diff --git a/rst/download/bingo.rst b/rst/download/bingo.rst index 42e38d3..0002307 100644 --- a/rst/download/bingo.rst +++ b/rst/download/bingo.rst @@ -15,7 +15,7 @@ Latest release .. toctree:: :maxdepth: 1 - bingo/bingo-1.19.0.rst + bingo/bingo-1.23.0.rst Older releases @@ -24,6 +24,10 @@ Older releases .. toctree:: :maxdepth: 1 + bingo/bingo-1.22.0.rst + bingo/bingo-1.21.0.rst + bingo/bingo-1.20.0.rst + bingo/bingo-1.19.0.rst bingo/bingo-1.18.0.rst bingo/bingo-1.16.0.rst bingo/bingo-1.14.0.rst diff --git a/rst/download/bingo/bingo-1.20.0.rst b/rst/download/bingo/bingo-1.20.0.rst new file mode 100644 index 0000000..1657531 --- /dev/null +++ b/rst/download/bingo/bingo-1.20.0.rst @@ -0,0 +1,45 @@ +Bingo 1.20.0 +------------ + +The changelog is available `on this page <../../indigo/release-notes/indigo-1.20.0.html>`__ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + :widths: 28 24 24 24 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - Oracle + - `64-bit `__ + - `64-bit `__ + - binaries upon request. + * - PostgreSQL 15 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 14 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 13 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 12 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - Microsoft SQL Server + - \- + - `64-bit `__ + - \- + +`Source code on GitHub `__ + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png diff --git a/rst/download/bingo/bingo-1.21.0.rst b/rst/download/bingo/bingo-1.21.0.rst new file mode 100644 index 0000000..294506b --- /dev/null +++ b/rst/download/bingo/bingo-1.21.0.rst @@ -0,0 +1,45 @@ +Bingo 1.21.0 +------------ + +The changelog is available `on this page <../../indigo/release-notes/indigo-1.21.0.html>`__ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + :widths: 28 24 24 24 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - Oracle + - `64-bit `__ + - `64-bit `__ + - binaries upon request. + * - PostgreSQL 15 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 14 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 13 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 12 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - Microsoft SQL Server + - \- + - `64-bit `__ + - \- + +`Source code on GitHub `__ + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png diff --git a/rst/download/bingo/bingo-1.22.0.rst b/rst/download/bingo/bingo-1.22.0.rst new file mode 100644 index 0000000..5cb1c4a --- /dev/null +++ b/rst/download/bingo/bingo-1.22.0.rst @@ -0,0 +1,45 @@ +Bingo 1.22.0 +------------ + +The changelog is available `on this page <../../indigo/release-notes/indigo-1.22.0.html>`__ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + :widths: 28 24 24 24 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - Oracle + - `64-bit `__ + - `64-bit `__ + - binaries upon request. + * - PostgreSQL 15 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 14 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 13 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 12 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - Microsoft SQL Server + - \- + - `64-bit `__ + - \- + +`Source code on GitHub `__ + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png diff --git a/rst/download/bingo/bingo-1.23.0.rst b/rst/download/bingo/bingo-1.23.0.rst new file mode 100644 index 0000000..24cd999 --- /dev/null +++ b/rst/download/bingo/bingo-1.23.0.rst @@ -0,0 +1,45 @@ +Bingo 1.23.0 +------------ + +The changelog is available `on this page <../../indigo/release-notes/indigo-1.23.0.html>`__ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + :widths: 28 24 24 24 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - Oracle + - `64-bit `__ + - `64-bit `__ + - binaries upon request. + * - PostgreSQL 15 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 14 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 13 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 12 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - Microsoft SQL Server + - \- + - `64-bit `__ + - \- + +`Source code on GitHub `__ + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png diff --git a/rst/download/indigo.rst b/rst/download/indigo.rst index 66b0eb4..a3fe38c 100644 --- a/rst/download/indigo.rst +++ b/rst/download/indigo.rst @@ -15,8 +15,7 @@ Latest release .. toctree:: :maxdepth: 1 - indigo/indigo-1.20.0.rst - + indigo/indigo-1.23.0.rst Older releases -------------- @@ -24,6 +23,9 @@ Older releases .. toctree:: :maxdepth: 1 + indigo/indigo-1.22.0.rst + indigo/indigo-1.21.0.rst + indigo/indigo-1.20.0.rst indigo/indigo-1.19.0.rst indigo/indigo-1.18.0.rst indigo/indigo-1.16.0.rst diff --git a/rst/download/indigo/indigo-1.21.0.rst b/rst/download/indigo/indigo-1.21.0.rst new file mode 100644 index 0000000..7bbd366 --- /dev/null +++ b/rst/download/indigo/indigo-1.21.0.rst @@ -0,0 +1,98 @@ + +.. toctree:: + :hidden: + :includehidden: + + ../../indigo/release-notes/index.rst + + +Indigo 1.21.0 +------------- + +Language Bindings +~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 0 + :stub-columns: 1 + + * - |p-icon| Python + - `indigo-python.zip `__ + * - |j-icon| Java + - `indigo-java.zip `__ + * - |c-icon| .NET + - `indigo-dotnet.zip `__ + * - |n-icon| Native Libraries in one archive + - `indigo-native-shared-libs.zip `__ + + +Platform/CPU Bindings +~~~~~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - |n-icon| Native Libraries x64 + - `indigo-libs-linux-x86_64.zip `__ + - `indigo-libs-windows-x86_64.zip `__ + - `indigo-libs-macos-x86_64.zip `__ + * - + - + - `indigo-libs-windows-mingw-x86_64.zip `__ + - + * - |n-icon| Native Libraries ARM64 + - `indigo-libs-linux-aarch64.zip `__ + - \- + - `indigo-libs-macos-aarch64.zip `__ + * - |n-icon| Native Libraries i386 + - \- + - `indigo-libs-windows-i386.zip `__ + - \- + * - |n-icon| Utilities x64 + - `indigo-utils-linux-x86_64.zip `__ + - `indigo-utils-windows-x86_64.zip `__ + - `indigo-utils-macos-x86_64.zip `__ + +Source code +~~~~~~~~~~~ + +`Source code zip `__ + +`Repository on GitHub `__ + + +NuGet Repository +~~~~~~~~~~~~~~~~ + +Indigo .NET packages available at `Nuget `__ + +Just add ``Indigo.Net`` as a dependency into the project. + +PyPi package +~~~~~~~~~~~~ + +Indigo Python SDK can be found at `PyPi `__ + +One can install the Indigo library using *pip* utility + + +.. code-block:: xml + + pip install epam.indigo + + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png +.. |image3| image:: ../../assets/globe.png +.. |p-icon| image:: ../../assets/indigo/python-icon.png +.. |j-icon| image:: ../../assets/indigo/java-icon.png +.. |c-icon| image:: ../../assets/indigo/csharp-icon.png +.. |n-icon| image:: ../../assets/indigo/native-icon.png +.. |w-icon| image:: ../../assets/indigo/wasm-icon.png diff --git a/rst/download/indigo/indigo-1.22.0.rst b/rst/download/indigo/indigo-1.22.0.rst new file mode 100644 index 0000000..84f7d29 --- /dev/null +++ b/rst/download/indigo/indigo-1.22.0.rst @@ -0,0 +1,98 @@ + +.. toctree:: + :hidden: + :includehidden: + + ../../indigo/release-notes/index.rst + + +Indigo 1.22.0 +------------- + +Language Bindings +~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 0 + :stub-columns: 1 + + * - |p-icon| Python + - `indigo-python.zip `__ + * - |j-icon| Java + - `indigo-java.zip `__ + * - |c-icon| .NET + - `indigo-dotnet.zip `__ + * - |n-icon| Native Libraries in one archive + - `indigo-native-shared-libs.zip `__ + + +Platform/CPU Bindings +~~~~~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - |n-icon| Native Libraries x64 + - `indigo-libs-linux-x86_64.zip `__ + - `indigo-libs-windows-x86_64.zip `__ + - `indigo-libs-macos-x86_64.zip `__ + * - + - + - `indigo-libs-windows-mingw-x86_64.zip `__ + - + * - |n-icon| Native Libraries ARM64 + - `indigo-libs-linux-aarch64.zip `__ + - \- + - `indigo-libs-macos-aarch64.zip `__ + * - |n-icon| Native Libraries i386 + - \- + - `indigo-libs-windows-i386.zip `__ + - \- + * - |n-icon| Utilities x64 + - `indigo-utils-linux-x86_64.zip `__ + - `indigo-utils-windows-x86_64.zip `__ + - `indigo-utils-macos-x86_64.zip `__ + +Source code +~~~~~~~~~~~ + +`Source code zip `__ + +`Repository on GitHub `__ + + +NuGet Repository +~~~~~~~~~~~~~~~~ + +Indigo .NET packages available at `Nuget `__ + +Just add ``Indigo.Net`` as a dependency into the project. + +PyPi package +~~~~~~~~~~~~ + +Indigo Python SDK can be found at `PyPi `__ + +One can install the Indigo library using *pip* utility + + +.. code-block:: xml + + pip install epam.indigo + + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png +.. |image3| image:: ../../assets/globe.png +.. |p-icon| image:: ../../assets/indigo/python-icon.png +.. |j-icon| image:: ../../assets/indigo/java-icon.png +.. |c-icon| image:: ../../assets/indigo/csharp-icon.png +.. |n-icon| image:: ../../assets/indigo/native-icon.png +.. |w-icon| image:: ../../assets/indigo/wasm-icon.png diff --git a/rst/download/indigo/indigo-1.23.0.rst b/rst/download/indigo/indigo-1.23.0.rst new file mode 100644 index 0000000..f6e4e81 --- /dev/null +++ b/rst/download/indigo/indigo-1.23.0.rst @@ -0,0 +1,98 @@ + +.. toctree:: + :hidden: + :includehidden: + + ../../indigo/release-notes/index.rst + + +Indigo 1.23.0 +------------- + +Language Bindings +~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 0 + :stub-columns: 1 + + * - |p-icon| Python + - `indigo-python.zip `__ + * - |j-icon| Java + - `indigo-java.zip `__ + * - |c-icon| .NET + - `indigo-dotnet.zip `__ + * - |n-icon| Native Libraries in one archive + - `indigo-native-shared-libs.zip `__ + + +Platform/CPU Bindings +~~~~~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - |n-icon| Native Libraries x64 + - `indigo-libs-linux-x86_64.zip `__ + - `indigo-libs-windows-x86_64.zip `__ + - `indigo-libs-macos-x86_64.zip `__ + * - + - + - `indigo-libs-windows-mingw-x86_64.zip `__ + - + * - |n-icon| Native Libraries ARM64 + - `indigo-libs-linux-aarch64.zip `__ + - \- + - `indigo-libs-macos-aarch64.zip `__ + * - |n-icon| Native Libraries i386 + - \- + - `indigo-libs-windows-i386.zip `__ + - \- + * - |n-icon| Utilities x64 + - `indigo-utils-linux-x86_64.zip `__ + - `indigo-utils-windows-x86_64.zip `__ + - `indigo-utils-macos-x86_64.zip `__ + +Source code +~~~~~~~~~~~ + +`Source code zip `__ + +`Repository on GitHub `__ + + +NuGet Repository +~~~~~~~~~~~~~~~~ + +Indigo .NET packages available at `Nuget `__ + +Just add ``Indigo.Net`` as a dependency into the project. + +PyPi package +~~~~~~~~~~~~ + +Indigo Python SDK can be found at `PyPi `__ + +One can install the Indigo library using *pip* utility + + +.. code-block:: xml + + pip install epam.indigo + + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png +.. |image3| image:: ../../assets/globe.png +.. |p-icon| image:: ../../assets/indigo/python-icon.png +.. |j-icon| image:: ../../assets/indigo/java-icon.png +.. |c-icon| image:: ../../assets/indigo/csharp-icon.png +.. |n-icon| image:: ../../assets/indigo/native-icon.png +.. |w-icon| image:: ../../assets/indigo/wasm-icon.png diff --git a/rst/indigo/release-notes/index.rst b/rst/indigo/release-notes/index.rst index 9534796..0c181f8 100644 --- a/rst/indigo/release-notes/index.rst +++ b/rst/indigo/release-notes/index.rst @@ -7,6 +7,9 @@ Contents: .. toctree:: :maxdepth: 2 + indigo-1.23.0 + indigo-1.22.0 + indigo-1.21.0 indigo-1.20.0 indigo-1.19.0 indigo-1.18.0 diff --git a/rst/indigo/release-notes/indigo-1.21.0.md b/rst/indigo/release-notes/indigo-1.21.0.md new file mode 100644 index 0000000..bcf7979 --- /dev/null +++ b/rst/indigo/release-notes/indigo-1.21.0.md @@ -0,0 +1,31 @@ +# Indigo 1.21.0 +Released 2024-08-27 + +## Features +* [1903](https://github.com/epam/Indigo/issues/1903) Introduce IDT alias for monomers and RNA presets in Ket format +* [1901](https://github.com/epam/Indigo/issues/1901) Receive monomer library from Ketcher upon import/export IDT notation +* [1900](https://github.com/epam/Indigo/issues/1900) Export of modified RNA to IDT notation (modified IDT monomers) +* [1899](https://github.com/epam/Indigo/issues/1899) Import of modified IDT monomers + +## Bugsfixes +* [1974](https://github.com/epam/Indigo/issues/1974) Preview: User can save IDT with 5' phosphate but cannot open this file again. +* [1972](https://github.com/epam/Indigo/issues/1972) Can't save KET with nameless superatom +* [1996](https://github.com/epam/Indigo/issues/1996) Cannot open IDT with MOE sugar. +* [1960](https://github.com/epam/Indigo/issues/1960) Fix error message in the SequenceLoader for an invalid sequence +* [1928](https://github.com/epam/Indigo/issues/1928) Support monomer to molecule connections type +* [1878](https://github.com/epam/Indigo/issues/1878) The structure saved in CML format does not open +* [1843](https://github.com/epam/Indigo/issues/1843) FASTA export: 80 chars limit +* [2000](https://github.com/epam/Indigo/issues/2000) Exporting a CDX file to ChemDraw loses information about charge on atoms +* [1997](https://github.com/epam/Indigo/issues/1997) Export to IDT doesn't work at all for remote indigo +* [1993](https://github.com/epam/Indigo/issues/1993) Micro and macro structures connected through attachment points cannot be opened after save in CDXML format in micro mode +* [2004](https://github.com/epam/Indigo/issues/2004) Errors occur when trying to save a macro structure connected to a micro structure to MOL V3000 +* [1994](https://github.com/epam/Indigo/issues/1994) Micro and macro structures connected through attachment points cannot be opened after save in CDX and Base 64CDX format in micro mode +* [1992](https://github.com/epam/Indigo/issues/1992) Micro and macro structures connected through attachment points cannot be saved in Extended SMILES format in micro mode +* [1990](https://github.com/epam/Indigo/issues/1990) Micro and macro structures connected through attachment points cannot be saved in CML format in micro mode +* [1984](https://github.com/epam/Indigo/issues/1984) Error message is wrong if in case if position indicator in IDT code contradicts real position of the monomer in the chain +* [1982](https://github.com/epam/Indigo/issues/1982) Cannot open some expected IDT. + +## Improvements +* [1976](https://github.com/epam/Indigo/issues/1976) Too slow monomer library load + +**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.21.0...indigo-1.20.0 diff --git a/rst/indigo/release-notes/indigo-1.22.0.md b/rst/indigo/release-notes/indigo-1.22.0.md new file mode 100644 index 0000000..3ef1f44 --- /dev/null +++ b/rst/indigo/release-notes/indigo-1.22.0.md @@ -0,0 +1,19 @@ +# Indigo 1.22.0 +Released 2024-09-06 + +## Features +* [1912](https://github.com/epam/Indigo/issues/1912) Support unresolved IDT monomers (no structure, IDT only) +* [1919](https://github.com/epam/Indigo/issues/1919) Support of unsplit nucleotides +* [1188](https://github.com/epam/Indigo/issues/1188) HELM ver 1 scope: support multiple sequences and connection tables (import and export) +* [1188](https://github.com/epam/Indigo/issues/1188) HELM ver 2.04 support API for ketcher + +## Bugfixes +* [1993](https://github.com/epam/Indigo/issues/1993) Micro and macro structures connected through attachment points cannot be opened after save in CDXML format in micro mode +* [1986](https://github.com/epam/Indigo/issues/1986) System breaks IDT export line if it is longer than 80 chars by +* [2106](https://github.com/epam/Indigo/issues/2106) Export monomer with R2, R3, R4 APs resulted in monomer with R2, R3 if exported to mol v3000 +* [2110](https://github.com/epam/Indigo/issues/2110) The structure changes when saved in SVG/PNG formats + +## Improvements +* [877](https://github.com/epam/Indigo/issues/877) api: wasm: indigo-ketcher: prepare 2-files wasm+js package + +**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.22.0...indigo-1.21.0 diff --git a/rst/indigo/release-notes/indigo-1.23.0.md b/rst/indigo/release-notes/indigo-1.23.0.md new file mode 100644 index 0000000..2d7f8aa --- /dev/null +++ b/rst/indigo/release-notes/indigo-1.23.0.md @@ -0,0 +1,20 @@ +# Indigo 1.23.0 +Released 2024-09-06 + +## Features +* [2134](https://github.com/epam/Indigo/issues/2134) Store monomer library as API object +* [2144](https://github.com/epam/Indigo/issues/2144) Import/export images in KET +* [2071](https://github.com/epam/Indigo/issues/2071) add retrosynthetic arrow +* [2034](https://github.com/epam/Indigo/issues/2034) Introduce variant monomers in a model +* [2030](https://github.com/epam/Indigo/issues/2030) Load RDF Format as simple list of reaction + +## Bugfixes +* [1944](https://github.com/epam/Indigo/issues/1944) Fullerene and 3D molecules are not represented as 3D in the Miew 3D window +* [2213](https://github.com/epam/Indigo/issues/2213) Layout for 1-step reactions is broken + +## Improvements +* [2131](https://github.com/epam/Indigo/issues/2131) Create Indigo WASM bundle with removed rendering part +* [2139](https://github.com/epam/Indigo/issues/2139) use \ +* [2141](https://github.com/epam/Indigo/issues/2141) use \ instead of nano + +**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.23.0...indigo-1.22.0 diff --git a/rst/newsfeed.rst b/rst/newsfeed.rst index a1611c8..d80b62e 100644 --- a/rst/newsfeed.rst +++ b/rst/newsfeed.rst @@ -45,6 +45,56 @@ We are glad to announce that a new stable version of Ketcher 2.23.0 is released. Downloads +Indigo and Bingo 1.23.0 released +-------------------------------- + +*6 September 2024* + +We are happy to announce that a new version 1.23.0 of Indigo toolkit and Bingo is released. + +* |indigo_1_23_0_notes| + +* |indigo_1_23_0_downloads| + +* |bingo_1_23_0_downloads| + +.. |indigo_1_23_0_notes| raw:: html + + Release Notes + +.. |indigo_1_23_0_downloads| raw:: html + + Indigo Downloads + +.. |bingo_1_23_0_downloads| raw:: html + + Bingo Downloads + +Indigo and Bingo 1.22.0 released +-------------------------------- + +*6 September 2024* + +We are happy to announce that a new version 1.22.0 of Indigo toolkit and Bingo is released. + +* |indigo_1_22_0_notes| + +* |indigo_1_22_0_downloads| + +* |bingo_1_22_0_downloads| + +.. |indigo_1_22_0_notes| raw:: html + + Release Notes + +.. |indigo_1_22_0_downloads| raw:: html + + Indigo Downloads + +.. |bingo_1_22_0_downloads| raw:: html + + Bingo Downloads + Ketcher 2.22.0 released ----------------------- @@ -64,6 +114,31 @@ We are glad to announce that a new stable version of Ketcher 2.22.0 is released. Downloads +Indigo and Bingo 1.21.0 released +-------------------------------- + +*27 August 2024* + +We are happy to announce that a new version 1.21.0 of Indigo toolkit and Bingo is released. + +* |indigo_1_21_0_notes| + +* |indigo_1_21_0_downloads| + +* |bingo_1_21_0_downloads| + +.. |indigo_1_21_0_notes| raw:: html + + Release Notes + +.. |indigo_1_21_0_downloads| raw:: html + + Indigo Downloads + +.. |bingo_1_21_0_downloads| raw:: html + + Bingo Downloads + Indigo and Bingo 1.20.0 released --------------------------------