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config.yaml
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config.yaml
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# cluster parameters
partition: 'shortq'
mem: '32G'
threads: 2
##### GENERAL #####
project_name: "MR.PARETO"
#### Datasets and Workflows to include ###
workflows:
MyData:
unsupervised_analysis: "config/MyData/MyData_unsupervised_analysis_config.yaml"
RNAseq:
# ngs_fetch: "config/RNAseq/RNAseq_ngs_fetch_config.yaml"
rnaseq_pipeline: "config/RNAseq/RNAseq_rnaseq_pipeline_config.yaml"
genome_tracks: "config/RNAseq/RNAseq_genome_tracks_config.yaml"
spilterlize_integrate: "config/RNAseq/RNAseq_spilterlize_integrate_config.yaml"
unsupervised_analysis: "config/RNAseq/RNAseq_unsupervised_analysis_config.yaml"
dea_limma: "config/RNAseq/RNAseq_dea_limma_config.yaml"
enrichment_analysis: "config/RNAseq/RNAseq_enrichment_analysis_config.yaml"
ATACseq:
# ngs_fetch: "config/ATACseq/ATACseq_ngs_fetch_config.yaml"
atacseq_pipeline: "config/ATACseq/ATACseq_atacseq_pipeline_config.yaml"
genome_tracks: "config/ATACseq/ATACseq_genome_tracks_config.yaml"
spilterlize_integrate: "config/ATACseq/ATACseq_spilterlize_integrate_config.yaml"
unsupervised_analysis: "config/ATACseq/ATACseq_unsupervised_analysis_config.yaml"
dea_limma: "config/ATACseq/ATACseq_dea_limma_config.yaml"
enrichment_analysis: "config/ATACseq/ATACseq_enrichment_analysis_config.yaml"