diff --git a/config/cheminf.iris b/config/cheminf.iris index a3700277..6b4e0ff8 100644 --- a/config/cheminf.iris +++ b/config/cheminf.iris @@ -1,4 +1,4 @@ -+(http://purl.obolibrary.org/obo/BFO_0000019):http://semanticscience.org/resource/CHEMINF_000247 surface area ++(http://www.bioassayontology.org/bao#BAO_0002128):http://semanticscience.org/resource/CHEMINF_000247 surface area as a physical property endpoint +D(http://purl.obolibrary.org/obo/BFO_0000019):http://semanticscience.org/resource/CHEMINF_000101 chemical substance quality +D(http://purl.obolibrary.org/obo/BFO_0000019):http://semanticscience.org/resource/CHEMINF_000031 molecular entity quality +D(http://purl.obolibrary.org/obo/IAO_0000030):http://semanticscience.org/resource/CHEMINF_000014 chemical entity information format description diff --git a/internal-dev/bao-ext.owl b/internal-dev/bao-ext.owl index a6b90616..1d45436b 100644 --- a/internal-dev/bao-ext.owl +++ b/internal-dev/bao-ext.owl @@ -154,6 +154,121 @@ Impedance-based cell assay + + + + Rhodamine fluorescence microscopy assay + + + + + + + + + + + + H2DCFDA fluorescence assay + + + + + + + + + + + + Rhodamine 123 fluorescence microscopy assay + + + + + + + + + + + + DHE flow cytometry assay + Dihydroethidium flow cytometry assay + + + + + + + + + + + + DHR123 flow cytometry assay + Dihydrorhodamine 123 flow cytometry assay + + + + + + + + + + + + Cellular glutathione quantification assay + Cellular GSH quantification assay + + + + + + + + + + + + Monochlorobimane cellular GSH quantification assay + MCB cellular GSH quantification assay + + + + + + + + + + + + + TMRM flow cytometry assay + Tetramethylrhodamine methyl ester flow cytometry assay + + + + + + + + + + + + DCF flow cytometry assay + Dichlorodihydrofluorescein flow cytometry assay + + + + + + + + diff --git a/internal-dev/cheminf-ext.owl b/internal-dev/cheminf-ext.owl index f8e51dae..3f1948c3 100644 --- a/internal-dev/cheminf-ext.owl +++ b/internal-dev/cheminf-ext.owl @@ -106,6 +106,14 @@ Oxygen vacancies + + + + + + BET surface area endpoint + + diff --git a/internal-dev/chmo-ext.owl b/internal-dev/chmo-ext.owl index 1e29c99f..76c38a06 100644 --- a/internal-dev/chmo-ext.owl +++ b/internal-dev/chmo-ext.owl @@ -8,9 +8,9 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:obo="http://purl.obolibrary.org/obo/" xmlns:dc="http://purl.org/dc/elements/1.1/"> - Laurent Winckers + Javier Millan Acosta CC-BY 4.0 https://creativecommons.org/licenses/by/4.0/ This ontology contains proposed extensions to the Chemical Methods Ontology, which in due course will be submitted to the CHMO. @@ -39,7 +39,5 @@ CHN analysis - - diff --git a/internal-dev/endpoints.owl b/internal-dev/endpoints.owl index a518fbb6..027b2172 100644 --- a/internal-dev/endpoints.owl +++ b/internal-dev/endpoints.owl @@ -446,7 +446,13 @@ Oxidative stress + + + + Cellular glutathione content + Cellular GSH content + @@ -686,7 +692,11 @@ cytotoxicity endpoint - + + + + Mitochondrial membrane potential endpoint + diff --git a/internal-dev/npo-ext.owl b/internal-dev/npo-ext.owl index 16a136e6..eea5819f 100644 --- a/internal-dev/npo-ext.owl +++ b/internal-dev/npo-ext.owl @@ -3235,4 +3235,28 @@ TiO2@SiO2 nanocomposite + + + + Surface area assay + + + + + + + + + + + + BET surface area assay + + + + + + + +