modelsDM3d.py

import numpy as np
import torch
from torch import nn, einsum
import torch.nn.functional as F
from inspect import isfunction
from functools import partial
from einops import rearrange, reduce
from einops.layers.torch import Rearrange
from torchviz import make_dot

import math
#adapted from https://nn.labml.ai/diffusion/ddpm/unet.html
#https://huggingface.co/blog/annotated-diffusion

def exists(x):
    return x is not None

def default(val, d):
    if exists(val):
        return val
    return d() if isfunction(d) else d

class Residual(nn.Module):
    def __init__(self, fn):
        super().__init__()
        self.fn = fn

    def forward(self, x, *args, **kwargs):
        return self.fn(x, *args, **kwargs) + x

def Upsample(dim):
    return nn.ConvTranspose3d(dim, dim, 4, 2, 1)

def Downsample(dim):
    return nn.Conv3d(dim, dim, 4, 2, 1)

class SinusoidalPositionEmbeddings(nn.Module):
    def __init__(self, dim):
        super().__init__()
        self.dim = dim

    def forward(self, time):
        device = time.device
        half_dim = self.dim // 2
        embeddings = math.log(10000) / (half_dim - 1)
        embeddings = torch.exp(torch.arange(half_dim, device=device) * -embeddings)
        embeddings = time[:, None] * embeddings[None, :]
        embeddings = torch.cat((embeddings.sin(), embeddings.cos()), dim=-1)
        return embeddings

class Block(nn.Module):
    def __init__(self, dim, dim_out, groups=8):
        super().__init__()
        self.proj = nn.Conv3d(dim, dim_out, 3, padding=1)
        self.norm = nn.GroupNorm(groups, dim_out)
        self.act = nn.SiLU()

    def forward(self, x, scale_shift=None):
        x = self.proj(x)
        x = self.norm(x)

        if exists(scale_shift):
            scale, shift = scale_shift
            x = x * (scale + 1) + shift

        x = self.act(x)
        return x

class ResnetBlock(nn.Module):
    """https://arxiv.org/abs/1512.03385"""

    def __init__(self, dim, dim_out, *, time_emb_dim=None, groups=8):
        super().__init__()
        self.mlp = (
            nn.Sequential(nn.SiLU(), nn.Linear(time_emb_dim, dim_out))
            if exists(time_emb_dim)
            else None
        )

        self.block1 = Block(dim, dim_out, groups=groups)
        self.block2 = Block(dim_out, dim_out, groups=groups)
        self.res_conv = nn.Conv3d(dim, dim_out, 1) if dim != dim_out else nn.Identity()

    def forward(self, x, time_emb=None):
        h = self.block1(x)

        if exists(self.mlp) and exists(time_emb):
            time_emb = self.mlp(time_emb)
            h = rearrange(time_emb, "b c -> b c 1 1") + h

        h = self.block2(h)
        return h + self.res_conv(x)

class ConvNextBlock(nn.Module):
    """https://arxiv.org/abs/2201.03545"""

    def __init__(self, dim, dim_out, *, time_emb_dim=None, mult=2, norm=True):
        super().__init__()
        self.mlp = (
            nn.Sequential(nn.GELU(), nn.Linear(time_emb_dim, dim))
            if exists(time_emb_dim)
            else None
        )

        self.ds_conv = nn.Conv3d(dim, dim, 7, padding=3, groups=dim)

        self.net = nn.Sequential(
            nn.GroupNorm(1, dim) if norm else nn.Identity(),
            nn.Conv3d(dim, dim_out * mult, 3, padding=1),
            nn.GELU(),
            nn.GroupNorm(1, dim_out * mult),
            nn.Conv3d(dim_out * mult, dim_out, 3, padding=1),
        )

        self.res_conv = nn.Conv3d(dim, dim_out, 1) if dim != dim_out else nn.Identity()

    def forward(self, x, time_emb=None):
        h = self.ds_conv(x)

        if exists(self.mlp) and exists(time_emb):
            assert exists(time_emb), "time embedding must be passed in"
            condition = self.mlp(time_emb)
            h = h + rearrange(condition, "b c -> b c 1 1 1")

        h = self.net(h)
        return h + self.res_conv(x)

class Attention(nn.Module):
    def __init__(self, dim, heads=4, dim_head=32):
        super().__init__()
        self.scale = dim_head ** -0.5
        self.heads = heads
        hidden_dim = dim_head * heads
        self.to_qkv = nn.Conv3d(dim, hidden_dim * 3, 1, bias=False)
        self.to_out = nn.Conv3d(hidden_dim, dim, 1)

    def forward(self, x):
        b, c, h, w, l= x.shape
        qkv = self.to_qkv(x).chunk(3, dim=1)
        q, k, v = map(
            lambda t: rearrange(t, "b (h c) x y z -> b h c (x y z)", h=self.heads), qkv
        )
        q = q * self.scale

        sim = einsum("b h d i, b h d j -> b h i j", q, k)
        sim = sim - sim.amax(dim=-1, keepdim=True).detach()
        attn = sim.softmax(dim=-1)

        out = einsum("b h i j, b h d j -> b h i d", attn, v)
        out = rearrange(out, "b h (x y z) d -> b (h d) x y z", x=h, y=w, z=l)
        return self.to_out(out)

class LinearAttention(nn.Module):
    def __init__(self, dim, heads=4, dim_head=32):
        super().__init__()
        self.scale = dim_head ** -0.5
        self.heads = heads
        hidden_dim = dim_head * heads
        self.to_qkv = nn.Conv3d(dim, hidden_dim * 3, 1, bias=False)

        self.to_out = nn.Sequential(nn.Conv3d(hidden_dim, dim, 1),
                                    nn.GroupNorm(1, dim))

    def forward(self, x):
        b, c, h, w, l = x.shape
        qkv = self.to_qkv(x).chunk(3, dim=1)
        q, k, v = map(
            lambda t: rearrange(t, "b (h c) x y z-> b h c (x y z)", h=self.heads), qkv
        )

        q = q.softmax(dim=-2)
        k = k.softmax(dim=-1)

        q = q * self.scale
        context = torch.einsum("b h d n, b h e n -> b h d e", k, v)

        out = torch.einsum("b h d e, b h d n -> b h e n", context, q)
        out = rearrange(out, "b h c (x y z) -> b (h c) x y z", h=self.heads, x=h, y=w, z=l)
        return self.to_out(out)

class PreNorm(nn.Module):
    def __init__(self, dim, fn):
        super().__init__()
        self.fn = fn
        self.norm = nn.GroupNorm(1, dim)

    def forward(self, x):
        x = self.norm(x)
        return self.fn(x)

class Unet(nn.Module):
    def __init__(
            self,
            dim,
            init_dim=None,
            out_dim=None,
            dim_mults=(1, 2, 4, 8),
            channels=3,
            with_time_emb=True,
            resnet_block_groups=8,
            use_convnext=True,
            convnext_mult=2,
    ):
        super().__init__()

        # determine dimensions
        self.channels = channels

        init_dim = default(init_dim, dim // 3 * 2)
        self.init_conv = nn.Conv3d(channels, init_dim, 7, padding=3)

        dims = [init_dim, *map(lambda m: dim * m, dim_mults)]
        print(dims)
        in_out = list(zip(dims[:-1], dims[1:]))

        if use_convnext:
            block_klass = partial(ConvNextBlock, mult=convnext_mult)
        else:
            block_klass = partial(ResnetBlock, groups=resnet_block_groups)

        # time embeddings
        if with_time_emb:
            time_dim = dim * 4
            self.time_mlp = nn.Sequential(
                SinusoidalPositionEmbeddings(dim),
                nn.Linear(dim, time_dim),
                nn.GELU(),
                nn.Linear(time_dim, time_dim),
            )
        else:
            time_dim = None
            self.time_mlp = None

        # layers
        self.downs = nn.ModuleList([])
        self.ups = nn.ModuleList([])
        num_resolutions = len(in_out)

        for ind, (dim_in, dim_out) in enumerate(in_out):
            is_last = ind >= (num_resolutions - 1)

            self.downs.append(
                nn.ModuleList(
                    [
                        block_klass(dim_in, dim_out, time_emb_dim=time_dim),
                        block_klass(dim_out, dim_out, time_emb_dim=time_dim),
                        Residual(PreNorm(dim_out, LinearAttention(dim_out))),
                        Downsample(dim_out) if not is_last else nn.Identity(),
                    ]
                )
            )

        mid_dim = dims[-1]
        self.mid_block1 = block_klass(mid_dim, mid_dim, time_emb_dim=time_dim)
        self.mid_attn = Residual(PreNorm(mid_dim, Attention(mid_dim)))
        self.mid_block2 = block_klass(mid_dim, mid_dim, time_emb_dim=time_dim)

        for ind, (dim_in, dim_out) in enumerate(reversed(in_out[1:])):
            is_last = ind >= (num_resolutions - 1)

            self.ups.append(
                nn.ModuleList(
                    [
                        block_klass(dim_out * 2, dim_in, time_emb_dim=time_dim),
                        block_klass(dim_in, dim_in, time_emb_dim=time_dim),
                        Residual(PreNorm(dim_in, LinearAttention(dim_in))),
                        Upsample(dim_in) if not is_last else nn.Identity(),
                    ]
                )
            )

        out_dim = default(out_dim, channels)
        #out_dim = 1
        self.final_conv = nn.Sequential(
            block_klass(dim, dim), nn.Conv3d(dim, out_dim, 1)
        )

    def forward(self, x, condition, time):
        if condition is not None:
            x = torch.cat([x, condition], dim=1)

        x = self.init_conv(x)

        t = self.time_mlp(time) if exists(self.time_mlp) else None

        h = []

        # downsample
        for block1, block2, attn, downsample in self.downs:
            x = block1(x, t)
            x = block2(x, t)
            x = attn(x)
            h.append(x)
            x = downsample(x)

        # bottleneck
        x = self.mid_block1(x, t)
        x = self.mid_attn(x)
        x = self.mid_block2(x, t)

        # upsample
        for block1, block2, attn, upsample in self.ups:
            x = torch.cat((x, h.pop()), dim=1)
            x = block1(x, t)
            x = block2(x, t)
            x = attn(x)
            x = upsample(x)

        return self.final_conv(x)

if __name__ == '__main__':
    device = torch.device('cuda:0')

    image_size = 8
    channels = 4

    model = Unet(
        dim=image_size,
        channels=channels,
        dim_mults=(1, 2, 4,),
        init_dim=None,
        out_dim=1,
    )
    model.to(device)

    batch_size = 1
    dim1 = 64
    dim2 = 64
    dim3 = 64

    x = torch.randn((batch_size, 1, dim1, dim2, dim3)).to(device)
    y = torch.randn((batch_size, 1, dim1, dim2, dim3)).to(device)
    z = torch.randn((batch_size, 1, dim1, dim2, dim3)).to(device)
    t = torch.randn((1)).to(device)
    out = model(x, torch.cat([x, y, z], dim=1), t)
    print("outshape", out.shape)
    #out = model(x, t)

    # a = make_dot(out.mean(), params=dict(model.named_parameters()), show_attrs=True, show_saved=True)
    # a.view()


    #xNoisy = torch.randn((1, 1, 96, 100, 144)).to(device)

    #print(torch.cat([xNoisy, xNoisy, xNoisy], dim=1).shape)

    # t = torch.randn((1)).to(device)
    # out = model(xNoisy, t)
    # print(out.shape)
    # torch.Size([128, 1, 28, 28])
    # t
    # torch.Size([128])


    # #pass
    # model = AttentionUNET(2, 1)
    # #print(model.first_layer)
    # # model = Discriminator(6, True)
    # x = torch.randn((4, 1, 96, 160, 160))
    # y = torch.randn((4, 1, 96, 160, 160))
    # t = torch.randn((4, 1, 96, 160, 160))
    # # #
    # device = torch.device('cuda:0')
    # x = x.to(device)
    # y = y.to(device)
    # t = t.to(device)
    # model.to(device)
    # #
    # out = model(x, y, t)