From 1aa2f541eee03c44c1e17cc8618cf080c1c01f19 Mon Sep 17 00:00:00 2001 From: Slimmer bot Date: Sun, 1 Sep 2024 02:05:45 +0000 Subject: [PATCH] Actions - slim updated --- external-dev/aopo-slim.owl | 8 +-- external-dev/bao-slim.owl | 2 +- external-dev/bfo-slim.owl | 2 +- external-dev/bto-slim.owl | 2 +- external-dev/ccont-slim.owl | 2 +- external-dev/chebi-slim.owl | 6 +-- external-dev/cheminf-slim.owl | 2 +- external-dev/chmo-slim.owl | 2 +- external-dev/clo-slim.owl | 4 +- external-dev/efo-slim.owl | 94 ++++++++++++++++++++++++++++++++--- external-dev/envo-slim.owl | 2 +- external-dev/fabio-slim.owl | 2 +- external-dev/go-slim.owl | 2 +- external-dev/iao-slim.owl | 2 +- external-dev/msio-slim.owl | 2 +- external-dev/ncit-slim.owl | 2 +- external-dev/npo-slim.owl | 2 +- external-dev/oae-slim.owl | 2 +- external-dev/obcs-slim.owl | 2 +- external-dev/obi-slim.owl | 2 +- external-dev/pato-slim.owl | 2 +- external-dev/sio-slim.owl | 2 +- external-dev/uberon-slim.owl | 9 +++- external-dev/uo-slim.owl | 2 +- 24 files changed, 123 insertions(+), 36 deletions(-) diff --git a/external-dev/aopo-slim.owl b/external-dev/aopo-slim.owl index 36a112b5..2a75ffc6 100644 --- a/external-dev/aopo-slim.owl +++ b/external-dev/aopo-slim.owl @@ -44,15 +44,15 @@ https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl Slimmer - 2024-08-01 01:45:03 - 27:06:2024 21:25 + 2024-09-01 01:57:59 + 27:07:2024 19:59 chebi_ontology human_phenotype 1.2 has_part chebi Author: ChEBI curation team - ChEBI Release version 235 + ChEBI Release version 236 ChEBI subsumes and replaces the Chemical Ontology first Contact: Stephan Schurer @@ -102,7 +102,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc 2.8.6 2.8.8 2.8.9 - 2024-07-01 + 2024-08-13 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/bao-slim.owl b/external-dev/bao-slim.owl index 02ff85e0..d6560633 100644 --- a/external-dev/bao-slim.owl +++ b/external-dev/bao-slim.owl @@ -24,7 +24,7 @@ http://bioassayontology.org/bao/bao_complete_merged.owl Slimmer - 2024-08-01 01:45:10 + 2024-09-01 01:58:07 Contact: Stephan Schurer stephan dot schurer at gmail dot com diff --git a/external-dev/bfo-slim.owl b/external-dev/bfo-slim.owl index 444684e0..205256f2 100644 --- a/external-dev/bfo-slim.owl +++ b/external-dev/bfo-slim.owl @@ -45,7 +45,7 @@ http://purl.obolibrary.org/obo/bfo/classes-only.owl Slimmer - 2024-08-01 01:45:12 + 2024-09-01 01:58:09 The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO ("bfo_classes_only.owl") includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl ("bfo.owl"). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl. If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies. diff --git a/external-dev/bto-slim.owl b/external-dev/bto-slim.owl index 746b9f87..4dd124da 100644 --- a/external-dev/bto-slim.owl +++ b/external-dev/bto-slim.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/bto.owl OBO-Edit 2.3.1 Slimmer - 2024-08-01 01:45:17 + 2024-09-01 01:58:14 23:10:2021 16:56 BrendaTissueOBO 1.2 diff --git a/external-dev/ccont-slim.owl b/external-dev/ccont-slim.owl index 3d1b76bd..1297e4ab 100644 --- a/external-dev/ccont-slim.owl +++ b/external-dev/ccont-slim.owl @@ -15,7 +15,7 @@ https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl Matthias Ganzinger, matthias.ganzinger@med.uni-heidelberg.de Slimmer - 2024-08-01 01:45:19 + 2024-09-01 01:58:15 cell culture ontology (CCONT) 1.1 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/chebi-slim.owl b/external-dev/chebi-slim.owl index d56840ba..c8761ef2 100644 --- a/external-dev/chebi-slim.owl +++ b/external-dev/chebi-slim.owl @@ -17,13 +17,13 @@ http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo Slimmer - 2024-08-01 01:46:07 - 27:06:2024 21:25 + 2024-09-01 01:59:54 + 27:07:2024 19:59 chebi_ontology 1.2 chebi Author: ChEBI curation team - ChEBI Release version 235 + ChEBI Release version 236 ChEBI subsumes and replaces the Chemical Ontology first For any queries contact chebi-help@ebi.ac.uk developed by Michael Ashburner & Pankaj Jaiswal. diff --git a/external-dev/cheminf-slim.owl b/external-dev/cheminf-slim.owl index fd3618f5..936562b2 100644 --- a/external-dev/cheminf-slim.owl +++ b/external-dev/cheminf-slim.owl @@ -80,7 +80,7 @@ http://creativecommons.org/publicdomain/zero/1.0/ http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl Slimmer - 2024-08-01 01:45:21 + 2024-09-01 01:58:18 An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO Document containing upporting external terms IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999 diff --git a/external-dev/chmo-slim.owl b/external-dev/chmo-slim.owl index 5170f284..8dfdeab3 100644 --- a/external-dev/chmo-slim.owl +++ b/external-dev/chmo-slim.owl @@ -19,7 +19,7 @@ http://purl.obolibrary.org/obo/chmo.owl Slimmer - 2024-08-01 01:46:12 + 2024-09-01 01:59:59 1.2 batchelorc This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/clo-slim.owl b/external-dev/clo-slim.owl index 57be2f68..4a023cc0 100644 --- a/external-dev/clo-slim.owl +++ b/external-dev/clo-slim.owl @@ -39,9 +39,9 @@ http://purl.obolibrary.org/obo/cl.owl Slimmer - 2024-08-01 01:46:25 + 2024-09-01 02:00:11 See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, university at buffalo. - 2024-07-10 + 2024-08-16 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/efo-slim.owl b/external-dev/efo-slim.owl index bcc0197c..e8f7638d 100644 --- a/external-dev/efo-slim.owl +++ b/external-dev/efo-slim.owl @@ -55,9 +55,9 @@ License. www.apache.org/licenses/LICENSE-2.0 http://www.ebi.ac.uk/efo/efo.owl Slimmer - 2024-08-01 01:47:19 - 2024-07-15 - 3.68.0 + 2024-09-01 02:01:08 + 2024-08-15 + 3.69.0 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. @@ -29409,6 +29409,7 @@ http://humupd.oxfordjournals.org/content/13/2/103.full + The blood pressure during the contraction of the left ventricle of the heart. Dani Welter @@ -29427,6 +29428,7 @@ http://humupd.oxfordjournals.org/content/13/2/103.full + The blood pressure after the contraction of the heart while the chambers of the heart refill with blood. Dani Welter @@ -29445,6 +29447,7 @@ http://humupd.oxfordjournals.org/content/13/2/103.full + The mean pressure of the blood within the arterial circulation. The arterial pressure may be directly measured by insertion of an intra-arterial catheter connected to a transducer. The mean arterial pressure (MAP) can be calculated by subsequent analysis of the waveform. MAP can be approximated without an invasive procedure using the following formula: diastolic pressure plus 1/3 of the pulse pressure, where pulse pressure is systolic pressure - diastolic pressure. Dani Welter @@ -56709,7 +56712,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var Joannella Morales true PMID:23823483 - adipic acid mesurement + adipic acid measurement @@ -57347,7 +57350,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var Joannella Morales true PMID:23823483 - hypoxanthine mesurement + hypoxanthine measurement @@ -57610,7 +57613,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var Joannella Morales true PMID:23823483 - pantothenic acid mesurement + pantothenic acid measurement @@ -101457,6 +101460,42 @@ of diseased coronary vessels at the time of a catheterization procedure. The var + + + + + + An immortalized human erythroid progenitor cell line. + Zoe May Pendlington + 2024-08-07T12:56:51Z + RRID:CVCL_VI06 + HUDEP2 + Human Umbilical cord blood-Derived Erythroid Progenitor-2 + HUDEP-2 + + + + + An immortalized human erythroid progenitor cell line. + PMID:23533656 + + + + + + + + + + It is the most common clonal somatic alteration in leukocytes of female individuals. + Zoe May Pendlington + 2024-08-14T09:43:25Z + mLOX + mosaic loss of chromosome X measurement + + + + @@ -149850,7 +149889,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var Quantification of visual masking, a phenomenon of visual perception which occurs when the visibility of one image, called a target, is reduced by the presence of another, called a mask. Timing arrangements include forward masking, backward masking, and simultaneous masking. Spatial arrangements include pattern masking and metacontrast. Visual masking deficits are potential schizophrenia endophenotypes. true - visual masking mesurement + visual masking measurement @@ -154961,6 +155000,47 @@ of diseased coronary vessels at the time of a catheterization procedure. The var + + + + + + Quantification of one or more antibodies to the hepatitis E virus in a sample. + PMID:37664632 + anti-HEV antibody measurement + To be reviewed for replacement with OBA term. + anti-hepatitis E virus antibody measurement + + + + + + + + + + Quantification of one or more antibodies to the superantigen toxic shock syndrome toxin-1 (TSST-1) produced by Staphylococcus aureus in a sample. + PMID:37731490 + To be reviewed for replacement with OBA term. + anti-TSST-1 antibody measurement + + + + + + + + + + Quantification of one or more antibodies to the hepatitis B virus anitgen in a sample. + PMID:38626723 + anti-HBV antibody measurement + To be reviewed for replacement with OBA term. + anti-hepatitis B virus antibody measurement + + + + + + + + + + diff --git a/external-dev/uo-slim.owl b/external-dev/uo-slim.owl index 34aba06f..694001f7 100644 --- a/external-dev/uo-slim.owl +++ b/external-dev/uo-slim.owl @@ -12,7 +12,7 @@ http://purl.obolibrary.org/obo/uo.owl Slimmer - 2024-08-01 01:51:11 + 2024-09-01 02:04:52 2023-05-25 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.