diff --git a/external-dev/aopo-slim.owl b/external-dev/aopo-slim.owl
index 8ec57d57..538c0dc5 100644
--- a/external-dev/aopo-slim.owl
+++ b/external-dev/aopo-slim.owl
@@ -44,7 +44,7 @@
https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl
Slimmer
- 2024-03-21 14:05:33
+ 2024-03-21 16:20:13
27:02:2024 20:11
chebi_ontology
human_phenotype
diff --git a/external-dev/bao-slim.owl b/external-dev/bao-slim.owl
index bb25238a..e5d28881 100644
--- a/external-dev/bao-slim.owl
+++ b/external-dev/bao-slim.owl
@@ -24,7 +24,7 @@
http://bioassayontology.org/bao/bao_complete_merged.owl
Slimmer
- 2024-03-21 14:05:46
+ 2024-03-21 16:20:22
Contact:
Stephan Schurer
stephan dot schurer at gmail dot com
diff --git a/external-dev/bfo-slim.owl b/external-dev/bfo-slim.owl
index 61dc3802..524ef6f2 100644
--- a/external-dev/bfo-slim.owl
+++ b/external-dev/bfo-slim.owl
@@ -45,7 +45,7 @@
http://purl.obolibrary.org/obo/bfo/classes-only.owl
Slimmer
- 2024-03-21 14:05:49
+ 2024-03-21 16:20:24
The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO ("bfo_classes_only.owl") includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl ("bfo.owl"). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.
If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies.
diff --git a/external-dev/bto-slim.owl b/external-dev/bto-slim.owl
index 68799474..c3cbaab0 100644
--- a/external-dev/bto-slim.owl
+++ b/external-dev/bto-slim.owl
@@ -20,7 +20,7 @@
http://purl.obolibrary.org/obo/bto.owl
OBO-Edit 2.3.1
Slimmer
- 2024-03-21 14:05:54
+ 2024-03-21 16:20:29
23:10:2021 16:56
BrendaTissueOBO
1.2
diff --git a/external-dev/ccont-slim.owl b/external-dev/ccont-slim.owl
index cb8af263..bb55b956 100644
--- a/external-dev/ccont-slim.owl
+++ b/external-dev/ccont-slim.owl
@@ -15,7 +15,7 @@
https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl
Matthias Ganzinger, matthias.ganzinger@med.uni-heidelberg.de
Slimmer
- 2024-03-21 14:05:56
+ 2024-03-21 16:20:31
cell culture ontology (CCONT)
1.1
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/chebi-slim.owl b/external-dev/chebi-slim.owl
index 2b30b89b..7d392a95 100644
--- a/external-dev/chebi-slim.owl
+++ b/external-dev/chebi-slim.owl
@@ -17,7 +17,7 @@
http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo
Slimmer
- 2024-03-21 14:08:30
+ 2024-03-21 16:22:23
27:02:2024 20:11
chebi_ontology
1.2
diff --git a/external-dev/cheminf-slim.owl b/external-dev/cheminf-slim.owl
index 47152a41..ae55bf68 100644
--- a/external-dev/cheminf-slim.owl
+++ b/external-dev/cheminf-slim.owl
@@ -79,7 +79,7 @@
http://creativecommons.org/publicdomain/zero/1.0/
http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl
Slimmer
- 2024-03-21 14:06:00
+ 2024-03-21 16:20:34
An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO
Document containing upporting external terms
IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999
diff --git a/external-dev/chmo-slim.owl b/external-dev/chmo-slim.owl
index 7d321d7e..091ae541 100644
--- a/external-dev/chmo-slim.owl
+++ b/external-dev/chmo-slim.owl
@@ -19,7 +19,7 @@
http://purl.obolibrary.org/obo/chmo.owl
Slimmer
- 2024-03-21 14:08:36
+ 2024-03-21 16:22:29
1.2
batchelorc
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/clo-slim.owl b/external-dev/clo-slim.owl
index 7548fa42..55bcfcee 100644
--- a/external-dev/clo-slim.owl
+++ b/external-dev/clo-slim.owl
@@ -45,7 +45,7 @@
http://purl.obolibrary.org/obo/cl.owl
Slimmer
- 2024-03-21 14:08:49
+ 2024-03-21 16:22:41
See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo.
2024-02-13
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/efo-slim.owl b/external-dev/efo-slim.owl
index 367967b5..d5e9326e 100644
--- a/external-dev/efo-slim.owl
+++ b/external-dev/efo-slim.owl
@@ -55,7 +55,7 @@ License.
www.apache.org/licenses/LICENSE-2.0
http://www.ebi.ac.uk/efo/efo.owl
Slimmer
- 2024-03-21 14:09:53
+ 2024-03-21 16:24:21
2024-03-18
3.64.0
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/envo-slim.owl b/external-dev/envo-slim.owl
index d811dffd..aa2a9556 100644
--- a/external-dev/envo-slim.owl
+++ b/external-dev/envo-slim.owl
@@ -35,7 +35,7 @@
https://github.com/EnvironmentOntology/envo/
https://github.com/EnvironmentOntology/envo/issues/
Slimmer
- 2024-03-21 14:10:01
+ 2024-03-21 16:24:27
ENVO
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl>) VersionIRI(<null>))) [Axioms: 679 Logical Axioms: 119]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl>) VersionIRI(<null>))) [Axioms: 206 Logical Axioms: 34]
diff --git a/external-dev/fabio-slim.owl b/external-dev/fabio-slim.owl
index ab1abf8a..eabb793f 100644
--- a/external-dev/fabio-slim.owl
+++ b/external-dev/fabio-slim.owl
@@ -33,7 +33,7 @@ FaBiO classes are structured according to the FRBR schema of Works, Expressions,
fabio
http://purl.org/spar/fabio/
Slimmer
- 2024-03-21 14:10:05
+ 2024-03-21 16:24:33
FaBiO, the FRBR-aligned Bibliographic Ontology, is an ontology for recording and publishing on the Semantic Web bibliographic records of scholarly endeavours. It forms part of SPAR, a suite of Semantic Publishing and Referencing Ontologies. Other SPAR ontologies are described at http://purl.org/spar/.
This ontology is available at http://purl.org/spar/fabio, and uses the namespace prefix fabio.
diff --git a/external-dev/go-slim.owl b/external-dev/go-slim.owl
index b3ead82b..64889cd3 100644
--- a/external-dev/go-slim.owl
+++ b/external-dev/go-slim.owl
@@ -24,7 +24,7 @@
http://purl.obolibrary.org/obo/go.owl
Slimmer
- 2024-03-21 14:10:27
+ 2024-03-21 16:24:55
gene_ontology
1.2
2024-01-17
@@ -735,6 +735,33 @@
+
+
+
+
+
+ Any process that activates or increases the activity of a cysteine-type endopeptidase involved in the apoptotic process.
+ positive regulation of caspase activity
+ up regulation of caspase activity
+ up-regulation of caspase activity
+ upregulation of caspase activity
+ activation of caspase activity
+ stimulation of caspase activity
+ biological_process
+ GO:0043280
+
+ positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
+
+
+
+
+ Any process that activates or increases the activity of a cysteine-type endopeptidase involved in the apoptotic process.
+ GOC:jl
+ GOC:mtg_apoptosis
+
+
+
+
@@ -761,6 +788,33 @@
+
+
+
+
+
+ Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
+ GO:0051242
+ positive regulation of cellular physiological process
+ up regulation of cellular process
+ up-regulation of cellular process
+ upregulation of cellular process
+ activation of cellular process
+ stimulation of cellular process
+ biological_process
+ GO:0048522
+
+ positive regulation of cellular process
+
+
+
+
+ Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
+ GOC:jid
+
+
+
+
@@ -789,12 +843,6 @@
GO:0051494
negative regulation of cytoskeleton organization
-
-
-
- Any process that stops, prevents, or reduces the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.
- GOC:ai
-
@@ -807,6 +855,12 @@
negative regulation of cytoskeleton organization and biogenesis
GOC:mah
+
+
+
+ Any process that stops, prevents, or reduces the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.
+ GOC:ai
+
diff --git a/external-dev/iao-slim.owl b/external-dev/iao-slim.owl
index 7735e4f8..094402bd 100644
--- a/external-dev/iao-slim.owl
+++ b/external-dev/iao-slim.owl
@@ -57,7 +57,7 @@
http://purl.obolibrary.org/obo/iao.owl
Slimmer
- 2024-03-21 14:10:29
+ 2024-03-21 16:24:57
An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO
IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999
IDs allocated to subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl: IAO_0021000-IAO_0021999
diff --git a/external-dev/msio-slim.owl b/external-dev/msio-slim.owl
index fbb7e2f6..c6596dda 100644
--- a/external-dev/msio-slim.owl
+++ b/external-dev/msio-slim.owl
@@ -181,7 +181,7 @@ http://www.cosmos-fp7.eu/WP2
Slimmer
Daniel Schober
2017-10-19T10:11:26Z
- 2024-03-21 14:13:38
+ 2024-03-21 16:27:59
Please see the project site https://github.com/BFO-ontology/BFO, the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel, the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx. This ontology is generated from a specification at https://github.com/BFO-ontology/BFO/tree/master/src/ontology/owl-group/specification/ and with the code that generates the OWL version in https://github.com/BFO-ontology/BFO/tree/master/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif.
The BSD license on the BFO project site refers to code used to build BFO.
This version (1.1.0) uses the Basic Formal Ontology (BFO) as its top level ontology. We might at some point close the resulting semantic gap by using OBI and IAO as intermediate bridges.
diff --git a/external-dev/ncit-slim.owl b/external-dev/ncit-slim.owl
index 216c8648..c166bf46 100644
--- a/external-dev/ncit-slim.owl
+++ b/external-dev/ncit-slim.owl
@@ -21,7 +21,7 @@
NCI Thesaurus OBO Edition
http://purl.obolibrary.org/obo/ncit.owl
Slimmer
- 2024-03-21 14:12:34
+ 2024-03-21 16:27:06
NCI Thesaurus, a controlled vocabulary in support of NCI administrative and scientific activities. Produced by the Enterprise Vocabulary System (EVS), a project by the NCI Center for Biomedical Informatics and Information Technology. National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, U.S.A.
23.09d
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/npo-slim.owl b/external-dev/npo-slim.owl
index 1854e21a..01b6e568 100644
--- a/external-dev/npo-slim.owl
+++ b/external-dev/npo-slim.owl
@@ -17,7 +17,7 @@
http://purl.bioontology.org/ontology/npo
https://raw.githubusercontent.com/enanomapper/npo/master/npo-inferred.owl
Slimmer
- 2024-03-21 14:12:38
+ 2024-03-21 16:27:09
Inferred version created with Pellet reasoner in Protege editor (v. 4.1)
The NPO was primarily developed by Dennis G. Thomas in collaboration with Nathan A. Baker and Rohit V. Pappu. This development was supported by the NIH through grants U54 CA119342 and U54 HG004028.
2013-05-31 (yyyy-mm-dd)
diff --git a/external-dev/oae-slim.owl b/external-dev/oae-slim.owl
index cbbde7d6..967b5567 100644
--- a/external-dev/oae-slim.owl
+++ b/external-dev/oae-slim.owl
@@ -58,7 +58,7 @@
OAE: Ontology of Adverse Events
http://purl.obolibrary.org/obo/oae.owl
Slimmer
- 2024-03-21 14:12:47
+ 2024-03-21 16:27:16
1.2.47
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/obcs-slim.owl b/external-dev/obcs-slim.owl
index 6b226766..82854ec3 100644
--- a/external-dev/obcs-slim.owl
+++ b/external-dev/obcs-slim.owl
@@ -37,7 +37,7 @@
http://purl.obolibrary.org/obo/obcs.owl
Slimmer
- 2024-03-21 14:12:52
+ 2024-03-21 16:27:20
2023-12-08
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/obi-slim.owl b/external-dev/obi-slim.owl
index b5229f27..6de724e2 100644
--- a/external-dev/obi-slim.owl
+++ b/external-dev/obi-slim.owl
@@ -82,7 +82,7 @@
Ontology for Biomedical Investigations
http://purl.obolibrary.org/obo/obi.owl
Slimmer
- 2024-03-21 14:12:57
+ 2024-03-21 16:27:25
Please cite the OBI consortium http://purl.obolibrary.org/obo/obi where traditional citation is called for. However it is adequate that individual terms be attributed simply by use of the identifying PURL for the term, in projects that refer to them.
2024-01-09
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/pato-slim.owl b/external-dev/pato-slim.owl
index ac684aae..59d41758 100644
--- a/external-dev/pato-slim.owl
+++ b/external-dev/pato-slim.owl
@@ -39,7 +39,7 @@
http://purl.obolibrary.org/obo/pato.owl
Slimmer
- 2024-03-21 14:13:11
+ 2024-03-21 16:27:34
quality
1.2
2023-05-18
diff --git a/external-dev/sio-slim.owl b/external-dev/sio-slim.owl
index 82ed1a07..23f7d47b 100644
--- a/external-dev/sio-slim.owl
+++ b/external-dev/sio-slim.owl
@@ -80,7 +80,7 @@ mailing list: http://groups.google.com/group/sio-ontology
role chains:
'has capability' o 'is realized in' -> 'is participant in'
Slimmer
- 2024-03-21 14:13:14
+ 2024-03-21 16:27:36
http://sio.semanticscience.org
1.59
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/uberon-slim.owl b/external-dev/uberon-slim.owl
index 3d53e883..b29af870 100644
--- a/external-dev/uberon-slim.owl
+++ b/external-dev/uberon-slim.owl
@@ -159,7 +159,7 @@
https://github.com/obophenotype/uberon/issues/
https://lists.sourceforge.net/lists/listinfo/obo-anatomy
Slimmer
- 2024-03-21 14:13:32
+ 2024-03-21 16:27:54
uberon
1.2
AEO
diff --git a/external-dev/uo-slim.owl b/external-dev/uo-slim.owl
index 9c5c6388..02fb969b 100644
--- a/external-dev/uo-slim.owl
+++ b/external-dev/uo-slim.owl
@@ -12,7 +12,7 @@
http://purl.obolibrary.org/obo/uo.owl
Slimmer
- 2024-03-21 14:13:35
+ 2024-03-21 16:27:56
2023-05-25
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.