references.bib

@article{Majumder:2013ie,
author = {Majumder, Mahbubul and Hofmann, Heike and Cook, Dianne},
title = {{Validation of Visual Statistical Inference, Applied to Linear Models}},
journal = {Journal of the American Statistical Association},
year = {2013},
volume = {108},
number = {503},
pages = {942--956},
month = sep
}

@article{2016arXiv160105788H,
   author = {{Hare}, E. and {Hofmann}, H. and {Carriquiry}, A.},
    title = "{Automatic Matching of Bullet Lands}",
  journal = {ArXiv e-prints},
archivePrefix = "arXiv",
   eprint = {1601.05788},
 primaryClass = "stat.AP",
 keywords = {Statistics - Applications},
     year = 2016,
    month = jan,
   adsurl = {http://adsabs.harvard.edu/abs/2016arXiv160105788H},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@article{hummel,
	Author = {J\"urgen Hummel},
	Journal = {Journal of Computational Statistics},
	Pages = {23--33},
	Title = {Linked Bar Charts: Analysing Categorical Data Graphically.},
	Volume = {11},
	Year = {1996}}

@Manual{bulletr,
    title = {bulletr: Algorithms for Matching Bullet Lands},
    author = {Heike Hofmann and Eric Hare},
    year = {2016},
    note = {R package version 0.1},
}

@article{lock2013significance,
  title={Significance of angle in the statistical comparison of forensic tool marks},
  author={Lock, Amy B and Morris, Max D},
  journal={Technometrics},
  volume={55},
  number={4},
  pages={548--561},
  year={2013},
  publisher={Taylor \& Francis}
}

@article{parnas1972criteria,
  title={On the criteria to be used in decomposing systems into modules},
  author={Parnas, David Lorge},
  journal={Communications of the ACM},
  volume={15},
  number={12},
  pages={1053--1058},
  year={1972},
  publisher={ACm}
}

@Manual{sensorfar,
    title = {SensoMATCH bullet comparison software},
    author = {{Sensorfar}},
    year = {2017}
}

@Manual{x3pr,
    title = {x3pr: Read/Write functionality for X3P surface metrology format},
    author = {{OpenFMC}},
    year = {2014},
    note = {R package version 1.0},
}

@online{pcast2016,
  title = {Report on Forensic Science in Criminal Courts: Ensuring Scientific Validity of Feature-Comparison Methods},
  author = {President's Council of Advisors on Science and Technology},
  year = {2016},
  url = {https://www.whitehouse.gov/sites/default/files/microsites/ostp/PCAST/pcast_forensic_science_report_final.pdf},
  urldate = {2016-09-24}
}

@online{radiant,
  title = {Radiant - Business analytics using R and Shiny},
  author = {Vincent Nijs},
  year = {2016},
  url = {https://radiant-rstats.github.io/docs},
  urldate = {2016-09-01}
}

@Manual{nullabor,
title = {nullabor: Tools for Graphical Inference},
author = {Hadley Wickham and Niladri Roy Chowdhury and Di Cook},
year = {2014},
note = {R package version 0.3.1},
url = {https://CRAN.R-project.org/package=nullabor},
}

@article{Loy:2016dqa,
author = {Loy, Adam and Follett, Lendie and Hofmann, Heike},
title = {{Variations of Q{\textendash}Q Plots: The Power of Our Eyes!}},
journal = {The American Statistician},
year = {2016},
volume = {70},
number = {2},
pages = {202--214},
month = jun
}

@article{Gelman:2004gg,
author = {Gelman, Andrew},
title = {{Exploratory Data Analysis for Complex Models}},
journal = {Journal of Computational and Graphical Statistics},
year = {2004},
volume = {13},
number = {4},
pages = {755--779},
month = dec
}

@article{Hofmann:tvcg:12,
author = {Hofmann, Heike and Follett, Lendie and Majumder, Mahbubul and Cook, Dianne},
title = {{Graphical Tests for Power Comparison of Competing Designs}},
journal = {IEEE Transactions on Visualization and Computer Graphics},
year = {2012},
volume = {18},
number = {12},
pages = {2441--2448},
month = dec
}

@book{agresti2012statistics,
  title={Statistics: the art and science of learning from data},
  author={Agresti, Alan and Franklin, Christine},
  year={2012},
  publisher={Pearson Higher Ed}
}

@article{szyperski1996independently,
  title={Independently extensible systems-software engineering potential and challenges},
  author={Szyperski, Clemens},
  journal={Australian Computer Science Communications},
  volume={18},
  pages={203--212},
  year={1996},
  publisher={UNIVERSITY OF CANTERBURY}
}

@article{clarkson1933definitions,
  title={On definitions of bounded variation for functions of two variables},
  author={Clarkson, James A and Adams, C Raymond},
  journal={Transactions of the American Mathematical Society},
  volume={35},
  number={4},
  pages={824--854},
  year={1933},
  publisher={JSTOR}
}

@article{vorburger:2011,
title = "Applications of cross-correlation functions ",
journal = "Wear ",
volume = "271",
number = "3--4",
pages = "529--533",
year = "2011",
note = "The 12th International Conference on Metrology and Properties of Engineering Surfaces ",
issn = "0043-1648",
doi = "http://dx.doi.org/10.1016/j.wear.2010.03.030",
url = "http://www.sciencedirect.com/science/article/pii/S0043164810001407",
author = "T.V. Vorburger and J.-F. Song and W. Chu and L. Ma and S.H. Bui and A. Zheng and T.B. Renegar",
keywords = "Cross-correlation",
keywords = "Surface",
keywords = "Roughness",
keywords = "Topography",
keywords = "Ballistics",
keywords = "Firearm "
}

@Manual{x3prplus,
    title = {x3prplus: Simple Models for x3p surface topology},
    author = {Heike Hofmann and Eric Hare},
    year = {2016},
    note = {{R} package version 0.0.1},
    url={{https://github.com/heike/x3prplus}}
  }

@Manual{intRopkg,
    title = {intRo: Download and Run the intRo Statistical Software},
    author = {Eric Hare and Andee Kaplan},
    year = {2016},
    note = {{R} package version 0.0.9001},
    url={{https://github.com/gammarama/intRo}}
  }
  
@manual{lineupspkg,
    title = {lineups: Shiny front-end/testing framework for lineupgen packages},
    author = {Eric Hare},
    year = {2016},
    url={{https://github.com/erichare/lineups}}
}

@article{xie:2009,
title = "Automated bullet-identification system based on surface topography techniques ",
journal = "Wear ",
volume = "266",
number = "5--6",
pages = "518--522",
year = "2009",
note = "Metrology and Properties of Engineering Surfaces ",
issn = "0043-1648",
doi = "http://dx.doi.org/10.1016/j.wear.2008.04.081",
url = "http://www.sciencedirect.com/science/article/pii/S0043164808002998",
author = "F. Xie and S. Xiao and L. Blunt and W. Zeng and X. Jiang",
keywords = "Surface topography",
keywords = "Bullet-identification",
keywords = "Surface segmentation",
keywords = "Visualization technique "
}

@Manual{caretpkg,
    title = {caret: Classification and Regression Training},
    author = {Max Kuhn. Contributions from Jed Wing and Steve Weston and Andre Williams and Chris Keefer and Allan Engelhardt and Tony Cooper and Zachary Mayer and Brenton Kenkel and the R Core Team and Michael Benesty and Reynald Lescarbeau and Andrew Ziem and Luca Scrucca and Yuan Tang and Can Candan and Tyler Hunt.},
    year = {2016},
    note = {R package version 6.0-73},
    url = {https://CRAN.R-project.org/package=caret},
  }

@article {riva:2014,
author = {Riva, Fabiano and Champod, Christophe},
title = {Automatic Comparison and Evaluation of Impressions Left by a Firearm on Fired Cartridge Cases},
journal = {Journal of Forensic Sciences},
volume = {59},
number = {3},
issn = {1556-4029},
url = {http://dx.doi.org/10.1111/1556-4029.12382},
doi = {10.1111/1556-4029.12382},
pages = {637--647},
keywords = {forensic science, firearms identification, likelihood ratio, cartridge cases, 3D topographies, evaluation},
year = {2014},
}


@book{petraco:2012,
 author = {Petraco, Nicholas and Chan, Helen},
 title = {Application of Machine Learning to Toolmarks: Statistically Based Methods for Impression Pattern Comparisons},
 year = {2012},
 isbn = {1249247675, 9781249247678},
 publisher = {Bibliographisches Institut AG},
 address = {Mannheim, Germany},
}

@techreport{bachrach:2006,
  author={Benjamin Bachrach},
  title={A Statistical Validation of the Individuality of
Guns Using 3D Images of Bullets },
  number={NCJ 213674},
  institution={National Criminal Justice Reference Service},
  address={Rockville, MD},
  year={2006},
  pages={67}
}


@Article{bachrach:2002,
   Author="Bachrach, B. ",
   Title="{{D}evelopment of a 3{D}-based automated firearms evidence comparison system}",
   Journal="J. Forensic Sci.",
   Year="2002",
   Volume="47",
   Number="6",
   Pages="1253--1264",
   Month="Nov"
}

@article{thompson:2013,
author = {Chu, Wei and Thompson, Robert M and Song, John and Vorburger, Theodore V},
title = {{Automatic identification of bullet signatures based on consecutive matching striae (CMS) criteria}},
journal = {Forensic Science International},
year = {2013},
volume = {231},
number = {1--3},
pages = {137--141}
}

@Article{chu:2011,
   Author="Chu, W.  and Song, J.  and Vorburger, T.  and Thompson, R.  and Silver, R.",
   Title="{{S}electing Valid Correlation Areas for Automated Bullet Identification System Based on Striation Detection}",
   Journal="Journal of Research of the National Institute of Standards and Technology",
   Year="2011",
   Volume="116",
   Number="3",
   Pages="649",
}

@Article{chu:2010,
   Author="Chu, W.  and Song, J.  and Vorburger, T.  and Yen, J.  and Ballou, S.  and Bachrach, B. ",
   Title="{{P}ilot study of automated bullet signature identification based on topography measurements and correlations}",
   Journal="J. Forensic Sci.",
   Year="2010",
   Volume="55",
   Number="2",
   Pages="341--347",
   Month="Mar"
}

@Article{chumbley:2010,
   Author="Chumbley, L. S.  and Morris, M. D.  and Kreiser, M. J.  and Fisher, C.  and Craft, J.  and Genalo, L. J.  and Davis, S.  and Faden, D.  and Kidd, J. ",
   Title="{{V}alidation of tool mark comparisons obtained using a quantitative, comparative, statistical algorithm}",
   Journal="J. Forensic Sci.",
   Year="2010",
   Volume="55",
   Number="4",
   Pages="953--961",
   Month="Jul"
}

@article{AFIS,
  title={Automated Firearms Identification System (AFIDS): Phase I},
  author = {R. J. Blackwell and  E. P. Framan},
  year=1980,
  journal={AFTE Journal},
  volume=12,
  number=4,
  pages={11--37},
  note = {re-published from 1974 JPL report}
}

@Article{rocr,
    entry = {article},
    title = {{ROCR: visualizing classifier performance in R}},
    author = {T. Sing and O. Sander and N. Beerenwinkel and T.
      Lengauer},
    year = {2005},
    journal = {Bioinformatics},
    volume = {21},
    number = {20},
    pages = {3940--3941},
    url = {http://rocr.bioinf.mpi-sb.mpg.de},
  }
  
@article{cleveland:1979,
 ISSN = {01621459},
 URL = {http://www.jstor.org/stable/2286407},
 abstract = {The visual information on a scatterplot can be greatly enhanced, with little additional cost, by computing and plotting smoothed points. Robust locally weighted regression is a method for smoothing a scatterplot, (x<sub>i</sub>, y<sub>i</sub>), i = 1, ⋯, n, in which the fitted value at x<sub>k</sub> is the value of a polynomial fit to the data using weighted least squares, where the weight for (x<sub>i</sub>, y<sub>i</sub>) is large if x<sub>i</sub> is close to x<sub>k</sub> and small if it is not. A robust fitting procedure is used that guards against deviant points distorting the smoothed points. Visual, computational, and statistical issues of robust locally weighted regression are discussed. Several examples, including data on lead intoxication, are used to illustrate the methodology.},
 author = {William S. Cleveland},
 journal = {Journal of the American Statistical Association},
 number = {368},
 pages = {829--836},
 publisher = {Taylor & Francis, Ltd.},
 title = {Robust Locally Weighted Regression and Smoothing Scatterplots},
 volume = {74},
 year = {1979}
}



@incollection{cleveland:1992,
 author = "William S. Cleveland and E. Grosse and W. M. Shyu",
 title = "Local regression models",
 editor = {John M. Chambers and Trevor J. Hastie},
 booktitle={{Statistical} {Models} in {S}},
 publisher = "Chapman and Hall",
 pages = {309 -- 376},
 chapter = 8,
 year = 1992
}

@article{hummel,
	Author = {J\"urgen Hummel},
	Journal = {Journal of Computational Statistics},
	Pages = {23--33},
	Title = {Linked Bar Charts: Analysing Categorical Data Graphically.},
	Volume = {11},
	Year = {1996}}
	
@Article{ma:2004,
   Author="Ma, L.  and Song, J.  and Whitenton, E.  and Zheng, A.  and Vorburger, T.  and Zhou, J. ",
   Title="{{N}{I}{S}{T} bullet signature measurement system for {R}{M} ({R}eference {M}aterial) 8240 standard bullets}",
   Journal="Journal of Forensic Sciences",
   Year="2004",
   Volume="49",
   Number="4",
   Pages="649--659",
   Month="Jul"
}

@article{roberge:2006,
  author = {Roberge, D. and Beauchamp, A.},
  title={The use of BulletTrax-3D in a study of consecutively manufactured barrels},
  journal={AFTE Journal},
  year=2006,
  volume=38,
  number=2,
  pages={166--172}
}

@Article{dekinder:2004,
   Author="{De Kinder}, J.  and Tulleners, F.  and Thiebaut, H. ",
   Title="{{R}eference ballistic imaging database performance}",
   Journal="Forensic Science International",
   Year="2004",
   Volume="140",
   Number="2-3",
   Pages="207--215",
   Month="Mar"
}

@Article{deceuster:2015,
   Author={{De Ceuster}, J.  and Dujardin, S. },
   Title="{{T}he reference ballistic imaging database revisited}",
   Journal="Forensic Science International",
   Year="2015",
   Volume="248",
   Pages="82--87",
   Month="Mar"
}

@article{jain:2015:tphil,
  author={A. K. Jain and A. Ross}, 
  title="Bridging the Gap: From Biometrics to Forensics", 
  journal={Philosophical Transactions of The Royal Society B}, 
  volume= 370, 
  number= 1674, 
  year=2015
}

@incollection{jain:2015,
  author      = "Anil K. Jain and K. Cao",
  title       = "Fingerprint Image Analysis: Role of Orientation Patch and Ridge Structure Dictionaries",
  editor      = "I. L. Dryden and J. T. Kent",
  booktitle   = "Geometry Driven Statistics",
  publisher   = "John Wiley and Sons",
  address     = "New York",
  year        = 2015
}


@MISC{piotte:2009,
    author = {Martin Piotte and Martin Chabbert},
    title = {{The Pragmatic Theory Solution to the Netflix Grand Prize, in: Netflix prize documentation}},
    year = {2009},
    howpublished={\url{http://www.netflixprize.com/assets/GrandPrize2009_BPC_PragmaticTheory.pdf}}
}

@MISC{toescher:2009,
    author = {Andreas T\"oscher and Michael Jahrer and Robert M. Bell},
    title = {{The BigChaos Solution to the Netflix Grand Prize}},
    year = {2009},
    howpublished={\url{http://www.netflixprize.com/assets/GrandPrize2009_BPC_BigChaos.pdf}}
}

@MISC{koren:2009,
    author = {Yehuda Koren},
    title = {{The BellKor Solution to the Netflix Grand Prize}},
    year = {2009},
    howpublished={\url{http://www.netflixprize.com/assets/GrandPrize2009_BPC_BellKor.pdf}}
}

@article{miller:1998,
  author={J. Miller},
  title={Criteria for identification of toolmarks},
  journal={AFTE Journal},
  year=1998,
  volume=30,
  number={1},
  pages={15--61}
}

@article{breiman:2001,
  author = {Leo Breiman}, 
  year = 2001, 
  title={Random Forests}, 
  journal={Machine Learning},
  volume={45},
  number={1}, 
  pages={5--32}
}

@Article{randomForest,
    title = {Classification and Regression by randomForest},
    author = {Andy Liaw and Matthew Wiener},
    journal = {R News},
    year = {2002},
    volume = {2},
    number = {3},
    pages = {18-22},
    url = {http://CRAN.R-project.org/doc/Rnews/},
  }
  
@book{tukey:1977,
   author =    {John Wilder Tukey},
   title =     {Exploratory Data Analysis.},
   year =      1977,
   publisher = {Addison-Wesley},
}

@Book{knitr,
    title = {Dynamic Documents with {R} and knitr},
    author = {Yihui Xie},
    publisher = {Chapman and Hall/CRC},
    address = {Boca Raton, Florida},
    year = {2015},
    edition = {2nd},
    note = {ISBN 978-1498716963},
    url = {http://yihui.name/knitr/},
  }
  
@Manual{R,
    title = {R: A Language and Environment for Statistical Computing},
    author = {{R Core Team}},
    organization = {R Foundation for Statistical Computing},
    address = {Vienna, Austria},
    year = {2016},
    url = {https://www.R-project.org/},
  }
  
@Manual{SPlus,
  title =        "{S-PLUS} Programmer's Manual",
  organization = "StatSci, a Division of MathSoft, Inc.",
  address =      "Seattle, WA, USA",
  edition =      "Version 3.1",
  pages =        "various",
  month =        oct,
  year =         "1992",
}
  
@Book{ggplot2,
    author = {Hadley Wickham},
    title = {ggplot2: Elegant Graphics for Data Analysis},
    publisher = {Springer-Verlag New York},
    year = {2009},
    isbn = {978-0-387-98140-6},
    url = {http://had.co.nz/ggplot2/book},
  }

@book{breiman:1984,
  author = {Leo Breiman and Jerry H. Friedman and R. A. Olshen and C. J. Stone},
  publisher ={Wadsworth, Inc.},
  title={Classification and Regression Trees},
  year={1984}
}

@Manual{rpart.plot,
    title = {rpart.plot: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'},
    author = {Stephen Milborrow},
    year = {2015},
    note = {{R} package version 1.5.3},
    url = {http://CRAN.R-project.org/package=rpart.plot},
  }

@Manual{rpart,
    title = {rpart: Recursive Partitioning and Regression Trees},
    author = {Terry Therneau and Beth Atkinson and Brian Ripley},
    year = {2015},
    note = {{R} package version 4.1-10},
    url = {http://CRAN.R-project.org/package=rpart},
  }
  
@article{moran:2003,
  title={{The Application of the Scientific Method to Firearm and Toolmark Examination}},
  author={B. Moran and J. Murdock},
  journal={AFTE Journal},
  volume=35, 
  number=2,
  year=2003,
  pages={234--240}
}

@article{majumder2013,
  title={{Investigations into Visual Statistical Inference}},
  author={Md Mahbubul Amin Majumder},
  year=2013,
  journal = {Graduate Theses and Dissertations}
}

@article{nichols:2003,
  title={{Consecutive Matching Striations (CMS): Its Definition, Study and Application in the Discipline of Firearms and Tool Mark Identification}},
  author={Ronald G. Nichols},
  year=2003,
  volume=35,
  number=3,
  pages ={298--306},
  journal = {AFTE Journal}
}

@article{giannelli:2011,
  author={Paul C. Giannelli},
  title={Ballistics Evidence Under Fire},
  journal={Criminal Justice},
  volume=25,
  number=4,
  year=2011,
  pages={50--51}
}

@article{nichols:1997,
  author={Ronald G. Nichols},
  title={Firearm and Toolmark Identification Criteria: A Review of the Literature},
  journal={Journal of Forensic Sciences}, 
  volume= 42, 
  number=3, 
  year=1997, 
  pages={466--474}
}

@article{nichols:2003b,
  author={Ronald G. Nichols},
  title={Firearm and Toolmark Identification Criteria: A Review of the Literature: part II},
  journal={Journal of Forensic Sciences}, 
  volume= 48, 
  number=2, 
  year=2003, 
  pages={318--327}
}

@article{afte:1992,
  author={{AFTE Criteria for Identification Committee}},
  year=1992, 
  title={Theory of identification, range striae comparison reports and modified glossary definitions – AFTE criteria for identification committee report},
  journal = {AFTE Journal},
  volume=24,
  number=2,
  pages={336--340}
}

@book{nap:2008,
  title={Ballistic Imaging},
  year=2008,
  editor={Daniel L. Coork and Eugene S. Meieran and Carol V. Petrie},
  author={{Committee to Assess the Feasibility, Accuracy and Technical Capability of a National Ballistics Database}},
  doi={{10.17226/12162}},
  pages=344,
  publisher = "The National Academies Press",
  address   = "Washington, DC"
}

@Manual{plotly,
    title = {plotly: Create interactive web-based graphs via plotly's API},
    author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
    note = {{R} package version 2.0.2},
    url = {http://CRAN.R-project.org/package=plotly},
  }
  
@Manual{shiny,
    title = {shiny: Web Application Framework for R},
    author = {Winston Chang and Joe Cheng and JJ Allaire and Yihui Xie and Jonathan McPherson},
    year = {2015},
    note = {{R} package version 0.12.2},
    url = {http://CRAN.R-project.org/package=shiny},
  }

@article{biasotti:1959,
  author = {Alfred A. Biasotti},
  title = {A Statistical Study of the Individual Characteristics of Fired Bullets},
  journal = {Journal of Forensic Sciences},
  volume = 4,
  number = 1,
  year = 1959,
  pages = {34--50}
}

@article{cary,
  author = {Cary Wong},
  title = {Cary Persistence},
  note = {A brand new Ruger P89 9 mm luger is fired 2000 times with no cleaning. This was done to evaluate how the toolmarks being imparted on the bullet and cartridge case changes over time.}
}

@article{hamby:2009,
author ={James E. Hamby and David J. Brundage and James W. Thorpe}, 
title={{The Identification of Bullets Fired from 10 Consecutively Rifled 9mm Ruger Pistol Barrels: A Research Project Involving 507 Participants from 20 Countries}},
journal={AFTE Journal}, 
volume={41}, 
number={2}, 
year={2009},
pages={99--110}
}

@BOOK{NAS:2009,
  author    = {{National Research Council}},
  title     = "Strengthening Forensic Science in the United States: A Path Forward",
  isbn      = "978-0-309-13130-8",
  doi       = "10.17226/12589",
  abstract  =  {{Scores of talented and dedicated people serve the forensic science community, performing vitally important work. However, they are often constrained by lack of adequate resources, sound policies, and national support. It is clear that change and advancements, both systematic and scientific, are needed in a number of forensic science disciplines to ensure the reliability of work, establish enforceable standards, and promote best practices with consistent application. Strengthening Forensic Science in the United States: A Path Forward provides a detailed plan for addressing these needs and suggests the creation of a new government entity, the National Institute of Forensic Science, to establish and enforce standards within the forensic science community.\n\nThe benefits of improving and regulating the forensic science disciplines are clear: assisting law enforcement officials, enhancing homeland security, and reducing the risk of wrongful conviction and exoneration. Strengthening Forensic Science in the United States gives a full account of what is needed to advance the forensic science disciplines, including upgrading of systems and organizational structures, better training, widespread adoption of uniform and enforceable best practices, and mandatory certification and accreditation programs.  \n\nWhile this book provides an essential call-to-action for congress and policy makers, it also serves as a vital tool for law enforcement agencies, criminal prosecutors and attorneys, and forensic science educators. }},
  url       = "http://www.nap.edu/catalog/12589/strengthening-forensic-science-in-the-united-states-a-path-forward",
  year      = 2009,
  publisher = "The National Academies Press",
  address   = "Washington, DC"
}

@book{agresti2012statistics,
  title={Statistics: the art and science of learning from data},
  author={Agresti, Alan and Franklin, Christine},
  year={2012},
  publisher={Pearson Higher Ed}
}

@book{xie2015,
  title={Dynamic Documents with R and knitr},
  author={Xie, Yihui},
  volume={29},
  pages={5--10},
  year={2015},
  publisher={CRC Press}
}

@article{baggerly2011reproducible,
  title={Reproducible Research},
  author={Baggerly, Keith A and Berry, Donald A},
  journal={AMSTAT news: the membership magazine of the American Statistical Association},
  number={403},
  pages={16--17},
  year={2011},
  publisher={American Statistical Association}
}

@INPROCEEDINGS{5359977, 
    author={P. H. Tan and C. Y. Ting and S. W. Ling}, 
    booktitle={Computer Technology and Development, 2009. ICCTD '09. International Conference on}, 
    title={Learning Difficulties in Programming Courses: Undergraduates' Perspective and Perception}, 
    year={2009}, 
    volume={1}, 
    pages={42-46}, 
    keywords={computer aided instruction;computer games;computer science education;educational courses;information technology;programming;computer programming;game-based learning;information technology;learning difficulties;programming courses;self-experimentation;Education;Information technology;Programming;Programming;education game;game-based learning;interest;learning;motivation;programming difficulties}, 
    doi={10.1109/ICCTD.2009.188}, 
month={Nov},}

@Manual{RStudio,
    title = {RStudio: Integrated Development Environment for R},
    author = {{RStudio Team}},
    organization = {RStudio, Inc.},
    address = {Boston, MA},
    year = {2015},
    url = {http://www.rstudio.com/},
}

@Manual{ggvis,
  title = {ggvis: Interactive grammar of graphics},
  author = {{RStudio} and {Inc.}},
  year = {2014},
  note = {R package version 0.4},
  url = {http://CRAN.R-project.org/package=ggvis},
}

@Manual{shiny,
  title = {shiny: Web Application Framework for R},
  author = {{RStudio} and {Inc.}},
  year = {2014},
  note = {R package version 0.10.2.1},
  url = {http://CRAN.R-project.org/package=shiny},
}

@Manual{rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Jonathan McPherson and Yihui Xie and Hadley Wickham and Joe Cheng and Jeff Allen},
  year = {2014},
  note = {R package version 0.3.3},
  url = {http://CRAN.R-project.org/package=rmarkdown},
}

 @Manual{mosaic,
    title = {mosaic: Project MOSAIC (mosaic-web.org) statistics and mathematics
teaching utilities},
    author = {Randall Pruim and Daniel Kaplan and Nicholas Horton},
    year = {2014},
    note = {R package version 0.9.1-3},
    url = {http://CRAN.R-project.org/package=mosaic},
  }

@Manual{swirl,
    title = {swirl: Learn R, in R.},
    author = {Nick Carchedi and Bill Bauer and Gina Grdina and Sean Kross},
    year = {2014},
    note = {R package version 2.2.16},
    url = {http://CRAN.R-project.org/package=swirl},
  }

@inproceedings{bainomugisha2012survey,
  title={A survey on reactive programming},
  author={Bainomugisha, Engineer and Carreton, Andoni Lombide and Van Cutsem, Tom and Mostinckx, Stijn and De Meuter, Wolfgang},
  booktitle={ACM Computing Surveys},
  year={2012},
  organization={Citeseer}
}

@article{scrimshaw2001computers,
  title={Computers and the teacher’s role},
  author={Scrimshaw, Peter},
  journal={Knowledge, Power and Learning},
  year={2001},
  publisher={London, Paul Chapman Publishing Ltd}
}

@online{datacamp,
  author = {DataCamp},
  title = {Online R tutorials and Data Science Courses - DataCamp},
  year = 2014,
  url = {https://www.datacamp.com/},
  urldate = {2014-12-11}
}

@online{interpolate,
  author = {Hadley Wickham},
  title = {Graphics & computing student paper winners @ JSM 2015},
  year = 2015,
  url = {https://github.com/hadley/15-student-papers},
  urldate = {2016-01-20}
}

@online{inzight,
  title = {iNZight Lite},
  author = {Chris Wild},
  year = {2015},
  url = {http://lite.docker.stat.auckland.ac.nz},
  urldate = {2016-06-06}
}

@article{fox2005,
  title={The R Commander: A Basic-Statistics Graphical User Interface to R},
  author={Fox, John},
  journal={Journal of Statistical Software},
  year={2005},
  volume={14},
  issue={9}
}

@article{fellows2012,
  title={Deducer: A Data Analysis GUI for R},
  author={Fellows, Ian},
  journal={Journal of Statistical Software},
  year={2012},
  volume={49},
  issue={8}
}

@online{shinymodules,
  title = {Shiny - Modularizing Shiny app code},
  author = {Joe Cheng},
  year = {2015},
  url = {http://shiny.rstudio.com/articles/modules.html},
  urldate = {2016-06-06}
}

@article{stevens2010holoviews,
  title={HoloViews: Building Complex Visualizations Easily for Reproducible Science},
  author={Stevens, Jean-Luc R and Rudiger, Philipp and Bednar, James A},
  year={2010}
}

@article{buja2009statistical,
  title={Statistical inference for exploratory data analysis and model diagnostics},
  author={Buja, Andreas and Cook, Dianne and Hofmann, Heike and Lawrence, Michael and Lee, Eun-Kyung and Swayne, Deborah F and Wickham, Hadley},
  journal={Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences},
  volume={367},
  number={1906},
  pages={4361--4383},
  year={2009},
  publisher={The Royal Society}
}