From e6c9cdffcf50bf28280f7282a6f0091543894e2f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Mon, 15 Apr 2024 13:33:49 +0200
Subject: [PATCH 01/10] Added has exposure route
---
config/ro-term-file.txt | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/config/ro-term-file.txt b/config/ro-term-file.txt
index 9b6f5b4a..854e1ae3 100644
--- a/config/ro-term-file.txt
+++ b/config/ro-term-file.txt
@@ -1 +1,2 @@
-http://purl.obolibrary.org/obo/RO_0000056
\ No newline at end of file
+http://purl.obolibrary.org/obo/RO_0000056
+http://purl.obolibrary.org/obo/RO_0002242 has exposure route
From c6571ffb7da4e29166b773cdff0d4b04f6e3c98f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Mon, 15 Apr 2024 14:04:08 +0200
Subject: [PATCH 02/10] Injection site
---
config/ncit.iris | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/config/ncit.iris b/config/ncit.iris
index d50ac114..8633a168 100644
--- a/config/ncit.iris
+++ b/config/ncit.iris
@@ -117,4 +117,5 @@
+(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C160998 Rat
+(http://purl.obolibrary.org/obo/CL_0000010):http://purl.obolibrary.org/obo/NCIT_C20222 Rat cell line
+(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/NCIT_C12366 bone
-+(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C14271 S cerevisiae
\ No newline at end of file
++(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C14271 S cerevisiae
++(http://www.bioassayontology.org/bao#BAO_0000523):http://purl.obolibrary.org/obo/NCIT_C77680 injection site
From 4539c7a159422ea31e6156c51b36829558d3b631 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Tue, 16 Apr 2024 10:51:26 +0200
Subject: [PATCH 03/10] Update obi.iris
---
config/obi.iris | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/config/obi.iris b/config/obi.iris
index 464c0ffc..1a9fbca3 100644
--- a/config/obi.iris
+++ b/config/obi.iris
@@ -3,4 +3,5 @@
+(http://purl.obolibrary.org/obo/BFO_0000040):http://purl.obolibrary.org/obo/OBI_0100026 organism
+(http://purl.obolibrary.org/obo/IAO_0000100):http://purl.obolibrary.org/obo/OBI_0000251 Cluster
+(http://purl.bioontology.org/ontology/npo#NPO_1436):http://purl.obolibrary.org/obo/OBI_0002488 pipette
-+(http://purl.obolibrary.org/obo/IAO_0000030):http://purl.obolibrary.org/obo/OBI_0002110 digital object identifier
\ No newline at end of file
++(http://purl.obolibrary.org/obo/IAO_0000030):http://purl.obolibrary.org/obo/OBI_0002110 digital object identifier
++D(http://www.ebi.ac.uk/efo/EFO_0000487):http://purl.obolibrary.org/obo/OBI_0600007 administering substance in vivo subclass of exposure (process)
From 940c30b211508783f0e72f680935548ed0cadf8d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Tue, 16 Apr 2024 11:00:09 +0200
Subject: [PATCH 04/10] added trachea
---
config/ncit.iris | 1 +
1 file changed, 1 insertion(+)
diff --git a/config/ncit.iris b/config/ncit.iris
index 8633a168..b6e5c0a0 100644
--- a/config/ncit.iris
+++ b/config/ncit.iris
@@ -119,3 +119,4 @@
+(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/NCIT_C12366 bone
+(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C14271 S cerevisiae
+(http://www.bioassayontology.org/bao#BAO_0000523):http://purl.obolibrary.org/obo/NCIT_C77680 injection site
++(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/NCIT_C12428 trachea
From 2a26478351ec551b4b6f3bcb8a56a42a64b4b84a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Tue, 16 Apr 2024 11:18:03 +0200
Subject: [PATCH 05/10] Added (tracheal) instillation
---
internal-dev/obi-ext.owl | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/internal-dev/obi-ext.owl b/internal-dev/obi-ext.owl
index 92f62545..9453cafe 100644
--- a/internal-dev/obi-ext.owl
+++ b/internal-dev/obi-ext.owl
@@ -647,4 +647,27 @@
+
+
+
+
+
+ Instillation
+ Drop by drop application of a liquid substance into or onto a location in an organism
+
+
+
+
+
+
+
+ Tracheal instillation
+
+
+
+
+
+
+
+
From 1af8c78f1334fbcc6873c67adb0e18fa8967471e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Tue, 16 Apr 2024 11:18:35 +0200
Subject: [PATCH 06/10] Added has target end location
---
config/ro-term-file.txt | 1 +
1 file changed, 1 insertion(+)
diff --git a/config/ro-term-file.txt b/config/ro-term-file.txt
index 854e1ae3..53c7f26d 100644
--- a/config/ro-term-file.txt
+++ b/config/ro-term-file.txt
@@ -1,2 +1,3 @@
http://purl.obolibrary.org/obo/RO_0000056
http://purl.obolibrary.org/obo/RO_0002242 has exposure route
+http://purl.obolibrary.org/obo/NCIT_C12428 has target end location
From b071db1d22d58e2cc6977562bf7eedc08c23647b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Tue, 16 Apr 2024 11:37:33 +0200
Subject: [PATCH 07/10] Added subcutaneous injection via hydrogel
---
internal-dev/obi-ext.owl | 16 +++++++++++++++-
1 file changed, 15 insertions(+), 1 deletion(-)
diff --git a/internal-dev/obi-ext.owl b/internal-dev/obi-ext.owl
index 9453cafe..2b0fca47 100644
--- a/internal-dev/obi-ext.owl
+++ b/internal-dev/obi-ext.owl
@@ -660,7 +660,7 @@
-
+
Tracheal instillation
@@ -670,4 +670,18 @@
+
+
+
+
+
+ subcutaneous injection via hydrogel
+
+
+
+
+
+
+
+
From 337ae54b5a9f4dbf735ff6d4309f6c2884877a58 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Tue, 16 Apr 2024 11:38:01 +0200
Subject: [PATCH 08/10] Added has exposure medium
---
config/ro-term-file.txt | 1 +
1 file changed, 1 insertion(+)
diff --git a/config/ro-term-file.txt b/config/ro-term-file.txt
index 53c7f26d..e1fe8a69 100644
--- a/config/ro-term-file.txt
+++ b/config/ro-term-file.txt
@@ -1,3 +1,4 @@
http://purl.obolibrary.org/obo/RO_0000056
http://purl.obolibrary.org/obo/RO_0002242 has exposure route
http://purl.obolibrary.org/obo/NCIT_C12428 has target end location
+http://purl.obolibrary.org/obo/RO_0016004 has exposure medium
From e4dad15e9287ac99cae13f81c41d302210cb8c33 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
<83466805+jmillanacosta@users.noreply.github.com>
Date: Tue, 16 Apr 2024 11:58:03 +0200
Subject: [PATCH 09/10] Attempt to fix issue with PR runs
---
.github/workflows/build.yml | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 79b09386..807b24af 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -205,7 +205,7 @@ jobs:
run: bash scripts/src/build-workflow/props.sh ro
# Commit and push
- name: Commit OWL files
- if: github.actor != 'github-actions[bot]'
+ if: ${{ github.event_name != 'pull_request' || github.event.action != 'closed' || github.event.pull_request.merged == false }} # do not try to commit if not ran in branch but on PR
run: |
git checkout "${{ github.ref_name }}"
git pull
@@ -218,7 +218,6 @@ jobs:
else
git commit -m "Actions - slim updated" ./external-dev/*.owl || true
fi
-
# Check if there are changes to push
if [[ $(git rev-parse --abbrev-ref HEAD) == "${{ github.ref_name }}" ]]; then
if [ -n "$(git cherry -v)" ]; then
From 2da778a7f6b62371f89abf85246cc3d06b14ad2f Mon Sep 17 00:00:00 2001
From: Slimmer bot
Date: Tue, 16 Apr 2024 10:08:47 +0000
Subject: [PATCH 10/10] Actions - slim updated
---
external-dev/aopo-slim.owl | 2 +-
external-dev/bao-slim-prop.owl | 23 ---
external-dev/bao-slim.owl | 21 ++-
external-dev/bfo-slim.owl | 2 +-
external-dev/bto-slim.owl | 2 +-
external-dev/ccont-slim.owl | 2 +-
external-dev/chebi-slim.owl | 2 +-
external-dev/cheminf-slim.owl | 2 +-
external-dev/chmo-slim.owl | 2 +-
external-dev/clo-slim.owl | 2 +-
external-dev/efo-slim.owl | 279 +++++++++++++++++++++++++++++++--
external-dev/envo-slim.owl | 2 +-
external-dev/fabio-slim.owl | 2 +-
external-dev/go-slim.owl | 2 +-
external-dev/iao-slim.owl | 2 +-
external-dev/msio-slim.owl | 2 +-
external-dev/ncit-slim.owl | 2 +-
external-dev/npo-slim.owl | 2 +-
external-dev/oae-slim.owl | 2 +-
external-dev/obcs-slim.owl | 2 +-
external-dev/obi-slim.owl | 2 +-
external-dev/pato-slim.owl | 2 +-
external-dev/sio-slim.owl | 2 +-
external-dev/uberon-slim.owl | 2 +-
external-dev/uo-slim.owl | 2 +-
25 files changed, 310 insertions(+), 57 deletions(-)
diff --git a/external-dev/aopo-slim.owl b/external-dev/aopo-slim.owl
index 8bdf77b8..ea0cb833 100644
--- a/external-dev/aopo-slim.owl
+++ b/external-dev/aopo-slim.owl
@@ -44,7 +44,7 @@
https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl
Slimmer
- 2024-04-10 15:00:20
+ 2024-04-16 10:00:14
28:03:2024 12:38
chebi_ontology
human_phenotype
diff --git a/external-dev/bao-slim-prop.owl b/external-dev/bao-slim-prop.owl
index 910135ac..ae545f8d 100644
--- a/external-dev/bao-slim-prop.owl
+++ b/external-dev/bao-slim-prop.owl
@@ -179,7 +179,6 @@ We also have the outstanding issue of how to aim different definitions to differ
-
has measure group
@@ -259,28 +258,6 @@ We also have the outstanding issue of how to aim different definitions to differ
It is the interval of time between the addition of a perturbagen, substrate or cell modification and the measurement of change, as observed by a detection method in the bioassay.
has incubation time value
-
-
-
-
-
-
-
-
-
-
-
- Measure group is used to group and link multiple (different) sets of experimental results to one bioassay. Measure groups thus facilitate the description of multiparametric (or multiplexed) assays, that measure more than one effect of the perturbagen on the system that is screened. It also facilitate the definition of panel and profiling assays, e.g. assays that test compounds against multiple (protein) targets.
-Compare definition of bioassay.
-Measure group links to those classes that can vary among different measurements of a panel assay, profiling assay, multiparametric assay, e.g. target, assay design method, physical detection method, endpoint. Measure group is also used to define derived endpoints, for example concentration-response endpoints obtained by curve fitting a set of results from the same compound tested in the same assay at different concentrations.
- measure group
-
diff --git a/external-dev/bao-slim.owl b/external-dev/bao-slim.owl
index 8aa4b84c..96e5b617 100644
--- a/external-dev/bao-slim.owl
+++ b/external-dev/bao-slim.owl
@@ -24,7 +24,7 @@
http://bioassayontology.org/bao/bao_complete_merged.owl
Slimmer
- 2024-04-10 15:00:28
+ 2024-04-16 10:00:23
Contact:
Stephan Schurer
stephan dot schurer at gmail dot com
@@ -1930,6 +1930,25 @@ The dissociation constant has molar units (M), which corresponds to the concentr
+
+
+
+
+
+
+
+
+
+
+
+ Measure group is used to group and link multiple (different) sets of experimental results to one bioassay. Measure groups thus facilitate the description of multiparametric (or multiplexed) assays, that measure more than one effect of the perturbagen on the system that is screened. It also facilitate the definition of panel and profiling assays, e.g. assays that test compounds against multiple (protein) targets.
+Compare definition of bioassay.
+Measure group links to those classes that can vary among different measurements of a panel assay, profiling assay, multiparametric assay, e.g. target, assay design method, physical detection method, endpoint. Measure group is also used to define derived endpoints, for example concentration-response endpoints obtained by curve fitting a set of results from the same compound tested in the same assay at different concentrations.
+ measure group
+
+
+
+
diff --git a/external-dev/bfo-slim.owl b/external-dev/bfo-slim.owl
index 279dcba1..aed988ff 100644
--- a/external-dev/bfo-slim.owl
+++ b/external-dev/bfo-slim.owl
@@ -45,7 +45,7 @@
http://purl.obolibrary.org/obo/bfo/classes-only.owl
Slimmer
- 2024-04-10 15:00:30
+ 2024-04-16 10:00:25
The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO ("bfo_classes_only.owl") includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl ("bfo.owl"). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.
If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies.
diff --git a/external-dev/bto-slim.owl b/external-dev/bto-slim.owl
index ff63b630..239c71b6 100644
--- a/external-dev/bto-slim.owl
+++ b/external-dev/bto-slim.owl
@@ -20,7 +20,7 @@
http://purl.obolibrary.org/obo/bto.owl
OBO-Edit 2.3.1
Slimmer
- 2024-04-10 15:00:36
+ 2024-04-16 10:00:29
23:10:2021 16:56
BrendaTissueOBO
1.2
diff --git a/external-dev/ccont-slim.owl b/external-dev/ccont-slim.owl
index 2d5298e1..3bef9d8c 100644
--- a/external-dev/ccont-slim.owl
+++ b/external-dev/ccont-slim.owl
@@ -15,7 +15,7 @@
https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl
Matthias Ganzinger, matthias.ganzinger@med.uni-heidelberg.de
Slimmer
- 2024-04-10 15:00:38
+ 2024-04-16 10:00:31
cell culture ontology (CCONT)
1.1
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/chebi-slim.owl b/external-dev/chebi-slim.owl
index 95954089..2e5c987b 100644
--- a/external-dev/chebi-slim.owl
+++ b/external-dev/chebi-slim.owl
@@ -17,7 +17,7 @@
http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo
Slimmer
- 2024-04-10 15:03:03
+ 2024-04-16 10:02:20
28:03:2024 12:38
chebi_ontology
1.2
diff --git a/external-dev/cheminf-slim.owl b/external-dev/cheminf-slim.owl
index 0697b2f5..7cb4a1a5 100644
--- a/external-dev/cheminf-slim.owl
+++ b/external-dev/cheminf-slim.owl
@@ -79,7 +79,7 @@
http://creativecommons.org/publicdomain/zero/1.0/
http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl
Slimmer
- 2024-04-10 15:00:42
+ 2024-04-16 10:00:33
An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO
Document containing upporting external terms
IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999
diff --git a/external-dev/chmo-slim.owl b/external-dev/chmo-slim.owl
index 3ea3875d..066a4e51 100644
--- a/external-dev/chmo-slim.owl
+++ b/external-dev/chmo-slim.owl
@@ -19,7 +19,7 @@
http://purl.obolibrary.org/obo/chmo.owl
Slimmer
- 2024-04-10 15:03:09
+ 2024-04-16 10:02:25
1.2
batchelorc
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/clo-slim.owl b/external-dev/clo-slim.owl
index c909b21a..a1b32f72 100644
--- a/external-dev/clo-slim.owl
+++ b/external-dev/clo-slim.owl
@@ -38,7 +38,7 @@
http://purl.obolibrary.org/obo/cl.owl
Slimmer
- 2024-04-10 15:03:22
+ 2024-04-16 10:02:38
See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo.
2024-04-05
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/efo-slim.owl b/external-dev/efo-slim.owl
index cf18f72f..17050e42 100644
--- a/external-dev/efo-slim.owl
+++ b/external-dev/efo-slim.owl
@@ -55,9 +55,9 @@ License.
www.apache.org/licenses/LICENSE-2.0
http://www.ebi.ac.uk/efo/efo.owl
Slimmer
- 2024-04-10 15:05:17
- 2024-03-18
- 3.64.0
+ 2024-04-16 10:04:32
+ 2024-04-15
+ 3.65.0
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
@@ -1121,6 +1121,13 @@ This annotation property may be replaced with an annotation property from an ext
+
+
+
+
+
+
+
@@ -1314,6 +1321,13 @@ This annotation property may be replaced with an annotation property from an ext
+
+
+
+
+
+
+
@@ -7662,6 +7676,197 @@ Established melanoma cell line from the Skin Cancer Unit at the German Cancer Re
+
+
+
+
+
+ A phenotypic abnormality that is present at birth.
+ HP:0003595
+ HP:0003601
+ HP:0003624
+ HP:0003660
+ HP:0003666
+ UMLS:C1836142
+ UMLS:C2752013
+ Onset at birth
+ Symptoms present at birth
+ HP:0003577
+ Congenital onset literally means present at birth. Congenital abnormalities are thus generally acquired during fetal development. Congenital abnormalities are often but not always hereditary in nature. Whether a disease manifestation is diagnosed to be intrauterine or congenital may depend on the time at which diagnostic procedures are performed. Thus, most congenital abnormalities are also intrauterine. This term should be used for phenotypic abnormalities or diseases initially observed at the time of birth. For abnormalities observed prior to (e.g., by fetal ultrasound), use the term Antenatal onset (HP:0030674).
+ Congenital onset
+
+
+
+
+ A phenotypic abnormality that is present at birth.
+
+
+
+
+
+ Symptoms present at birth
+
+
+
+
+
+
+
+
+
+
+
+ Onset of disease manifestations in adulthood, defined here as at the age of 16 years or later.
+ HP:0003585
+ HP:0003598
+ HP:0003627
+ HP:0003662
+ HP:0003669
+ UMLS:C1853562
+ Onset in adulthood
+ Onset in early adulthood
+ Symptoms begin in adulthood
+ HP:0003581
+ Adult onset
+
+
+
+
+ Onset of disease manifestations in adulthood, defined here as at the age of 16 years or later.
+
+
+
+
+
+ Symptoms begin in adulthood
+
+
+
+
+
+
+
+
+
+
+
+ Onset of signs or symptoms of disease between 28 days to one year of life.
+ HP:0003576
+ HP:0003579
+ HP:0003591
+ HP:0003594
+ HP:0003599
+ HP:0003600
+ HP:0003629
+ HP:0003631
+ HP:0003667
+ HP:0003672
+ HP:0010573
+ UMLS:C1848924
+ Infantile onset
+ Onset in first year of life
+ Onset in infancy
+ HP:0003593
+ Onset of signs or symptoms of disease within the first 12 months of life.
+ Infantile onset
+
+
+
+
+ Onset of signs or symptoms of disease between 28 days to one year of life.
+
+
+
+
+
+ Infantile onset
+
+
+
+
+
+ Onset in first year of life
+
+
+
+
+
+ Onset in infancy
+
+
+
+
+
+
+
+
+
+
+ Onset of signs or symptoms of disease between the age of 5 and 15 years.
+ HP:0003578
+ HP:0003580
+ HP:0003582
+ HP:0003583
+ HP:0003589
+ HP:0003592
+ HP:0003604
+ HP:0003619
+ HP:0003620
+ HP:0003625
+ HP:0003659
+ HP:0003661
+ HP:0003670
+ UMLS:C4025588
+ Signs and symptoms begin before 15 years of age
+ HP:0003621
+ Juvenile onset
+
+
+
+
+ Onset of signs or symptoms of disease between the age of 5 and 15 years.
+
+
+
+
+
+ Signs and symptoms begin before 15 years of age
+
+
+
+
+
+
+
+
+
+
+
+
+ Onset of signs or symptoms of disease within the first 28 days of life.
+ HP:0003622
+ UMLS:C1855106
+ Neonatal onset
+ Onset in first weeks of life
+ Onset in neonatal period
+ HP:0003623
+ Neonatal onset
+
+
+
+
+ Onset of signs or symptoms of disease within the first 28 days of life.
+
+
+
+
+
+ Neonatal onset
+
+
+
+
+
@@ -7838,6 +8043,38 @@ Established melanoma cell line from the Skin Cancer Unit at the German Cancer Re
+
+
+
+
+
+ Onset of disease at the age of between 1 and 5 years.
+
+ 2012-03-25T07:16:20Z
+ HP:0003586
+ HP:0003617
+ UMLS:C1837352
+ Symptoms begin in childhood
+ HP:0011463
+ This term refers to ages up to but not including the fifth birthday (see Juvenile onset).
+ Childhood onset
+
+
+
+
+ Onset of disease at the age of between 1 and 5 years.
+
+
+
+
+
+ Symptoms begin in childhood
+
+
+
+
+
+
@@ -7887,6 +8124,33 @@ Established melanoma cell line from the Skin Cancer Unit at the German Cancer Re
+
+
+
+
+
+ Onset of disease manifestations before adulthood, defined here as before the age of 16 years, but excluding neonatal or congenital onset.
+ 2018-11-01T15:27:45Z
+
+ Onset before adulthood
+ Paediatric onset
+ Pediatric onset
+
+
+
+
+ Onset of disease manifestations before adulthood, defined here as before the age of 16 years, but excluding neonatal or congenital onset.
+
+
+
+
+
+ Paediatric onset
+
+
+
+
+
@@ -34264,7 +34528,7 @@ her lifetime
-
+
human ovarian mesonephroid adenocarcinoma cell line from a 34 year old Japanese female
Laura Huerta
@@ -151870,13 +152134,6 @@ of diseased coronary vessels at the time of a catheterization procedure. The var
serially_homologous_to
serially_homologous_to
-
- RO:0002162
- uberon
- in_taxon
- in_taxon
- in taxon
-
RO:0002203
uberon
diff --git a/external-dev/envo-slim.owl b/external-dev/envo-slim.owl
index f3a61282..76a5398b 100644
--- a/external-dev/envo-slim.owl
+++ b/external-dev/envo-slim.owl
@@ -35,7 +35,7 @@
https://github.com/EnvironmentOntology/envo/
https://github.com/EnvironmentOntology/envo/issues/
Slimmer
- 2024-04-10 15:05:24
+ 2024-04-16 10:04:38
ENVO
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl>) VersionIRI(<null>))) [Axioms: 679 Logical Axioms: 119]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl>) VersionIRI(<null>))) [Axioms: 206 Logical Axioms: 34]
diff --git a/external-dev/fabio-slim.owl b/external-dev/fabio-slim.owl
index b3ad36cc..7ee7968f 100644
--- a/external-dev/fabio-slim.owl
+++ b/external-dev/fabio-slim.owl
@@ -33,7 +33,7 @@ FaBiO classes are structured according to the FRBR schema of Works, Expressions,
fabio
http://purl.org/spar/fabio/
Slimmer
- 2024-04-10 15:05:28
+ 2024-04-16 10:04:42
FaBiO, the FRBR-aligned Bibliographic Ontology, is an ontology for recording and publishing on the Semantic Web bibliographic records of scholarly endeavours. It forms part of SPAR, a suite of Semantic Publishing and Referencing Ontologies. Other SPAR ontologies are described at http://purl.org/spar/.
This ontology is available at http://purl.org/spar/fabio, and uses the namespace prefix fabio.
diff --git a/external-dev/go-slim.owl b/external-dev/go-slim.owl
index 379fd40f..f6ac7093 100644
--- a/external-dev/go-slim.owl
+++ b/external-dev/go-slim.owl
@@ -24,7 +24,7 @@
http://purl.obolibrary.org/obo/go.owl
Slimmer
- 2024-04-10 15:05:50
+ 2024-04-16 10:05:04
gene_ontology
1.2
2024-03-28
diff --git a/external-dev/iao-slim.owl b/external-dev/iao-slim.owl
index 2bd3a46d..8c29ab37 100644
--- a/external-dev/iao-slim.owl
+++ b/external-dev/iao-slim.owl
@@ -57,7 +57,7 @@
http://purl.obolibrary.org/obo/iao.owl
Slimmer
- 2024-04-10 15:05:53
+ 2024-04-16 10:05:06
An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO
IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999
IDs allocated to subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl: IAO_0021000-IAO_0021999
diff --git a/external-dev/msio-slim.owl b/external-dev/msio-slim.owl
index 9188027d..c1ff80d0 100644
--- a/external-dev/msio-slim.owl
+++ b/external-dev/msio-slim.owl
@@ -181,7 +181,7 @@ http://www.cosmos-fp7.eu/WP2
Slimmer
Daniel Schober
2017-10-19T10:11:26Z
- 2024-04-10 15:09:00
+ 2024-04-16 10:08:02
Please see the project site https://github.com/BFO-ontology/BFO, the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel, the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx. This ontology is generated from a specification at https://github.com/BFO-ontology/BFO/tree/master/src/ontology/owl-group/specification/ and with the code that generates the OWL version in https://github.com/BFO-ontology/BFO/tree/master/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif.
The BSD license on the BFO project site refers to code used to build BFO.
This version (1.1.0) uses the Basic Formal Ontology (BFO) as its top level ontology. We might at some point close the resulting semantic gap by using OBI and IAO as intermediate bridges.
diff --git a/external-dev/ncit-slim.owl b/external-dev/ncit-slim.owl
index 56a2a700..a5234817 100644
--- a/external-dev/ncit-slim.owl
+++ b/external-dev/ncit-slim.owl
@@ -21,7 +21,7 @@
NCI Thesaurus OBO Edition
http://purl.obolibrary.org/obo/ncit.owl
Slimmer
- 2024-04-10 15:08:04
+ 2024-04-16 10:07:11
NCI Thesaurus, a controlled vocabulary in support of NCI administrative and scientific activities. Produced by the Enterprise Vocabulary System (EVS), a project by the NCI Center for Biomedical Informatics and Information Technology. National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, U.S.A.
23.09d
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/npo-slim.owl b/external-dev/npo-slim.owl
index 21932f5f..968762b9 100644
--- a/external-dev/npo-slim.owl
+++ b/external-dev/npo-slim.owl
@@ -17,7 +17,7 @@
http://purl.bioontology.org/ontology/npo
https://raw.githubusercontent.com/enanomapper/npo/master/npo-inferred.owl
Slimmer
- 2024-04-10 15:08:09
+ 2024-04-16 10:07:15
Inferred version created with Pellet reasoner in Protege editor (v. 4.1)
The NPO was primarily developed by Dennis G. Thomas in collaboration with Nathan A. Baker and Rohit V. Pappu. This development was supported by the NIH through grants U54 CA119342 and U54 HG004028.
2013-05-31 (yyyy-mm-dd)
diff --git a/external-dev/oae-slim.owl b/external-dev/oae-slim.owl
index 9c0bccfa..4f4947c0 100644
--- a/external-dev/oae-slim.owl
+++ b/external-dev/oae-slim.owl
@@ -58,7 +58,7 @@
OAE: Ontology of Adverse Events
http://purl.obolibrary.org/obo/oae.owl
Slimmer
- 2024-04-10 15:08:15
+ 2024-04-16 10:07:21
1.2.47
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/obcs-slim.owl b/external-dev/obcs-slim.owl
index 39f1af0c..988ac706 100644
--- a/external-dev/obcs-slim.owl
+++ b/external-dev/obcs-slim.owl
@@ -37,7 +37,7 @@
http://purl.obolibrary.org/obo/obcs.owl
Slimmer
- 2024-04-10 15:08:19
+ 2024-04-16 10:07:25
2023-12-08
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/obi-slim.owl b/external-dev/obi-slim.owl
index b1633cba..bebe37a6 100644
--- a/external-dev/obi-slim.owl
+++ b/external-dev/obi-slim.owl
@@ -82,7 +82,7 @@
Ontology for Biomedical Investigations
http://purl.obolibrary.org/obo/obi.owl
Slimmer
- 2024-04-10 15:08:25
+ 2024-04-16 10:07:30
Please cite the OBI consortium http://purl.obolibrary.org/obo/obi where traditional citation is called for. However it is adequate that individual terms be attributed simply by use of the identifying PURL for the term, in projects that refer to them.
2024-01-09
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/pato-slim.owl b/external-dev/pato-slim.owl
index 0004339c..9ce28868 100644
--- a/external-dev/pato-slim.owl
+++ b/external-dev/pato-slim.owl
@@ -39,7 +39,7 @@
http://purl.obolibrary.org/obo/pato.owl
Slimmer
- 2024-04-10 15:08:33
+ 2024-04-16 10:07:37
quality
1.2
2024-03-28
diff --git a/external-dev/sio-slim.owl b/external-dev/sio-slim.owl
index 7b6593ff..63a2b18f 100644
--- a/external-dev/sio-slim.owl
+++ b/external-dev/sio-slim.owl
@@ -80,7 +80,7 @@ mailing list: http://groups.google.com/group/sio-ontology
role chains:
'has capability' o 'is realized in' -> 'is participant in'
Slimmer
- 2024-04-10 15:08:36
+ 2024-04-16 10:07:40
http://sio.semanticscience.org
1.59
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.
diff --git a/external-dev/uberon-slim.owl b/external-dev/uberon-slim.owl
index bc2d8bf5..c6966cc9 100644
--- a/external-dev/uberon-slim.owl
+++ b/external-dev/uberon-slim.owl
@@ -159,7 +159,7 @@
https://github.com/obophenotype/uberon/issues/
https://lists.sourceforge.net/lists/listinfo/obo-anatomy
Slimmer
- 2024-04-10 15:08:55
+ 2024-04-16 10:07:57
uberon
1.2
AEO
diff --git a/external-dev/uo-slim.owl b/external-dev/uo-slim.owl
index 6cdb2c8d..8b651760 100644
--- a/external-dev/uo-slim.owl
+++ b/external-dev/uo-slim.owl
@@ -12,7 +12,7 @@
http://purl.obolibrary.org/obo/uo.owl
Slimmer
- 2024-04-10 15:08:57
+ 2024-04-16 10:07:59
2023-05-25
This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.