOW') + + # Tune ANN hyperparameters according to validation set performance + logger.log('info', 'Tuning ANN hyperparameters...', 'WORKFLOW') + config = default_config() + config = tune_hyperparameters(df, config, 25, 10, num_processes, + eval_set='valid', eval_fn='med_abs_error', + epochs=300, validate=False) + config['epochs'] = default_config()['epochs'] + config_filename = db_name.replace('.csv', '.yml') + save_config(config, config_filename) + logger.log('info', 'Tuned ANN hyperparameters', 'WORKFLOW') + logger.log('info', '\tLearning rate: {}'.format(config['learning_rate']), + 'WORKFLOW') + logger.log('info', '\tLR decay: {}'.format(config['decay']), 'WORKFLOW') + logger.log('info', '\tBatch size: {}'.format(config['batch_size']), + 'WORKFLOW') + logger.log('info', '\tPatience: {}'.format(config['patience']), 'WORKFLOW') + logger.log('info', '\tHidden layers: {}'.format(config['hidden_layers']), + 'WORKFLOW') + + # Create Model + logger.log('info', 'Generating ANN...', 'WORKFLOW') + sv = Server(db_name.replace('.csv', '.yml'), num_processes=num_processes) + sv.load_data(db_name.replace('.csv', '_opt.csv')) + sv.create_project(db_name.replace('.csv', ''), 5, 25) + sv.train(validate=True, selection_set='valid', + selection_fn='med_abs_error') + logger.log('info', 'ANN Generated', 'WORKFLOW') + logger.log('info', 'Measuring ANN performance...', 'WORKFLOW') + preds_learn = sv.use(dset='learn') + preds_valid = sv.use(dset='valid') + preds_test = sv.use(dset='test') + learn_errors = sv.errors('r2', 'med_abs_error', dset='learn') + valid_errors = sv.errors('r2', 'med_abs_error', dset='valid') + test_errors = sv.errors('r2', 'med_abs_error', dset='test') + logger.log('info', 'Measured ANN performance', 'WORKFLOW') + logger.log('info', '\tLearning set:\t R2: {}\t MAE: {}'.format( + learn_errors['r2'], learn_errors['med_abs_error']), 'WORKFLOW') + logger.log('info', '\tValidation set:\t R2: {}\t MAE: {}'.format( + valid_errors['r2'], valid_errors['med_abs_error']), 'WORKFLOW') + logger.log('info', '\tTesting set:\t R2: {}\t MAE: {}'.format( + test_errors['r2'], test_errors['med_abs_error']), 'WORKFLOW') + sv.save_project(del_candidates=True) + + if create_plots: + logger.log('info', 'Creating parity plot...', 'WORKFLOW') + plt.clf() + parity_plot = ParityPlot( + '', + 'Experimental {} Value'.format(prop_abvr), + 'Predicted {} Value'.format(prop_abvr) + ) + parity_plot.add_series(sv._sets.learn_y, preds_learn, 'Learning Set', + 'blue') + parity_plot.add_series(sv._sets.valid_y, preds_valid, 'Validation Set', + 'green') + parity_plot.add_series(sv._sets.test_y, preds_test, 'Test Set', 'red') + parity_plot.add_error_bars(test_errors['med_abs_error'], 'Test MAE') + parity_plot._add_label('Test $R^2$', test_errors['r2']) + parity_plot._add_label('Validation MAE', valid_errors['med_abs_error']) + parity_plot._add_label('Validation $R^2$', valid_errors['r2']) + parity_plot._add_label('Learning MAE', learn_errors['med_abs_error']) + parity_plot._add_label('Learning $R^2$', learn_errors['r2']) + parity_plot.save(db_name.replace('.csv', '_parity.png')) + logger.log('info', 'Created parity plot', 'WORKFLOW') diff --git a/ecnet/workflows/workflow_utils.py b/ecnet/workflows/workflow_utils.py new file mode 100644 index 0000000..6333306 --- /dev/null +++ b/ecnet/workflows/workflow_utils.py @@ -0,0 +1,121 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# ecnet/workflows/workflow_utils.py +# v.3.3.0 +# Developed in 2020 by Travis Kessler +# +# Functions used by the ECRL workflow +# + +# Stdlib imports +from multiprocessing import Pool, set_start_method +from os import name + +# ECNet imports +from ecnet.utils.data_utils import DataFrame +from ecnet.utils.server_utils import default_config, train_model +from ecnet.tasks.limit_inputs import limit_rforest + + +def prop_range_from_split(db_name: str, data_split: list): + ''' prop_range_from_split: creates learning, validation, test subsets, each + with proportionally equal number of compounds based on experimental value + range + + Args: + db_name (str): name/location of ECNet-formatted database + data_split (list): [learn %, valid %, test %] for all supplied data + ''' + + df = DataFrame(db_name) + for mol in df.data_points: + mol.assignment = 'L' + mol.TARGET = float(mol.TARGET) + df.data_points = sorted(df.data_points, key=lambda m: m.TARGET, + reverse=True) + num_validate = int(len(df) / (data_split[1] * len(df.data_points))) + num_test = int(len(df) / (data_split[2] * len(df.data_points))) + for idx, mol in enumerate(df.data_points): + if (idx + 1) % num_validate == 0: + mol.assignment = 'V' + if (idx + 3) % num_test == 0: + mol.assignment = 'T' + if len([m for m in df.data_points if m.assignment == 'V']) == 0: + raise ValueError('Data split resulted in empty validation set') + if len([m for m in df.data_points if m.assignment == 'T']) == 0: + raise ValueError('Data split resulted in empty test set') + df.data_points = sorted(df.data_points, key=lambda m: m.id) + df.save(db_name) + + +def find_optimal_num_inputs(db_name: str, eval_set: str, + num_processes: int) -> tuple: + ''' find_optimal_num_inputs: find the optimal number of input variables, + return names of variables; optimal number of variables produces lowest + median absolute error; variables added 25 at a time, according to RFR + importance score (most-to-least important) + + Args: + db_name (str): name/location of ECNet-formatted database + eval_set (str): set to evaluate (`learn`, `valid`, `train`, `test`, + None (all)) + num_processes (int): number of concurrent processes to run for RFR, + training + + Returns: + tuple: ([addition1, error1, ..., additionN, errorN], opt_desc) + ''' + + conf = default_config() + conf['epochs'] = 300 + df = DataFrame(db_name) + df.create_sets() + conf['batch_size'] = len(df.learn_set) + desc = limit_rforest(df, len(df._input_names), num_processes=num_processes, + eval_set=eval_set) + desc = [d[0] for d in desc] + + errors = [] + if num_processes > 1: + if name != 'nt': + set_start_method('spawn', force=True) + train_pool = Pool(processes=num_processes) + + for d_idx in range(0, len(desc), 10): + if d_idx >= len(desc) - 1: + to_use = desc[:] + else: + to_use = desc[: d_idx + 1] + df = DataFrame(db_name) + df.set_inputs(to_use) + df.create_sets() + sets = df.package_sets() + + if num_processes > 1: + errors.append([d_idx, train_pool.apply_async( + train_model, [ + sets, conf, eval_set, 'med_abs_error', False, '_.h5', + False, False + ] + )]) + else: + errors.append([d_idx, train_model( + sets, conf, eval_set, 'med_abs_error', False, '_.h5', + False, False + )[0]]) + + if num_processes > 1: + train_pool.close() + train_pool.join() + for idx, err in enumerate(errors): + errors[idx][1] = err[1].get()[0] + + min_error = errors[0][1] + opt_num_desc = 1 + for err in errors[1:]: + if err[1] < min_error: + min_error = err[1] + opt_num_desc = err[0] + + return (errors, desc[: opt_num_desc]) diff --git a/setup.py b/setup.py index 76539f4..540a1b9 100644 --- a/setup.py +++ b/setup.py @@ -1,28 +1,34 @@ from setuptools import setup, find_packages +from sys import argv + +install_requires = [ + 'alvadescpy==0.1.0', + 'colorlogging==0.3.5', + 'ecabc==2.2.3', + 'matplotlib==3.1.2', + 'numpy==1.16.4', + 'padelpy==0.1.6', + 'pyyaml==5.1.1', + 'scikit-learn==0.21.2' +] + +if '--omit_tf' in argv: + argv.remove('--omit_tf') +else: + install_requires.append('tensorflow==2.0.0') setup( name='ecnet', - version='3.2.3', + version='3.3.0', description='UMass Lowell Energy and Combustion Research Laboratory Neural' ' Network Software', - url='http://github.com/tjkessler/ecnet', - author='Travis Kessler, Hernan Gelaf-Romer, Sanskriti Sharma', - author_email='travis.j.kessler@gmail.com,' - ' Hernan_Gelafromer@student.uml.edu,' - ' Sanskriti_Sharma@student.uml.edu', + url='https://github.com/ecrl/ecnet', + author='Travis Kessler, John Hunter Mack', + author_email='Travis_Kessler@student.uml.edu,' + ' Hunter_Mack@uml.edu', license='MIT', packages=find_packages(), - install_requires=[ - 'alvadescpy==0.1.0', - 'colorlogging==0.3.5', - 'ecabc==2.2.3', - 'keras==2.2.4', - 'matplotlib==3.1.0', - 'numpy==1.16.4', - 'padelpy==0.1.6', - 'pyyaml==5.1.1', - 'scikit-learn==0.21.2', - 'tensorflow==1.13.1' - ], + python_requires='~=3.7', + install_requires=install_requires, zip_safe=False ) diff --git a/tests/models/test_mlp.py b/tests/models/test_mlp.py index 51fd99f..f3420c1 100644 --- a/tests/models/test_mlp.py +++ b/tests/models/test_mlp.py @@ -15,7 +15,8 @@ def test_mlp(self): mlp.add_layer(9, 'relu', 3) mlp.add_layer(6, 'relu') mlp.add_layer(1, 'linear') - mlp.fit(array([[1, 1, 1], [0, 0, 0]]), array([[1], [0]]), epochs=20000) + mlp.fit(array([[1, 1, 1], [0, 0, 0]]), array([[1], [0]]), epochs=2000, + lr=0.01) results = mlp.use(array([[1, 1, 1], [0, 0, 0]])) self.assertAlmostEqual(results[0][0], 1, 3) diff --git a/tests/tasks/test_limit_inputs.py b/tests/tasks/test_limit_inputs.py index 1ef6862..dc4d319 100644 --- a/tests/tasks/test_limit_inputs.py +++ b/tests/tasks/test_limit_inputs.py @@ -23,6 +23,38 @@ def test_limit_rforest(self): df.set_inputs([r[0] for r in result]) self.assertEqual(len(df._input_names), 2) + def test_limit_sets(self): + + print('\nUNIT TEST: limit_sets') + df = DataFrame(DB_LOC) + df.create_sets() + result = limit_rforest(df, 2, eval_set='valid') + self.assertEqual(len(result), 2) + self.assertEqual(len(result[0]), 2) + df.set_inputs([r[0] for r in result]) + self.assertEqual(len(df._input_names), 2) + df = DataFrame(DB_LOC) + df.create_sets() + result = limit_rforest(df, 2, eval_set='train') + self.assertEqual(len(result), 2) + self.assertEqual(len(result[0]), 2) + df.set_inputs([r[0] for r in result]) + self.assertEqual(len(df._input_names), 2) + df = DataFrame(DB_LOC) + df.create_sets() + result = limit_rforest(df, 2, eval_set='test') + self.assertEqual(len(result), 2) + self.assertEqual(len(result[0]), 2) + df.set_inputs([r[0] for r in result]) + self.assertEqual(len(df._input_names), 2) + df = DataFrame(DB_LOC) + df.create_sets() + result = limit_rforest(df, 2, eval_set=None) + self.assertEqual(len(result), 2) + self.assertEqual(len(result[0]), 2) + df.set_inputs([r[0] for r in result]) + self.assertEqual(len(df._input_names), 2) + def test_server_limit(self): print('\nUNIT TEST: limit_rforest (Server)') diff --git a/tests/utils/test_server_utils.py b/tests/utils/test_server_utils.py index 452c423..cbaa0fd 100644 --- a/tests/utils/test_server_utils.py +++ b/tests/utils/test_server_utils.py @@ -30,17 +30,18 @@ def test_default_config(self): self.assertEqual( dc, { 'epochs': 3000, - 'learning_rate': 0.001, + 'learning_rate': 0.01, 'beta_1': 0.9, 'beta_2': 0.999, - 'epsilon': 0.0000001, + 'epsilon': 1e-8, 'decay': 0.0, 'hidden_layers': [ [32, 'relu'], [32, 'relu'] ], 'output_activation': 'linear', - 'batch_size': 32 + 'batch_size': 32, + 'patience': 128 } ) @@ -126,17 +127,18 @@ def test_open_save_config(self): server_utils.open_config('config.yml'), { 'epochs': 3000, - 'learning_rate': 0.001, + 'learning_rate': 0.01, 'beta_1': 0.9, 'beta_2': 0.999, - 'epsilon': 0.0000001, + 'epsilon': 1e-8, 'decay': 0.0, 'hidden_layers': [ [32, 'relu'], [32, 'relu'] ], 'output_activation': 'linear', - 'batch_size': 32 + 'batch_size': 32, + 'patience': 128 } ) remove('config.yml') @@ -162,7 +164,7 @@ def test_train_model(self): pd = df.package_sets() config = server_utils.default_config() config['epochs'] = 100 - r_squared = server_utils.train_model( + _ = server_utils.train_model( pd, config, 'test', 'r2', filename='test_train.h5' ) self.assertTrue(exists('test_train.h5'))