From 789b5ea5c02df0cdc61fcde6d6a88ec1a450f0ec Mon Sep 17 00:00:00 2001 From: Slimmer bot Date: Sun, 21 Apr 2024 18:59:42 +0000 Subject: [PATCH] Actions - slim updated --- external-dev/aopo-slim.owl | 2 +- external-dev/bao-slim.owl | 2 +- external-dev/bfo-slim.owl | 2 +- external-dev/bto-slim.owl | 2 +- external-dev/ccont-slim.owl | 2 +- external-dev/chebi-slim.owl | 2 +- external-dev/cheminf-slim.owl | 2 +- external-dev/chmo-slim.owl | 2 +- external-dev/clo-slim.owl | 52 ++++++++++++++++++++++++++++++----- external-dev/efo-slim.owl | 2 +- external-dev/envo-slim.owl | 2 +- external-dev/fabio-slim.owl | 2 +- external-dev/go-slim.owl | 4 +-- external-dev/iao-slim.owl | 2 +- external-dev/msio-slim.owl | 2 +- external-dev/ncit-slim.owl | 2 +- external-dev/npo-slim.owl | 2 +- external-dev/oae-slim.owl | 2 +- external-dev/obcs-slim.owl | 2 +- external-dev/obi-slim.owl | 2 +- external-dev/pato-slim.owl | 2 +- external-dev/sio-slim.owl | 2 +- external-dev/uberon-slim.owl | 2 +- external-dev/uo-slim.owl | 2 +- 24 files changed, 69 insertions(+), 31 deletions(-) diff --git a/external-dev/aopo-slim.owl b/external-dev/aopo-slim.owl index 514f5210..6ef1cc8a 100644 --- a/external-dev/aopo-slim.owl +++ b/external-dev/aopo-slim.owl @@ -44,7 +44,7 @@ https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl Slimmer - 2024-04-19 13:39:32 + 2024-04-21 18:52:15 28:03:2024 12:38 chebi_ontology human_phenotype diff --git a/external-dev/bao-slim.owl b/external-dev/bao-slim.owl index 95c7ea66..549e6dac 100644 --- a/external-dev/bao-slim.owl +++ b/external-dev/bao-slim.owl @@ -24,7 +24,7 @@ http://bioassayontology.org/bao/bao_complete_merged.owl Slimmer - 2024-04-19 13:39:41 + 2024-04-21 18:52:23 Contact: Stephan Schurer stephan dot schurer at gmail dot com diff --git a/external-dev/bfo-slim.owl b/external-dev/bfo-slim.owl index 500374e3..cf87bc00 100644 --- a/external-dev/bfo-slim.owl +++ b/external-dev/bfo-slim.owl @@ -45,7 +45,7 @@ http://purl.obolibrary.org/obo/bfo/classes-only.owl Slimmer - 2024-04-19 13:39:42 + 2024-04-21 18:52:25 The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO ("bfo_classes_only.owl") includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl ("bfo.owl"). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl. If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies. diff --git a/external-dev/bto-slim.owl b/external-dev/bto-slim.owl index 170b5ee8..5a84073e 100644 --- a/external-dev/bto-slim.owl +++ b/external-dev/bto-slim.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/bto.owl OBO-Edit 2.3.1 Slimmer - 2024-04-19 13:39:47 + 2024-04-21 18:52:30 23:10:2021 16:56 BrendaTissueOBO 1.2 diff --git a/external-dev/ccont-slim.owl b/external-dev/ccont-slim.owl index 6f6dd26f..c354cc49 100644 --- a/external-dev/ccont-slim.owl +++ b/external-dev/ccont-slim.owl @@ -15,7 +15,7 @@ https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl Matthias Ganzinger, matthias.ganzinger@med.uni-heidelberg.de Slimmer - 2024-04-19 13:39:48 + 2024-04-21 18:52:31 cell culture ontology (CCONT) 1.1 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/chebi-slim.owl b/external-dev/chebi-slim.owl index 70e066a9..efc2b719 100644 --- a/external-dev/chebi-slim.owl +++ b/external-dev/chebi-slim.owl @@ -17,7 +17,7 @@ http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo Slimmer - 2024-04-19 13:41:23 + 2024-04-21 18:54:08 28:03:2024 12:38 chebi_ontology 1.2 diff --git a/external-dev/cheminf-slim.owl b/external-dev/cheminf-slim.owl index f2c7d643..8e6fc1e0 100644 --- a/external-dev/cheminf-slim.owl +++ b/external-dev/cheminf-slim.owl @@ -80,7 +80,7 @@ http://creativecommons.org/publicdomain/zero/1.0/ http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl Slimmer - 2024-04-19 13:39:51 + 2024-04-21 18:52:34 An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO Document containing upporting external terms IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999 diff --git a/external-dev/chmo-slim.owl b/external-dev/chmo-slim.owl index 967820c7..d8fbea5f 100644 --- a/external-dev/chmo-slim.owl +++ b/external-dev/chmo-slim.owl @@ -19,7 +19,7 @@ http://purl.obolibrary.org/obo/chmo.owl Slimmer - 2024-04-19 13:41:29 + 2024-04-21 18:54:12 1.2 batchelorc This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/clo-slim.owl b/external-dev/clo-slim.owl index c120bba2..e2de9f21 100644 --- a/external-dev/clo-slim.owl +++ b/external-dev/clo-slim.owl @@ -38,7 +38,7 @@ http://purl.obolibrary.org/obo/cl.owl Slimmer - 2024-04-19 13:41:40 + 2024-04-21 18:54:24 See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo. 2024-04-05 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. @@ -1518,6 +1518,44 @@ WHERE { + + + + + + + A non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation. + + BTO:0000132 + CALOHA:TS-0803 + FMA:62851 + anucleate thrombocyte + blood platelet + enucleate thrombocyte + + + + Platelets are reportedly CCR1-positive, CCR2-negative, CCR3-positive, CCR4-positive, CCR5-negative, CCR6-negative, CCR7-negative, CCR8-negative, CCR9-negative, CCR10-negative, CD16-positive, CD23-positive, CD32-positive, CD40-positive, CD41-positive CD42-positive, CD61-positive, CD62P-positive, CD64-positive, CD89-positive, CD102-positive, CD147-positive (activated platelets), CD154-positive (activated platelets), CD162-positive, CD209, CD282-positive, CD284-positive, CD289-positive, CD181-negative, CD182-negative, CD183-negative, CD184-positive, CLEC2-positive, GPVI-positive, JAMC-positive, PAR1-positive, PAR2-negative, PAR3-positive, PAR4-positive, TSP1-positive, and TXA2R-positive. Platelets can reportedly produce CCL2, CCL3, CCL5, CCL7, CCL17, CD40L, CXCL1, CXCL4, CXCL4L1, CXCL5, CXCL7, CXCL8, CXCL12, EGF, factor V, factor VII, factor XI, factor XIII, bFGF, histamine, IGF-1, IL-1beta, PAI-1, PDGF, plasminogen, protein S, serotonin, TGF-beta, TFPI, VEGF, and vWF. + platelet + + + + + A non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation. + GOC:add + GOC:dsd + GOC:tfm + MESH:D001792 + PMID:11110672 + PMID:16987572 + PMID:17204662 + PMID:17479180 + PMID:20414831 + http://en.wikipedia.org/wiki/Platelet + + + + @@ -1607,6 +1645,12 @@ WHERE { lung macrophage + + + + lung macrophages + CALOHA:TS-0576 + @@ -1614,12 +1658,6 @@ WHERE { HPA:HPA NPX:PDR - - - - lung macrophages - CALOHA:TS-0576 - diff --git a/external-dev/efo-slim.owl b/external-dev/efo-slim.owl index 2791d638..ef0afc0e 100644 --- a/external-dev/efo-slim.owl +++ b/external-dev/efo-slim.owl @@ -55,7 +55,7 @@ License. www.apache.org/licenses/LICENSE-2.0 http://www.ebi.ac.uk/efo/efo.owl Slimmer - 2024-04-19 13:42:37 + 2024-04-21 18:55:29 2024-04-15 3.65.0 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/envo-slim.owl b/external-dev/envo-slim.owl index b2eb3393..617255a2 100644 --- a/external-dev/envo-slim.owl +++ b/external-dev/envo-slim.owl @@ -35,7 +35,7 @@ https://github.com/EnvironmentOntology/envo/ https://github.com/EnvironmentOntology/envo/issues/ Slimmer - 2024-04-19 13:42:44 + 2024-04-21 18:55:35 ENVO Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl>) VersionIRI(<null>))) [Axioms: 679 Logical Axioms: 119] Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl>) VersionIRI(<null>))) [Axioms: 206 Logical Axioms: 34] diff --git a/external-dev/fabio-slim.owl b/external-dev/fabio-slim.owl index ccdd133a..676122a9 100644 --- a/external-dev/fabio-slim.owl +++ b/external-dev/fabio-slim.owl @@ -33,7 +33,7 @@ FaBiO classes are structured according to the FRBR schema of Works, Expressions, fabio http://purl.org/spar/fabio/ Slimmer - 2024-04-19 13:42:48 + 2024-04-21 18:55:40 FaBiO, the FRBR-aligned Bibliographic Ontology, is an ontology for recording and publishing on the Semantic Web bibliographic records of scholarly endeavours. It forms part of SPAR, a suite of Semantic Publishing and Referencing Ontologies. Other SPAR ontologies are described at http://purl.org/spar/. This ontology is available at http://purl.org/spar/fabio, and uses the namespace prefix fabio. diff --git a/external-dev/go-slim.owl b/external-dev/go-slim.owl index 29f8f936..5b08a6cf 100644 --- a/external-dev/go-slim.owl +++ b/external-dev/go-slim.owl @@ -24,10 +24,10 @@ http://purl.obolibrary.org/obo/go.owl Slimmer - 2024-04-19 13:43:10 + 2024-04-21 18:56:02 gene_ontology 1.2 - 2024-03-28 + 2024-04-18 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/iao-slim.owl b/external-dev/iao-slim.owl index 093d5b10..ecf22d2f 100644 --- a/external-dev/iao-slim.owl +++ b/external-dev/iao-slim.owl @@ -57,7 +57,7 @@ http://purl.obolibrary.org/obo/iao.owl Slimmer - 2024-04-19 13:43:12 + 2024-04-21 18:56:04 An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999 IDs allocated to subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl: IAO_0021000-IAO_0021999 diff --git a/external-dev/msio-slim.owl b/external-dev/msio-slim.owl index 153735d0..c39e85f7 100644 --- a/external-dev/msio-slim.owl +++ b/external-dev/msio-slim.owl @@ -181,7 +181,7 @@ http://www.cosmos-fp7.eu/WP2 Slimmer Daniel Schober 2017-10-19T10:11:26Z - 2024-04-19 13:46:06 + 2024-04-21 18:58:54 Please see the project site https://github.com/BFO-ontology/BFO, the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel, the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx. This ontology is generated from a specification at https://github.com/BFO-ontology/BFO/tree/master/src/ontology/owl-group/specification/ and with the code that generates the OWL version in https://github.com/BFO-ontology/BFO/tree/master/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif. The BSD license on the BFO project site refers to code used to build BFO. This version (1.1.0) uses the Basic Formal Ontology (BFO) as its top level ontology. We might at some point close the resulting semantic gap by using OBI and IAO as intermediate bridges. diff --git a/external-dev/ncit-slim.owl b/external-dev/ncit-slim.owl index 4d4bd6b8..e9bf6aaa 100644 --- a/external-dev/ncit-slim.owl +++ b/external-dev/ncit-slim.owl @@ -21,7 +21,7 @@ NCI Thesaurus OBO Edition http://purl.obolibrary.org/obo/ncit.owl Slimmer - 2024-04-19 13:45:16 + 2024-04-21 18:58:04 NCI Thesaurus, a controlled vocabulary in support of NCI administrative and scientific activities. Produced by the Enterprise Vocabulary System (EVS), a project by the NCI Center for Biomedical Informatics and Information Technology. National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, U.S.A. 23.09d This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/npo-slim.owl b/external-dev/npo-slim.owl index 66ff3a7f..13551a6a 100644 --- a/external-dev/npo-slim.owl +++ b/external-dev/npo-slim.owl @@ -17,7 +17,7 @@ http://purl.bioontology.org/ontology/npo https://raw.githubusercontent.com/enanomapper/npo/master/npo-inferred.owl Slimmer - 2024-04-19 13:45:20 + 2024-04-21 18:58:08 Inferred version created with Pellet reasoner in Protege editor (v. 4.1) The NPO was primarily developed by Dennis G. Thomas in collaboration with Nathan A. Baker and Rohit V. Pappu. This development was supported by the NIH through grants U54 CA119342 and U54 HG004028. 2013-05-31 (yyyy-mm-dd) diff --git a/external-dev/oae-slim.owl b/external-dev/oae-slim.owl index 9f40122a..d966c075 100644 --- a/external-dev/oae-slim.owl +++ b/external-dev/oae-slim.owl @@ -58,7 +58,7 @@ OAE: Ontology of Adverse Events http://purl.obolibrary.org/obo/oae.owl Slimmer - 2024-04-19 13:45:26 + 2024-04-21 18:58:15 1.2.47 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/obcs-slim.owl b/external-dev/obcs-slim.owl index 5d1853af..d3602059 100644 --- a/external-dev/obcs-slim.owl +++ b/external-dev/obcs-slim.owl @@ -37,7 +37,7 @@ http://purl.obolibrary.org/obo/obcs.owl Slimmer - 2024-04-19 13:45:30 + 2024-04-21 18:58:19 2023-12-08 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/obi-slim.owl b/external-dev/obi-slim.owl index 6fd1889f..f52e7c3a 100644 --- a/external-dev/obi-slim.owl +++ b/external-dev/obi-slim.owl @@ -82,7 +82,7 @@ Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/obi.owl Slimmer - 2024-04-19 13:45:35 + 2024-04-21 18:58:23 Please cite the OBI consortium http://purl.obolibrary.org/obo/obi where traditional citation is called for. However it is adequate that individual terms be attributed simply by use of the identifying PURL for the term, in projects that refer to them. 2024-01-09 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/pato-slim.owl b/external-dev/pato-slim.owl index 181b2889..ccec3b30 100644 --- a/external-dev/pato-slim.owl +++ b/external-dev/pato-slim.owl @@ -39,7 +39,7 @@ http://purl.obolibrary.org/obo/pato.owl Slimmer - 2024-04-19 13:45:42 + 2024-04-21 18:58:31 quality 1.2 2024-03-28 diff --git a/external-dev/sio-slim.owl b/external-dev/sio-slim.owl index 328917fb..ddf2f344 100644 --- a/external-dev/sio-slim.owl +++ b/external-dev/sio-slim.owl @@ -80,7 +80,7 @@ mailing list: http://groups.google.com/group/sio-ontology role chains: 'has capability' o 'is realized in' -> 'is participant in' Slimmer - 2024-04-19 13:45:44 + 2024-04-21 18:58:33 http://sio.semanticscience.org 1.59 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer. diff --git a/external-dev/uberon-slim.owl b/external-dev/uberon-slim.owl index 092250e5..3d0e46c6 100644 --- a/external-dev/uberon-slim.owl +++ b/external-dev/uberon-slim.owl @@ -159,7 +159,7 @@ https://github.com/obophenotype/uberon/issues/ https://lists.sourceforge.net/lists/listinfo/obo-anatomy Slimmer - 2024-04-19 13:46:02 + 2024-04-21 18:58:50 uberon 1.2 AEO diff --git a/external-dev/uo-slim.owl b/external-dev/uo-slim.owl index 50e4f3e3..60be1508 100644 --- a/external-dev/uo-slim.owl +++ b/external-dev/uo-slim.owl @@ -12,7 +12,7 @@ http://purl.obolibrary.org/obo/uo.owl Slimmer - 2024-04-19 13:46:03 + 2024-04-21 18:58:52 2023-05-25 This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.